Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012233_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:8:170593617:170597148:-1 gene:Zm00001d012233 gene_biotype:protein_coding transcript_biotype:protein_coding description:PHD finger protein

Sequence

ATGGTGGTCAACGGCCGGCCGCTGAAGAGGGCGAGGGCGCGGGTCGAGGCCAGGGACTTC
GCGAGGTTCCCGGCGGCCGGAGACTGCGGGGCGGCCGGGACGTTCAGGGAGGCGGTGAGA
GGGTTCCTCGCAAAGCATGCGAGGCTGCTCCCGTTGCCGTCCATCTTCTCTCCGGCGGCC
GCGGCCGCCCCGCCGCACCTGCTGATCTGGAGGGTGTCCCTAAGGGTCGGGGAGGCCGGG
GAGGAAGAGAGCGGCGGCGGGGTAGAGCTCAACGTCGTTGAGGAGGATGTGCTCCGATCC
CGATCTGTGTATTGTGACCAGTGCAGAGTCGTGGGCTGGAGTGGACACCCGGTCTGCGTG
AAGCGGTACCATTTCATCATCGAGAACGACAGTAGCCACCTTTCTGGCCGCCGGCGCACC
TGCTGCCTCCGCTGCGGAACACCCATGGCCGCTGGAGAATCAAGGTGTGCTCTGTGCAAT
TTCGATATGGATGGGGAGGAGATTGAAGAGTGTGCATACCTGCATCTGGATGACCCCACC
CACTTGCTGCACGCTGTGGTGCATGCAAATGGTTATGGGCATCTTCTCAGGGTAAATGGG
CGTGAAGGTGGCTCAAGATTCCTCACTGGCCGTGACATAATGAGCCTGTGGGATCGCCTG
TGCAAGGTGTTACATGTGAGGAAGGTAACTGTCATGGATATATCCAAGAAACATGGAATG
GACTACAGACTTCTTCATGCAGTCATAAGTGGGCACCCTTGGTACGGCCAATGGGGATAC
AAGTTTGGTGCCGGCAGCTTTGCTCTCACCTCAGACACCTACCGAAATGCAGTAGACATG
CTTTCCAGCATAAACCTGGCGCTGTACTTCTCGCACCGCAGCCAAATTAGGACTCCATTG
CAGAACACAATCGCTCTTTATTGGGCGCTCTCTAATCGCCAACTAGTAACCCTCCGGGAT
CTTTTCCGCTTCATTATGCACCTCCTCCATCAAGGTCAAAAGATGTCAAAACCCTCAGCA
GACAAGCACAAGGAGCTTACATCTAATGAGCTGTGTGCATGGACTAAAGAAGATCTACAT
AGAGCAGAAGGTGCAATGCTCAAGGTTCTCCAGGTCGTCCAAACTGGACAGTGGGTATCT
TGGCGGGCACTGAGGGGTGCTGCGTCGAAGGCTGTTGATTCGCAAGAGCTGCTTGATTAT
TCTCTCCGAGGACTGGGTGGGAAACAACTGGATAATGGCCTTTGTGTTGCTGTCCGTTGC
AATGCCGGTACTAGTGCAATCGAGTACAGGCTGGAATCTTCCTCCGTTCGGTCTCCAGCA
AATGCAGCTACATTTGGACCTTCTGTTGACCAACTGTTGCATGATCTAAGGTTCCTCTAC
GATGCTTTGCTGAACCCGGAGTCCATGTTGTCTTCACAACCAGAGGTGGTTGGTGCATCA
GCACACAGCGCAGCAGCAAAGATAATTGATTGCAAGCAGTTCATCAAACATTATGATGAG
CATGCTCTGCGGACTCCTTCAAATCCATTCCTGCTCTGTGTGAGGTGCTCCATTGAACTG
CTTGATCACCCAAAAGATTACACGACACCTCCAGAAGAACTTGTACTTCTACCAGCAAGT
GCTACCCTAGGTGATCTGAAAGTACAGGCTTCAAAGGCTTTCCAAGAAACGTACCTGATG
TTCCAAAGCTTCCAGACTGAACAGCTCCCTGACTTTCCAAACTTCAGTGATACAACCCCC
GTGAAGCATGTGCTTGGATCAGGCCAGTTGCTTCGAGTAAGGGGACGTTGCACTGGGGAT
TACAGGAGAATTGTACAGTTCAGGATGGAGAGGGGTTTGGAGAACTGGACGGTGGACTGC
TCATGTGGGGCCAAGGATGATGATGGGGAACGGATGCTAGCTTGTGACATATGTGGAGTC
TGGCAGCATACCAGGTGCTCTGGGATAAGTGATTTTGAGGAAGTCCCTGAAAATTTCATC
TGCAGAAAGTGTGCTAGTCCACGCAAGGGAGACGGACGTGGGGGTGGGGGTAGCAACGGT
GGTGGAACAATGGAGGTTACTGCGTCTGGGAGGTGCAAGGATGAGATTGGAGCATCAGTT
GGTGGAGCAGGCAAGTATGGGCGCATGGCAACAGTTGGATGA

