Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012702_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:8:178936506:178947896:1 gene:Zm00001d012702 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoenolpyruvate carboxylase 3
Sequence

ATGCTGGATGAGATTGGGAATGTGCTGACCAGCTTGGATCCTGGAGACTCCATTGTCATA
ACCAAGTCATTCTCACACATGCTGATCCTGGCAAACTTGGCTGAGGAGGTACAAATTGCA
TACCGCAGGAGAATAAAACTGAAGAAGGGTGACTTTGTTGATGAGAACTCAGCAACAACT
GAATCAGACATTGAGGAGACACTAAAGAGGCTTATGCATCAGCTTAAGAAATCCCCTCTG
GAGGTATTTGATGCTCTCAAGAATCAAACTGTTGACCTCGTCCTGACTGCACATCCAACT
CAGTCAGTCCGGAGATCATTGCTTCAAAAGCATGGCAGGATAAGAAACTGTTTAACTCAA
CTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGA
GAGATTCAAGCTGCCTTTAGAACTGATGAAATCAGGCGGGCGCCTCCTACTCCGCAGGAT
GAAATGCGTGCTGGAATGAGTTATTTTCATGAGACTATATGGAAGGGTGTACCCAAGTTC
TTACGTAGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAAT
GCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGGGAATCCAAGAGTC
ACGCCAGAGGTTACAAGGGATGTATGCTTGTTGGCTAGAATGATGGCTGCTAATTTGTAT
AATGCCCAGATAGAAGACCTGATGTTTGAGTTATCTATGTGGCGATGCAGTGACGAGTTA
CGTGTAAAGGTCGATCAGTTATACCATTCCTCCAAGAAAGATACGACAAAACACTATATA
GAGTTCTGGAAGCAAGTCCCTCCCAGTGAACCTTACCGTGTGATTCTGAGTGATGTCAGA
GATAAACTCTATAACACACGTGAACGAGCACGTCACTTATTAGCTAGTGGGTTTTCTGAA
ATTCCAGAGGAAGCAACCTTCACCGATGTTGAACAGTTCTTGGAGCCTCTTGAGCTCTGT
TACAGATCTCTGTGTGCCTGTGGTGATCGCTCTGTTGCGGATGGAAGCCTTCTTGACTTC
TTAAGGCAAGTGTCAACATTTGGACTATCCCTTGTTAGACTTGATATCAGGCAAGAATCT
GACCGGCATACTGATGTTATGGATGCTATAACTGAATACCTCGGTATTGGATCATACCGT
AAATGGCCAGAGGAGAAACGCCAAGAATGGCTACTATCGGAACTTAATGGAAAGAGGCCG
TTATTTGGTCCGGACCTTCCCAAGTCAGATGAGATTGCTGATGTACTAGATACTTTCCAC
GTATTAGCTGAACTTCCATCAGACAGCTTTGGTGCATATGTAATATCTATGGCGACTGCT
CCCTCAGATGTCCTTGCTGTGGAGCTCTTGCAGCGTGAATGCCATGTGAAAAAACCACTG
AGAGTCGTTCCTTTGTTCGAAAAACTGGCAGATCTTGAGTCAGCACCAGCAGCGTTAGCT
CGGCTGTTCTCCGTTGAATGGTACAGAAACAGGATCAGCGGCAAGCAGGAAGTGATGATC
GGGTATTCAGATTCTGGCAAGGATGCCGGTCGTTTCTCTGCTGCTTGGCAACTGTACAAG
GCTCAAGAGGAGCTCATTAATGTCGCTAAGCTGTATGGGGTTAAGCTAACCATGTTCCAC
GGACGAGGCGGAACTGTGGGAAGAGGTGGGGGCCCTACCCATCTTGCTATACTGTCACAA
CCTCCAGAAACCATCCATGGATCACTTAGGGTAACCGTTCAAGGCGAAGTCATTGAGCAG
TCTTTCGGAGAGGAGCATTTGTGCTTTAGGACACTGCAACGTTTCACGGCTGCGACCCTT
GAACATGGTATGCACCCTCCAATTTCGCCGAAACCAGAATGGCGTGCTTTGATGGATGAG
ATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTT
GAATACTTCCGCCTTGCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGG
CCATCGAAAAGAAAGCCGAGTGCGGGCATCGAGTCGCTGCGCGCAATCCCTTGGATCTTC
GCTTGGACGCAGACTCGGTTCCACCTGCCGGTGTGGCTGGGTTTCGGCGCGGCGTTCAAG
CATGTCTTGGACAAGGACATACGGAATCTCCAGACCCTTCAGGAGATGTACAACCAGTGG
CCCTTTTTCAGGGTGACGATAGACCTGGTCGAGATGGTGTTCGCCAAGGGTGATCCTGGC
ATCGCGGCGCTGTACGACAAGCTTCTGGTCTCAGAGGATCTGTGGGCATTAGGGGCGCGT
CTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGGTCGCTGGGCACAAGGAC
CTTCTGGAGGGCGACCCGTACCTGAAGCAGAGGCTGCGCATCCGTGACTCGTACACCACG
GCGCTGAACGTTTGCCAGGCCTACACGCTGAAGCGCATCAGGGACCCTGGCTTCCAGGTG
AAGCCGCGGCCCCACCTGTCGAAGGACATCATGGACATGGGCAAGCCGGCGTCGGAGCTC
GTGAAGCTGAACACCACCAGCGAGTACGCCCCGGGGCTGGAGGACACCCTCATCCTGACC
ATGAAGGGCATCGCTGCCGGGATGCAGAACACCGGCTGA

