Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d012529_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:8:176119341:176122899:-1 gene:Zm00001d012529 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger protein VAR3 chloroplastic
Sequence	ATGGTTGAGTTAGTGAGTTTTAGTGCTCTTTCCCAGTCTTCCACTTCTGTGGAATTAACT CCCAACCAAATTTGCTCGAGTCAGCATGAACAATTTTCCAGGCCTCCAGGGCAAAATATC GAAATGAAGCGAGGTGATTGGATTTGCACAAGATGTAGCTTCATGAACTTCGCAAGAAAC GTTAGGTGCCTTGAGTGCAATGAGCAGAGGCCAAAGAAGATGTTGACTGGTGGAGAGTGG GAATGCCCTCAGTGTGATTTCTATAACTATGGGAGGAATATGTCATGCTTAAAATGTGAT TGCAAGAGGCCAGCAACAATCCCACCGCATCCTACATCTGTTGGTGCTGATTTAGGTGGT GTGGTACAGCAGCTTCTCAAGGTAACAACAAGTGTTGGTAAATCTGAAATTGAGAGAAAA CTTGCTGAAAATGATGAAAAGGCAGAGAGATGGTTGAGCAAAGTATCTCAACTTCATGAT TCAGCAGACTTAAGTAGTCTAGCAGAAGATGAGGACTTTCCTGAGATTATGCCTATGCGC AAGGGGGTGAATAAGTTTGTGGTTAGCACACGCAAAACACCACTGGAGAGAAGGCTTGCA AATGCACAGTACAGCAGTAACAATATCCTCACATTGTCCGACCCAAAGATAAGTCAAACT TTGGACAGGATACTTGGGAGTTCAGCTCCTACTGCAGCCCCAAACAATCAATCTGTTACT AGTGATGCAACTATGGAAGCTCCGAAGAAATCAATAGATCACCTCAGTGGCATTGACCCT GTTCCCTTTGAGCCCCTGTCTGCAGATCTCTTTGCTAAACCAGAGAGTAATGATCGACAG AGAAATGAGAATGAAAAAAACAATGTAGAAGATGGCAGTTCTATGGCAAATAATACAGTG CCTTTACCTGAGAGGCGAAGTATGGAATCATTAGATACTGCTGAGAAATGGTCCGAGAAA GTAGCAGAACTTGACAATGTAAAGGATTCTCCAAGTGCAATTTCCGATGAAAATTTTCCT GAGATTATGCCAATAAGGAAAGGTGAAAATCGATTTGTTGTTAGTAAGAAAAAAGATCGC TCATTGACATCACAGCAGTACAAAAGGCGCAGTATTCTCGAGCAGGCAGACAGTTCTGAT TTTGTCCCATTTGTTCCTTTTCCTCCTGGCTACTTTGGCAAGAAAGATACGCCAATAGAG AGTACTACACACACAGGAATTATGTCAGGAGACGGTCAGCCAAAAGGTAACCTGAATAAT GAGAACTGGAACAGGAATTACTATCAATATCAATCACAATCTCAAGAATTTAGGCCTAGT GGTAATGCATATACTGGCTCTGGGAACACAGGCAACTCCGAGGGGAACATTAATGGGAGT AGGGGCGAATCTACTTACCATGAAGCTAACTTTGAAAAGCGATCTTATTATAACTCAGGT TATAGCAACAACGGTTATTGGAGCAGCGATAACAATAACAGCAACAATGCCTGGAGTGAC AACTCTAATTATAACAACAATAATGCTTGGAGTGGTAACAATTCCTATAACGGGTGTATT AGGAACGACAATACCAGCTGCAACAGCAATCGTGATTATAACTACAATGATACATGGAGT GCCAGCAGCAACAGTGCATGGAGCAGCAGCAACAACAATAACCAGAGTGGTCCATTTGCT GACAATAGCAATGCCACTAGAAGCAGTAGTTCCGTGAATGCTAATCACTCGGTTCACAGC TCAGGTTATGGAGGAAACTCGAACAGAGGTTATACTGGAAAGAGCTTGGAAGGATCTGCT GTGAAGGATCCTGATCCTCTAGACATGTCTGAGGAAGCTAAGGCTGAGAGATGGTTTAGG AGGGCAGCTCAGATAAAGGACATCTCTGAGCTGGCGAATATTCCCGACGAGGACTTCCCT GAGATAATGCCGATGAGGAAGGGGGTGAATAGATTCGTCGTGAGTAAGAGGAAGACGCCA TTGGAGAGGAGATTAACATCCCCGCAATACAGAAGGAACCTGCCAATCGTTAGTTCTGAA ACGGACAAAGATGCCAACTGA

