Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012289_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:8:171916105:171917804:1 gene:Zm00001d012289 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transposon protein Mutator sub-class

Sequence

ATGGATCCCGCGAACAGCAGCGCGGGCGCCGAGCTCGACGACGCGTCCGAGTGGCGCACC
CGGGCGCTGGGCGGCACGGAGTACAGCTGGCTCCGCGCCGTGCCGGGCGGCACCGGCACC
ACGCTGCTCGCGCTCCGCCTATCCCGCGGCGACGCGGCCGAGGCGGCGCTGCGCTCCCTG
CGGGACGCGCACCCCGTCCTCCGCGCCCGCCTCCGGACCTCTTCTCCCTCCGGCCCGACG
CTGGCGTTCCCCGATCCGGCACCGCCGTTCCCGCTGGCGCCGCTCCCGGCCCCGGGCTCC
GCGCCCGACTTCCACGCGCTCCTCGAGCACGAGCTCAACCGCAACCCGTGGGCCGACGAC
CCCGCGTCCTCCGACGACGCCCCGGTCCTCTTCGCGACGCTCTACGAGCTCCCAGCCGCC
ACGGGCGACGCGGCGCTGTTCGTCCGGATCCACACGGTCGCGTGCGACCGCTCGGCGGCG
AGTGCGCTGGCCAGGGAGCTCGTCGCGCTGCTGGCCGGCGCCGGCGGCGAGGAGCCCGAC
CCGGAGGATGCGGCGGCGGAAGCGGGGCTGGAGGCGAGGATCCCCCAGAGGGACACCTGG
AAGCCGTTCTGGGCGCGCGGGTTGGATATGGTGGGCTACTCCATCAACGGCCTGCGGACG
TCCACGCTGCCGTTCGTGGAGACCGGCACGGAGAGGTCCACGCAGATGCTGCGGCTCGGG
CTCGGCCTCGACGAGACGACGAGGCTGCTCGACGCGTGCAAGGAGAACGGGGTGAGGCTG
TGCTCCGCCGTGGCCGCCGCGACGATGCTCGCCGCGCGGCAGTCGAAGCCGCTGGAGAGC
GGCCAGCAGGAGACGTACTCTGTCGTGACCCTTATCAATTGCCGCAAGTTTCTTGAGCCA
GTCTTGGAGGACCGCAACGTTGGGTTCTTCTACTCCGCCATCACCAACACGCACACGATC
CACGGCGGGGAAGGGCTGTGGGAGCTGGCCAAGAGATGCCACGACTCGTACACCAGCGCC
AAGAGCAACAAGAAACACCTCACCGACATCAACGACCTCAACTTCCTCATGTGCCGGGCC
ATCGAGAACCCCCAGCTGACGACCGCCGGCGCGCTACGGACGGCGCTCGTCTCCGTGTTC
GAGGACCCCGTGGTCGCCGACGTGGCCGAGGTGCAGAGCAAGGCCGGCGTGGAGGACTGC
GTCTGCTGCGCCACCGTGCACGGCATCGGCCCGTCGATCGGCGTGTTCGACTCGATCAAG
GACGGCAAGCTGGACTGGGCGTGCGTCTACCCTTCTCCTCTGCACTCCAGGAAGCAGGTC
CAGGAGATCTTCGACAAGGTGACGCAGATTTTGCACCATGCAGCTGCGGCTGAGGAAAAT
TTTGGAGACTGCACCTAA

Peptide Sequence

PEP ID

Zm00001d012289_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:8:171916105:171917804:1 gene:Zm00001d012289 transcript:Zm00001d012289_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transposon protein Mutator sub-class

Sequence

MDPANSSAGAELDDASEWRTRALGGTEYSWLRAVPGGTGTTLLALRLSRGDAAEAALRSL
RDAHPVLRARLRTSSPSGPTLAFPDPAPPFPLAPLPAPGSAPDFHALLEHELNRNPWADD
PASSDDAPVLFATLYELPAATGDAALFVRIHTVACDRSAASALARELVALLAGAGGEEPD
PEDAAAEAGLEARIPQRDTWKPFWARGLDMVGYSINGLRTSTLPFVETGTERSTQMLRLG
LGLDETTRLLDACKENGVRLCSAVAAATMLAARQSKPLESGQQETYSVVTLINCRKFLEP
VLEDRNVGFFYSAITNTHTIHGGEGLWELAKRCHDSYTSAKSNKKHLTDINDLNFLMCRA
IENPQLTTAGALRTALVSVFEDPVVADVAEVQSKAGVEDCVCCATVHGIGPSIGVFDSIK
DGKLDWACVYPSPLHSRKQVQEIFDKVTQILHHAAAAEENFGDCT