Peptide Sequence

PEP ID

Zm00001d012702_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:8:178936506:178947896:1 gene:Zm00001d012702 transcript:Zm00001d012702_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoenolpyruvate carboxylase 3
Sequence

MLDEIGNVLTSLDPGDSIVITKSFSHMLILANLAEEVQIAYRRRIKLKKGDFVDENSATT
ESDIEETLKRLMHQLKKSPLEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQ
LYAKDITPDEKQELDEALQREIQAAFRTDEIRRAPPTPQDEMRAGMSYFHETIWKGVPKF
LRRVDTALKNIGINERLPYNAPIIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLY
NAQIEDLMFELSMWRCSDELRVKVDQLYHSSKKDTTKHYIEFWKQVPPSEPYRVILSDVR
DKLYNTRERARHLLASGFSEIPEEATFTDVEQFLEPLELCYRSLCACGDRSVADGSLLDF
LRQVSTFGLSLVRLDIRQESDRHTDVMDAITEYLGIGSYRKWPEEKRQEWLLSELNGKRP
LFGPDLPKSDEIADVLDTFHVLAELPSDSFGAYVISMATAPSDVLAVELLQRECHVKKPL
RVVPLFEKLADLESAPAALARLFSVEWYRNRISGKQEVMIGYSDSGKDAGRFSAAWQLYK
AQEELINVAKLYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQ
SFGEEHLCFRTLQRFTAATLEHGMHPPISPKPEWRALMDEMAIVATKEYRSIVFEEPRFV
EYFRLATPEMEYGRMNIGSRPSKRKPSAGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFK
HVLDKDIRNLQTLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEDLWALGAR
LRANYEETKQLLLQVAGHKDLLEGDPYLKQRLRIRDSYTTALNVCQAYTLKRIRDPGFQV
KPRPHLSKDIMDMGKPASELVKLNTTSEYAPGLEDTLILTMKGIAAGMQNTG

Transcript Sequence

Transcript ID

Zm00001d012702_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:178936506:178947896:1 gene:Zm00001d012702 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoenolpyruvate carboxylase 3
Sequence