Peptide Sequence

PEP ID

Zm00001d012233_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:8:170593617:170597148:-1 gene:Zm00001d012233 transcript:Zm00001d012233_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:PHD finger protein

Sequence

MVVNGRPLKRARARVEARDFARFPAAGDCGAAGTFREAVRGFLAKHARLLPLPSIFSPAA
AAAPPHLLIWRVSLRVGEAGEEESGGGVELNVVEEDVLRSRSVYCDQCRVVGWSGHPVCV
KRYHFIIENDSSHLSGRRRTCCLRCGTPMAAGESRCALCNFDMDGEEIEECAYLHLDDPT
HLLHAVVHANGYGHLLRVNGREGGSRFLTGRDIMSLWDRLCKVLHVRKVTVMDISKKHGM
DYRLLHAVISGHPWYGQWGYKFGAGSFALTSDTYRNAVDMLSSINLALYFSHRSQIRTPL
QNTIALYWALSNRQLVTLRDLFRFIMHLLHQGQKMSKPSADKHKELTSNELCAWTKEDLH
RAEGAMLKVLQVVQTGQWVSWRALRGAASKAVDSQELLDYSLRGLGGKQLDNGLCVAVRC
NAGTSAIEYRLESSSVRSPANAATFGPSVDQLLHDLRFLYDALLNPESMLSSQPEVVGAS
AHSAAAKIIDCKQFIKHYDEHALRTPSNPFLLCVRCSIELLDHPKDYTTPPEELVLLPAS
ATLGDLKVQASKAFQETYLMFQSFQTEQLPDFPNFSDTTPVKHVLGSGQLLRVRGRCTGD
YRRIVQFRMERGLENWTVDCSCGAKDDDGERMLACDICGVWQHTRCSGISDFEEVPENFI
CRKCASPRKGDGRGGGGSNGGGTMEVTASGRCKDEIGASVGGAGKYGRMATVG

Transcript Sequence

Transcript ID

Zm00001d012233_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:170593617:170597148:-1 gene:Zm00001d012233 gene_biotype:protein_coding transcript_biotype:protein_coding description:PHD finger protein

