Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012597_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:8:177035542:177039950:1 gene:Zm00001d012597 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGACGGCGCCCAAGCTCAAGCTCCTAGCTCTTCCTACTCTGCTGGTCCTCATCCTCCTC
CTCCTCCTCTCCGCCGCCCGGCGGCGCGTCCTTCTGGAGACGCTCCTCCTCCGCGCCCCG
GTCCTCCCGGGCGACCTCCTCCCGCTCCTGCCCTGGCCCGTGGCGCAGCCGCTGCTCCGC
CGCCTCGCGCTGCGGGGCCCCGCCGACCTGCTCCCGGCTTTCGTCGGGGCCGCGCGCGCG
CCGGGGTCCGACGACGCCTACCCGGTCGCCGAGTGGAAGGGCGCCTGCTTCTACGAGAAC
AGGGCGTGGGTGGAGTTCCGCAACGGGACCGGCGGGGGGCTCGGAGGCGGCGTAGTCCAT
GTGGAGACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTGCAACACCA
TACAGAGTTACATGGGATTACTACTTTCTGGGGCGAGAGCACACTCTTGATATCAAAGAA
TGGGAAAGCGAGGCTGAGTATGAGTATGTGAAACGTAATGGTGTGTCCATCTTCCTCATG
CCATCTGGAACAATTGGCACACTTCGAGCACTCTGGGATGTCTTCCCTCTGTTCACAAAT
ACTGCATGGGGTGAGAACGCGAATCTTGCTTTTCTCGAGAAGCATATGGGTGCCACCTTT
GAGGAACGCCCAAAACCTTGGGTCTCAGAGTTAAATCCTGATGATATCCAGTCGGGAGAT
TTCTTGGTTTTATCGAAGATTCGCGGGCGTTGGGGTGGTTTTGAAACACTGGAGAAGTGG
GTTACTGGCGCTTATGCTGGCCATACTGCGGTTTGCCTGAGGGACTCCGATGGAAAGCTT
TGGGTTGGGGAATCTGGTAATGAAAATGAACAGGGAGAAGATGTTATTGCTATCCTGCCC
TGGGAGGAATGGTGGGAGTTTGAAGTGACAAAGGATGACTCAAATCCTCAGATTGCACTG
CTTCCTTTGCATCCAGATCTGCGGGCAAAATTTAATGAGACAGCAGCTTGGATTTATGCA
AAAAGCATGGAGGGGAAACCTTATGGGTATCACAATATGATATTTAGCTGGATTGATACC
ATCAGTGATAATTATCCACCACCATTAGATGCTCATGTGGTTGCTTCTGTTATGACTGTA
TGGAGCAAGCTTCAACCAGAGTATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGG
CTTGGAACTAAGGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATA
ACATTTGACAAGTTACTATCTGTTCCTGAGAACGATAGCTGGGTCTATGAAGATGGTCAG
TCAGCATCTTGTGTGGCTTTCGTCCTTATGATGTACAAGGAGGCTGGACTCTTTGACCCT
ATTACCAGCTCTATTGAAGTTACTGAATTCACAATAAAAGATGCTTATATCCTCAACTTT
TTTGAGGACAACTCGACCCGACTTCCGGAGTGGTGCAACAAGGATGACGATGTGAAGCTT
CCCTTTTGCCAGATCAAGGGCAAGTACCGGATGGAGCTGCCTGGATACAACACCATGAAA
CCCTATGCCCACATGAACGAGAGATGTCCATCCCTGCCTCCAGATTACAACAGGACTAAG
GGCTGCTAG

Peptide Sequence

PEP ID

Zm00001d012597_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:8:177035542:177039950:1 gene:Zm00001d012597 transcript:Zm00001d012597_T004 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MTAPKLKLLALPTLLVLILLLLLSAARRRVLLETLLLRAPVLPGDLLPLLPWPVAQPLLR
RLALRGPADLLPAFVGAARAPGSDDAYPVAEWKGACFYENRAWVEFRNGTGGGLGGGVVH
VETSKAHSWTCIDLYVFATPYRVTWDYYFLGREHTLDIKEWESEAEYEYVKRNGVSIFLM
PSGTIGTLRALWDVFPLFTNTAWGENANLAFLEKHMGATFEERPKPWVSELNPDDIQSGD
FLVLSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSDGKLWVGESGNENEQGEDVIAILP
WEEWWEFEVTKDDSNPQIALLPLHPDLRAKFNETAAWIYAKSMEGKPYGYHNMIFSWIDT
ISDNYPPPLDAHVVASVMTVWSKLQPEYAANMWKEALNKRLGTKGLDLSEIIVESEKRGI
TFDKLLSVPENDSWVYEDGQSASCVAFVLMMYKEAGLFDPITSSIEVTEFTIKDAYILNF
FEDNSTRLPEWCNKDDDVKLPFCQIKGKYRMELPGYNTMKPYAHMNERCPSLPPDYNRTK
GC