AATCTTTGAGTAACATTCTGATATGCAGCTTGATTTCTGTGCTCGTTTGTTACACAGCAA
TTCCAGTTTGTTCACCAACTCACTCTACATTTGTTGGACATTTATATTTTTGCAAATTCT
GTAAAGTTTCCCTTTTTTGTGAATAGGTGCAAGAATGTTACGAGTTAGCTGCTGAGTATG
AAAATAAGCTTGACCCCAAAATGCTGGATGAGATTGGGAATGTGCTGACCAGCTTGGATC
CTGGAGACTCCATTGTCATAACCAAGTCATTCTCACACATGCTGATCCTGGCAAACTTGG
CTGAGGAGGTACAAATTGCATACCGCAGGAGAATAAAACTGAAGAAGGGTGACTTTGTTG
ATGAGAACTCAGCAACAACTGAATCAGACATTGAGGAGACACTAAAGAGGCTTATGCATC
AGCTTAAGAAATCCCCTCTGGAGGTATTTGATGCTCTCAAGAATCAAACTGTTGACCTCG
TCCTGACTGCACATCCAACTCAGTCAGTCCGGAGATCATTGCTTCAAAAGCATGGCAGGA
TAAGAAACTGTTTAACTCAACTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAAC
TTGATGAAGCACTTCAAAGAGAGATTCAAGCTGCCTTTAGAACTGATGAAATCAGGCGGG
CGCCTCCTACTCCGCAGGATGAAATGCGTGCTGGAATGAGTTATTTTCATGAGACTATAT
GGAAGGGTGTACCCAAGTTCTTACGTAGGGTTGACACTGCTCTTAAGAACATTGGCATAA
ATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACC
GTGATGGGAATCCAAGAGTCACGCCAGAGGTTACAAGGGATGTATGCTTGTTGGCTAGAA
TGATGGCTGCTAATTTGTATAATGCCCAGATAGAAGACCTGATGTTTGAGTTATCTATGT
GGCGATGCAGTGACGAGTTACGTGTAAAGGTCGATCAGTTATACCATTCCTCCAAGAAAG
ATACGACAAAACACTATATAGAGTTCTGGAAGCAAGTCCCTCCCAGTGAACCTTACCGTG
TGATTCTGAGTGATGTCAGAGATAAACTCTATAACACACGTGAACGAGCACGTCACTTAT
TAGCTAGTGGGTTTTCTGAAATTCCAGAGGAAGCAACCTTCACCGATGTTGAACAGTTCT
TGGAGCCTCTTGAGCTCTGTTACAGATCTCTGTGTGCCTGTGGTGATCGCTCTGTTGCGG
ATGGAAGCCTTCTTGACTTCTTAAGGCAAGTGTCAACATTTGGACTATCCCTTGTTAGAC
TTGATATCAGGCAAGAATCTGACCGGCATACTGATGTTATGGATGCTATAACTGAATACC
TCGGTATTGGATCATACCGTAAATGGCCAGAGGAGAAACGCCAAGAATGGCTACTATCGG
AACTTAATGGAAAGAGGCCGTTATTTGGTCCGGACCTTCCCAAGTCAGATGAGATTGCTG
ATGTACTAGATACTTTCCACGTATTAGCTGAACTTCCATCAGACAGCTTTGGTGCATATG
TAATATCTATGGCGACTGCTCCCTCAGATGTCCTTGCTGTGGAGCTCTTGCAGCGTGAAT
GCCATGTGAAAAAACCACTGAGAGTCGTTCCTTTGTTCGAAAAACTGGCAGATCTTGAGT
CAGCACCAGCAGCGTTAGCTCGGCTGTTCTCCGTTGAATGGTACAGAAACAGGATCAGCG
GCAAGCAGGAAGTGATGATCGGGTATTCAGATTCTGGCAAGGATGCCGGTCGTTTCTCTG
CTGCTTGGCAACTGTACAAGGCTCAAGAGGAGCTCATTAATGTCGCTAAGCTGTATGGGG
TTAAGCTAACCATGTTCCACGGACGAGGCGGAACTGTGGGAAGAGGTGGGGGCCCTACCC
ATCTTGCTATACTGTCACAACCTCCAGAAACCATCCATGGATCACTTAGGGTAACCGTTC
AAGGCGAAGTCATTGAGCAGTCTTTCGGAGAGGAGCATTTGTGCTTTAGGACACTGCAAC
GTTTCACGGCTGCGACCCTTGAACATGGTATGCACCCTCCAATTTCGCCGAAACCAGAAT
GGCGTGCTTTGATGGATGAGATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTAT
TTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTGCAACGCCAGAGATGGAGTATGGCA
GGATGAACATCGGAAGCAGGCCATCGAAAAGAAAGCCGAGTGCGGGCATCGAGTCGCTGC
GCGCAATCCCTTGGATCTTCGCTTGGACGCAGACTCGGTTCCACCTGCCGGTGTGGCTGG
GTTTCGGCGCGGCGTTCAAGCATGTCTTGGACAAGGACATACGGAATCTCCAGACCCTTC
AGGAGATGTACAACCAGTGGCCCTTTTTCAGGGTGACGATAGACCTGGTCGAGATGGTGT
TCGCCAAGGGTGATCCTGGCATCGCGGCGCTGTACGACAAGCTTCTGGTCTCAGAGGATC
TGTGGGCATTAGGGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGC
AGGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGGCTGCGCA
TCCGTGACTCGTACACCACGGCGCTGAACGTTTGCCAGGCCTACACGCTGAAGCGCATCA
GGGACCCTGGCTTCCAGGTGAAGCCGCGGCCCCACCTGTCGAAGGACATCATGGACATGG
GCAAGCCGGCGTCGGAGCTCGTGAAGCTGAACACCACCAGCGAGTACGCCCCGGGGCTGG
AGGACACCCTCATCCTGACCATGAAGGGCATCGCTGCCGGGATGCAGAACACCGGCTGAA
GCCAGTGTGCCTGTCTTCTTTCTGTAGGGGATCATATCATATGGCGTGATGAACCAGTGA
ACACCTGGATATGTGGGGATTAGTTACACCCTGTTGCACTCGAATTTATGC