Sequence

ACCCCACCCACGATTAACCCTGGTTAGCGCTCTGCCACGACCTGACGAGCCCATTCCACC
ATAGCATGCATAGACCCACTCCACTGTACGCCACGCACGATTACGTGGGCCCGACATTTG
CTCCGTCCCCTCTGGTGCACAAAGACCAGGCGCACCTGATCGTGCTTCACCTCGAAGGAA
TCGACCCCATCACCATCCTCCTCGTTATCTCGCAGCTACCGCCGCCGCCGCAAACCCTAA
CCTGAGTTCCGATCCGGTTAATCGACGACGAGGAAGACGACGGTGCGTTGCAGATCTGAG
GGGATCTGACGACGGCGGCGGAGGGGGAGATGGTGGTCAACGGCCGGCCGCTGAAGAGGG
CGAGGGCGCGGGTCGAGGCCAGGGACTTCGCGAGGTTCCCGGCGGCCGGAGACTGCGGGG
CGGCCGGGACGTTCAGGGAGGCGGTGAGAGGGTTCCTCGCAAAGCATGCGAGGCTGCTCC
CGTTGCCGTCCATCTTCTCTCCGGCGGCCGCGGCCGCCCCGCCGCACCTGCTGATCTGGA
GGGTGTCCCTAAGGGTCGGGGAGGCCGGGGAGGAAGAGAGCGGCGGCGGGGTAGAGCTCA
ACGTCGTTGAGGAGGATGTGCTCCGATCCCGATCTGTGTATTGTGACCAGTGCAGAGTCG
TGGGCTGGAGTGGACACCCGGTCTGCGTGAAGCGGTACCATTTCATCATCGAGAACGACA
GTAGCCACCTTTCTGGCCGCCGGCGCACCTGCTGCCTCCGCTGCGGAACACCCATGGCCG
CTGGAGAATCAAGGTGTGCTCTGTGCAATTTCGATATGGATGGGGAGGAGATTGAAGAGT
GTGCATACCTGCATCTGGATGACCCCACCCACTTGCTGCACGCTGTGGTGCATGCAAATG
GTTATGGGCATCTTCTCAGGGTAAATGGGCGTGAAGGTGGCTCAAGATTCCTCACTGGCC
GTGACATAATGAGCCTGTGGGATCGCCTGTGCAAGGTGTTACATGTGAGGAAGGTAACTG
TCATGGATATATCCAAGAAACATGGAATGGACTACAGACTTCTTCATGCAGTCATAAGTG
GGCACCCTTGGTACGGCCAATGGGGATACAAGTTTGGTGCCGGCAGCTTTGCTCTCACCT
CAGACACCTACCGAAATGCAGTAGACATGCTTTCCAGCATAAACCTGGCGCTGTACTTCT
CGCACCGCAGCCAAATTAGGACTCCATTGCAGAACACAATCGCTCTTTATTGGGCGCTCT
CTAATCGCCAACTAGTAACCCTCCGGGATCTTTTCCGCTTCATTATGCACCTCCTCCATC
AAGGTCAAAAGATGTCAAAACCCTCAGCAGACAAGCACAAGGAGCTTACATCTAATGAGC
TGTGTGCATGGACTAAAGAAGATCTACATAGAGCAGAAGGTGCAATGCTCAAGGTTCTCC
AGGTCGTCCAAACTGGACAGTGGGTATCTTGGCGGGCACTGAGGGGTGCTGCGTCGAAGG
CTGTTGATTCGCAAGAGCTGCTTGATTATTCTCTCCGAGGACTGGGTGGGAAACAACTGG
ATAATGGCCTTTGTGTTGCTGTCCGTTGCAATGCCGGTACTAGTGCAATCGAGTACAGGC
TGGAATCTTCCTCCGTTCGGTCTCCAGCAAATGCAGCTACATTTGGACCTTCTGTTGACC
AACTGTTGCATGATCTAAGGTTCCTCTACGATGCTTTGCTGAACCCGGAGTCCATGTTGT
CTTCACAACCAGAGGTGGTTGGTGCATCAGCACACAGCGCAGCAGCAAAGATAATTGATT
GCAAGCAGTTCATCAAACATTATGATGAGCATGCTCTGCGGACTCCTTCAAATCCATTCC
TGCTCTGTGTGAGGTGCTCCATTGAACTGCTTGATCACCCAAAAGATTACACGACACCTC
CAGAAGAACTTGTACTTCTACCAGCAAGTGCTACCCTAGGTGATCTGAAAGTACAGGCTT
CAAAGGCTTTCCAAGAAACGTACCTGATGTTCCAAAGCTTCCAGACTGAACAGCTCCCTG
ACTTTCCAAACTTCAGTGATACAACCCCCGTGAAGCATGTGCTTGGATCAGGCCAGTTGC
TTCGAGTAAGGGGACGTTGCACTGGGGATTACAGGAGAATTGTACAGTTCAGGATGGAGA
GGGGTTTGGAGAACTGGACGGTGGACTGCTCATGTGGGGCCAAGGATGATGATGGGGAAC
GGATGCTAGCTTGTGACATATGTGGAGTCTGGCAGCATACCAGGTGCTCTGGGATAAGTG
ATTTTGAGGAAGTCCCTGAAAATTTCATCTGCAGAAAGTGTGCTAGTCCACGCAAGGGAG
ACGGACGTGGGGGTGGGGGTAGCAACGGTGGTGGAACAATGGAGGTTACTGCGTCTGGGA
GGTGCAAGGATGAGATTGGAGCATCAGTTGGTGGAGCAGGCAAGTATGGGCGCATGGCAA
CAGTTGGATGACTGTACATAATGTAGTGAAACGTAAATAGTGAGATGGAGAGTAGTAAGC
TGCACCTAAAGGCTTTTGTGGACCTTGCGTGGTGTTAATGGATCTTGTTGCTG