Transcript Sequence

Transcript ID

Zm00001d012597_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:177035542:177039950:1 gene:Zm00001d012597 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ACCGCTCCCCCGAGATTAGGGGGGGAGCGCAAGTGCCTGAAGTAAGCCTAATCCTAACCG
CCGCCGTCATGACGGCGCCCAAGCTCAAGCTCCTAGCTCTTCCTACTCTGCTGGTCCTCA
TCCTCCTCCTCCTCCTCTCCGCCGCCCGGCGGCGCGTCCTTCTGGAGACGCTCCTCCTCC
GCGCCCCGGTCCTCCCGGGCGACCTCCTCCCGCTCCTGCCCTGGCCCGTGGCGCAGCCGC
TGCTCCGCCGCCTCGCGCTGCGGGGCCCCGCCGACCTGCTCCCGGCTTTCGTCGGGGCCG
CGCGCGCGCCGGGGTCCGACGACGCCTACCCGGTCGCCGAGTGGAAGGGCGCCTGCTTCT
ACGAGAACAGGGCGTGGGTGGAGTTCCGCAACGGGACCGGCGGGGGGCTCGGAGGCGGCG
TAGTCCATGTGGAGACATCCAAAGCACACAGCTGGACTTGCATAGATCTGTATGTATTTG
CAACACCATACAGAGTTACATGGGATTACTACTTTCTGGGGCGAGAGCACACTCTTGATA
TCAAAGAATGGGAAAGCGAGGCTGAGTATGAGTATGTGAAACGTAATGGTGTGTCCATCT
TCCTCATGCCATCTGGAACAATTGGCACACTTCGAGCACTCTGGGATGTCTTCCCTCTGT
TCACAAATACTGCATGGGGTGAGAACGCGAATCTTGCTTTTCTCGAGAAGCATATGGGTG
CCACCTTTGAGGAACGCCCAAAACCTTGGGTCTCAGAGTTAAATCCTGATGATATCCAGT
CGGGAGATTTCTTGGTTTTATCGAAGATTCGCGGGCGTTGGGGTGGTTTTGAAACACTGG
AGAAGTGGGTTACTGGCGCTTATGCTGGCCATACTGCGGTTTGCCTGAGGGACTCCGATG
GAAAGCTTTGGGTTGGGGAATCTGGTAATGAAAATGAACAGGGAGAAGATGTTATTGCTA
TCCTGCCCTGGGAGGAATGGTGGGAGTTTGAAGTGACAAAGGATGACTCAAATCCTCAGA
TTGCACTGCTTCCTTTGCATCCAGATCTGCGGGCAAAATTTAATGAGACAGCAGCTTGGA
TTTATGCAAAAAGCATGGAGGGGAAACCTTATGGGTATCACAATATGATATTTAGCTGGA
TTGATACCATCAGTGATAATTATCCACCACCATTAGATGCTCATGTGGTTGCTTCTGTTA
TGACTGTATGGAGCAAGCTTCAACCAGAGTATGCTGCTAATATGTGGAAAGAAGCCCTTA
ACAAACGGCTTGGAACTAAGGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAAC
GTGGGATAACATTTGACAAGTTACTATCTGTTCCTGAGAACGATAGCTGGGTCTATGAAG
ATGGTCAGTCAGCATCTTGTGTGGCTTTCGTCCTTATGATGTACAAGGAGGCTGGACTCT
TTGACCCTATTACCAGCTCTATTGAAGTTACTGAATTCACAATAAAAGATGCTTATATCC
TCAACTTTTTTGAGGACAACTCGACCCGACTTCCGGAGTGGTGCAACAAGGATGACGATG
TGAAGCTTCCCTTTTGCCAGATCAAGGGCAAGTACCGGATGGAGCTGCCTGGATACAACA
CCATGAAACCCTATGCCCACATGAACGAGAGATGTCCATCCCTGCCTCCAGATTACAACA
GGACTAAGGGCTGCTAGTGCTAACCAGATATGCGTGTGCATTTTATTCACGCTCCCTTGT
AGCCATTGCTTCAGCTGTAAATATTATACATTTATACTAGTATAATAGTACTATGGGGGT
ATGTACTGCTTGCCCTTGAGAAGCGTGTATTGATTGTAGGCAACTTATGTGAGACTTCCT
CGAATAAGGAAGAACATGAATCACACAAATGTACAGTAACCATGCTTGATCTTTTTATCA
GTGTTTACTTATGTAACAGTAAAAAATGTATAATGTATGTGCGCCTTTGGACTGAGCTG