Peptide Sequence

PEP ID	Zm00001d012529_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:8:176119341:176122899:-1 gene:Zm00001d012529 transcript:Zm00001d012529_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger protein VAR3 chloroplastic
Sequence	MVELVSFSALSQSSTSVELTPNQICSSQHEQFSRPPGQNIEMKRGDWICTRCSFMNFARN VRCLECNEQRPKKMLTGGEWECPQCDFYNYGRNMSCLKCDCKRPATIPPHPTSVGADLGG VVQQLLKVTTSVGKSEIERKLAENDEKAERWLSKVSQLHDSADLSSLAEDEDFPEIMPMR KGVNKFVVSTRKTPLERRLANAQYSSNNILTLSDPKISQTLDRILGSSAPTAAPNNQSVT SDATMEAPKKSIDHLSGIDPVPFEPLSADLFAKPESNDRQRNENEKNNVEDGSSMANNTV PLPERRSMESLDTAEKWSEKVAELDNVKDSPSAISDENFPEIMPIRKGENRFVVSKKKDR SLTSQQYKRRSILEQADSSDFVPFVPFPPGYFGKKDTPIESTTHTGIMSGDGQPKGNLNN ENWNRNYYQYQSQSQEFRPSGNAYTGSGNTGNSEGNINGSRGESTYHEANFEKRSYYNSG YSNNGYWSSDNNNSNNAWSDNSNYNNNNAWSGNNSYNGCIRNDNTSCNSNRDYNYNDTWS ASSNSAWSSSNNNNQSGPFADNSNATRSSSSVNANHSVHSSGYGGNSNRGYTGKSLEGSA VKDPDPLDMSEEAKAERWFRRAAQIKDISELANIPDEDFPEIMPMRKGVNRFVVSKRKTP LERRLTSPQYRRNLPIVSSETDKDAN

Transcript Sequence

Transcript ID	Zm00001d012529_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:176119341:176122899:-1 gene:Zm00001d012529 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger protein VAR3 chloroplastic
Sequence	CTCTCCTTACCCTCCCCGCACCGTACCCTCTACATCTCGTCCGCTTCCGCCTCCCTTCCG CACGGCTCCAGCTCGGCCTGCCCGCCGCCACCGCTCCGAGCGCCTTTCCCCGAGTGGTCC CGCCTCGTCGACCGACTTGCCGCCACCGGATACGGCTCCGGCCTGCCCTTTTCCGCTGAC GATCTCGCCCTCGTGTCCGGATGCGTCCTGTCGGACGGGGAGCAGGCCGCTGTCTCCACC TGCCTCGCCTTCGCGCGCGACCGGCCTGACCTCCTGAGTTCGCTTCAAAGGAAGGACGTG GAGGTCCTGGTGGGCAATGTGGCGCCGTCTCTGTTCAAGGACGGGGAGGCATCAGGACAG CGGCTTCGGCGCTACCTTGCTGGGGAAGAAACCGACGTATGTCATGTCACTGTTTCAGAG AGAGCTGGAACTGTTGATATTGTTCGATATCTGCTAAGTTACATATACGGTTCTTCTGAC ATCTGCTCAGAAGACAAGGAACTCACTGATTTGGCCGTGAGAAATATCATGGTTGAGTTA GTGAGTTTTAGTGCTCTTTCCCAGTCTTCCACTTCTGTGGAATTAACTCCCAACCAAATT TGCTCGAGTCAGCATGAACAATTTTCCAGGCCTCCAGGGCAAAATATCGAAATGAAGCGA GGTGATTGGATTTGCACAAGATGTAGCTTCATGAACTTCGCAAGAAACGTTAGGTGCCTT