Transcript Sequence

Transcript ID

Zm00001d012289_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:171916105:171917804:1 gene:Zm00001d012289 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transposon protein Mutator sub-class

Sequence

ACAAACGCCATCATGCACCGACTCTGATCCAATTTCACACGCATACTAGCGCCGCCGGTA
GCAGCACCGGCAGCCGCGTTCCTCTCCGCCATGGATCCCGCGAACAGCAGCGCGGGCGCC
GAGCTCGACGACGCGTCCGAGTGGCGCACCCGGGCGCTGGGCGGCACGGAGTACAGCTGG
CTCCGCGCCGTGCCGGGCGGCACCGGCACCACGCTGCTCGCGCTCCGCCTATCCCGCGGC
GACGCGGCCGAGGCGGCGCTGCGCTCCCTGCGGGACGCGCACCCCGTCCTCCGCGCCCGC
CTCCGGACCTCTTCTCCCTCCGGCCCGACGCTGGCGTTCCCCGATCCGGCACCGCCGTTC
CCGCTGGCGCCGCTCCCGGCCCCGGGCTCCGCGCCCGACTTCCACGCGCTCCTCGAGCAC
GAGCTCAACCGCAACCCGTGGGCCGACGACCCCGCGTCCTCCGACGACGCCCCGGTCCTC
TTCGCGACGCTCTACGAGCTCCCAGCCGCCACGGGCGACGCGGCGCTGTTCGTCCGGATC
CACACGGTCGCGTGCGACCGCTCGGCGGCGAGTGCGCTGGCCAGGGAGCTCGTCGCGCTG
CTGGCCGGCGCCGGCGGCGAGGAGCCCGACCCGGAGGATGCGGCGGCGGAAGCGGGGCTG
GAGGCGAGGATCCCCCAGAGGGACACCTGGAAGCCGTTCTGGGCGCGCGGGTTGGATATG
GTGGGCTACTCCATCAACGGCCTGCGGACGTCCACGCTGCCGTTCGTGGAGACCGGCACG
GAGAGGTCCACGCAGATGCTGCGGCTCGGGCTCGGCCTCGACGAGACGACGAGGCTGCTC
GACGCGTGCAAGGAGAACGGGGTGAGGCTGTGCTCCGCCGTGGCCGCCGCGACGATGCTC
GCCGCGCGGCAGTCGAAGCCGCTGGAGAGCGGCCAGCAGGAGACGTACTCTGTCGTGACC
CTTATCAATTGCCGCAAGTTTCTTGAGCCAGTCTTGGAGGACCGCAACGTTGGGTTCTTC
TACTCCGCCATCACCAACACGCACACGATCCACGGCGGGGAAGGGCTGTGGGAGCTGGCC
AAGAGATGCCACGACTCGTACACCAGCGCCAAGAGCAACAAGAAACACCTCACCGACATC
AACGACCTCAACTTCCTCATGTGCCGGGCCATCGAGAACCCCCAGCTGACGACCGCCGGC
GCGCTACGGACGGCGCTCGTCTCCGTGTTCGAGGACCCCGTGGTCGCCGACGTGGCCGAG
GTGCAGAGCAAGGCCGGCGTGGAGGACTGCGTCTGCTGCGCCACCGTGCACGGCATCGGC
CCGTCGATCGGCGTGTTCGACTCGATCAAGGACGGCAAGCTGGACTGGGCGTGCGTCTAC
CCTTCTCCTCTGCACTCCAGGAAGCAGGTCCAGGAGATCTTCGACAAGGTGACGCAGATT
TTGCACCATGCAGCTGCGGCTGAGGAAAATTTTGGAGACTGCACCTAACGATGTCGTCGG
GAGCTTTA