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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012473_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:8:175094482:175095108:1 gene:Zm00001d012473 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence

ATGGATCCCTCCGGGCCTGGCCCGTCGTCAGTCATAGGGGCAGCTGGAGGCGATGAGGCA
GCGGCCGTGGCGCTGCAGCGGCCGGCGCAGCTGAGTAGATACGAGTCGCAGAAGCGGAGA
GACTGGAACACGTTCCTGCAGTACCTGCGGAACCACCGGCCGCCGCTGACGCTGGCGCGG
TGCAGCGGCGCGCACGTGATCGAGTTCCTCAGGTACCTGGACCAGTTCGGCAAGACCAAG
GTGCACGCAGCCGGGTGCGCCTACTACGGCCAGCGCGCGCCGCCGGGGCCCTGCCCGTGC
CCGCTGCGCCAGGCGTGGGGGTCGCTCGACGCGCTCATCGGCCGCCTGCGCGCGGCGTAC
GAGGAGAGCGGCAGGACGCCCGAGTCCAACCCCTTGGCGGCGCGCGCCGTGCGGATCTAC
CTCCGCGAAGTGCGCGACTCCCAGGCCAAGGCGCGCGGTATCCCCTACGAAAAGAAGACG
AAGCGCAAGCGCGCGCAGCAGCAGGCCACGGAGCCTTCGACGAGCTCGTCTGATGCTGCC
GCCGGGAGTGGCAGGGCTAGAGCAGCAGCTGCTGCGGCGTCCGCTGCTCAGGCTGGAGGG
AGTAGCGCTGCACCGAGCTCCACTTGA

Peptide Sequence

PEP ID

Zm00001d012473_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:8:175094482:175095108:1 gene:Zm00001d012473 transcript:Zm00001d012473_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence

MDPSGPGPSSVIGAAGGDEAAAVALQRPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLAR
CSGAHVIEFLRYLDQFGKTKVHAAGCAYYGQRAPPGPCPCPLRQAWGSLDALIGRLRAAY
EESGRTPESNPLAARAVRIYLREVRDSQAKARGIPYEKKTKRKRAQQQATEPSTSSSDAA
AGSGRARAAAAAASAAQAGGSSAAPSST

Transcript Sequence

Transcript ID

Zm00001d012473_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:175094482:175095108:1 gene:Zm00001d012473 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence

ATGGATCCCTCCGGGCCTGGCCCGTCGTCAGTCATAGGGGCAGCTGGAGGCGATGAGGCA
GCGGCCGTGGCGCTGCAGCGGCCGGCGCAGCTGAGTAGATACGAGTCGCAGAAGCGGAGA
GACTGGAACACGTTCCTGCAGTACCTGCGGAACCACCGGCCGCCGCTGACGCTGGCGCGG
TGCAGCGGCGCGCACGTGATCGAGTTCCTCAGGTACCTGGACCAGTTCGGCAAGACCAAG
GTGCACGCAGCCGGGTGCGCCTACTACGGCCAGCGCGCGCCGCCGGGGCCCTGCCCGTGC
CCGCTGCGCCAGGCGTGGGGGTCGCTCGACGCGCTCATCGGCCGCCTGCGCGCGGCGTAC
GAGGAGAGCGGCAGGACGCCCGAGTCCAACCCCTTGGCGGCGCGCGCCGTGCGGATCTAC
CTCCGCGAAGTGCGCGACTCCCAGGCCAAGGCGCGCGGTATCCCCTACGAAAAGAAGACG
AAGCGCAAGCGCGCGCAGCAGCAGGCCACGGAGCCTTCGACGAGCTCGTCTGATGCTGCC
GCCGGGAGTGGCAGGGCTAGAGCAGCAGCTGCTGCGGCGTCCGCTGCTCAGGCTGGAGGG
AGTAGCGCTGCACCGAGCTCCACTTGA