GAGTGCAATGAGCAGAGGCCAAAGAAGATGTTGACTGGTGGAGAGTGGGAATGCCCTCAG TGTGATTTCTATAACTATGGGAGGAATATGTCATGCTTAAAATGTGATTGCAAGAGGCCA GCAACAATCCCACCGCATCCTACATCTGTTGGTGCTGATTTAGGTGGTGTGGTACAGCAG CTTCTCAAGGTAACAACAAGTGTTGGTAAATCTGAAATTGAGAGAAAACTTGCTGAAAAT GATGAAAAGGCAGAGAGATGGTTGAGCAAAGTATCTCAACTTCATGATTCAGCAGACTTA AGTAGTCTAGCAGAAGATGAGGACTTTCCTGAGATTATGCCTATGCGCAAGGGGGTGAAT AAGTTTGTGGTTAGCACACGCAAAACACCACTGGAGAGAAGGCTTGCAAATGCACAGTAC AGCAGTAACAATATCCTCACATTGTCCGACCCAAAGATAAGTCAAACTTTGGACAGGATA CTTGGGAGTTCAGCTCCTACTGCAGCCCCAAACAATCAATCTGTTACTAGTGATGCAACT ATGGAAGCTCCGAAGAAATCAATAGATCACCTCAGTGGCATTGACCCTGTTCCCTTTGAG CCCCTGTCTGCAGATCTCTTTGCTAAACCAGAGAGTAATGATCGACAGAGAAATGAGAAT GAAAAAAACAATGTAGAAGATGGCAGTTCTATGGCAAATAATACAGTGCCTTTACCTGAG AGGCGAAGTATGGAATCATTAGATACTGCTGAGAAATGGTCCGAGAAAGTAGCAGAACTT GACAATGTAAAGGATTCTCCAAGTGCAATTTCCGATGAAAATTTTCCTGAGATTATGCCA ATAAGGAAAGGTGAAAATCGATTTGTTGTTAGTAAGAAAAAAGATCGCTCATTGACATCA CAGCAGTACAAAAGGCGCAGTATTCTCGAGCAGGCAGACAGTTCTGATTTTGTCCCATTT GTTCCTTTTCCTCCTGGCTACTTTGGCAAGAAAGATACGCCAATAGAGAGTACTACACAC ACAGGAATTATGTCAGGAGACGGTCAGCCAAAAGGTAACCTGAATAATGAGAACTGGAAC AGGAATTACTATCAATATCAATCACAATCTCAAGAATTTAGGCCTAGTGGTAATGCATAT ACTGGCTCTGGGAACACAGGCAACTCCGAGGGGAACATTAATGGGAGTAGGGGCGAATCT ACTTACCATGAAGCTAACTTTGAAAAGCGATCTTATTATAACTCAGGTTATAGCAACAAC GGTTATTGGAGCAGCGATAACAATAACAGCAACAATGCCTGGAGTGACAACTCTAATTAT AACAACAATAATGCTTGGAGTGGTAACAATTCCTATAACGGGTGTATTAGGAACGACAAT ACCAGCTGCAACAGCAATCGTGATTATAACTACAATGATACATGGAGTGCCAGCAGCAAC AGTGCATGGAGCAGCAGCAACAACAATAACCAGAGTGGTCCATTTGCTGACAATAGCAAT GCCACTAGAAGCAGTAGTTCCGTGAATGCTAATCACTCGGTTCACAGCTCAGGTTATGGA GGAAACTCGAACAGAGGTTATACTGGAAAGAGCTTGGAAGGATCTGCTGTGAAGGATCCT GATCCTCTAGACATGTCTGAGGAAGCTAAGGCTGAGAGATGGTTTAGGAGGGCAGCTCAG ATAAAGGACATCTCTGAGCTGGCGAATATTCCCGACGAGGACTTCCCTGAGATAATGCCG ATGAGGAAGGGGGTGAATAGATTCGTCGTGAGTAAGAGGAAGACGCCATTGGAGAGGAGA TTAACATCCCCGCAATACAGAAGGAACCTGCCAATCGTTAGTTCTGAAACGGACAAAGAT GCCAACTGAAAACAGAGGTATGATTGCCTGCATACCACAATCTTAACTGTACTGCGACGC ACCATTTTTACACCAAGGTATTACTCTTTGTGACGATAAGGGAGCAATCAGAAACAAGAA TCATCAAGAATAATGCTCCAGGAAGGTTTTTGTACGGTAAAAATTATGTCCGCAATGACC TAGGGTTTGCTGGATTGTGTTCGCTACATGTACACTATACACGTTTACGTTGT