Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012128_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:8:168572572:168575961:1 gene:Zm00001d012128 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ARR-B-transcription factor 7 description:Putative two-component response regulator family protein

Sequence

ATGAGTGATCGGACCGTGATCGCTCGGACAGGAGGCATTTCTTCCTGTGTCACCACATGC
GGTTTGGCTAGCGTTGCTCTCCAAATTCTCCGAGAGAGGAGAAACAAGTTTGACATTGTA
ATCAGTGATGTCAACATGCCTGACATGGATGGTTTCAAGCTTCTCGAACTCATTGGGCTT
GAGATGGATCTACCTGTTATAATGATGTCCATAGACGGAGAGACAAGTAGAGTGATGAAA
GGTGTACATCATGGTGCGTGTGACTATCTCCTCAAGCCTGTTCGGATGAAGGAACTCCGA
AACATTTGGCAACATGTGTATAGGAAGAAAATGCACGAGGTGAAAGAGATTGAAGGTAAT
GACAGCTGCGATGATCTCCCAATATTTAGAAATGGTTTAGATGGATTGGATGAGAGGGGC
CTATTTATGAGAGCTGACACTGATACCATGAGGAAGAGAAAAGAAGTGGATAAGGACCAT
GCAGACCAGGACTCAAGTGATGGAGCTACTGCTAAGAAGGCTAGAGTTGTCTGGTCTGTT
GACCTTCACCAAAAGTTTGTAAATGCTGTCAACCAAATTGGATTTGACAAAGTGGGGCCG
AAGAAAATACTTGATCTTATGAATGTTCATGGCCTGACAAGAGAGAACGTGGCCAGCCAT
CTTCAGAAATATCGCCTCTACTTGAGTAGGTTGCAAAAGCAGAACGAAGAAAGGATAATG
GGTGCGGCTAGGCAAGATTTCAATCAAAAGGGGCCATCAGATAATCTTAACCTCCGAAGT
TCCTTCCAAGAGCAGCCAGGAAACCTTACCAATGGATTTCAGCATAGTTCTCAGAAGGTC
CAATCTCAGACCAACATTCTCGATCCTCATCTGGACGACACGAAGACTTCAGTGCCCTTG
AAAGTGCCAGATAAAAATGGAACTTCAGCAAGTGATGCTGCTGACCATCAGAACATCACC
GGTGTTTCACCTTTAGGTGGGGGTGGGGTGTTCTCTTTTGAAAGAATGCCAGTGAATCAG
GACACGAAGCTATCGGAAGCCATGATCTTGGAATGTCAGTCCTGGAGTGGTGGTGTGCCA
CCAAAGCAGTTCATGCAGTATCCAAAGCATAACCATGAGCGCTGCGACCTTCTAGGAGAC
TATTCTTGCCTGCCCAAACCGGACTTAGAGCACCCAATTGCGCCTAGCCATCTTTATGCC
CCACCACCTGTAATATCGATGAGTTGCAGTGTGGAGGGAGATGTCAGAGACTTCTCAGAT
GTAAAACCAGATCTTCTTGGCTGTATGAAGTCCTTATCACCGGCACTGACATGTACAGTT
GAGTCAGTTTCTGCTCAACTCAGTGACAGTGTTGTGAGCTCAACTAACAATGACAAGAAG
ATTTCCAGTGTGGAGGGGTTGTCCAGCGTTAAAGATTGTGACTTTGATCAGGAAAGGAAC
CAAGCCATTTTGCTTACTTCAGAAGAGGCAAGTATATTATGCAGCACTGATTTGACTTGT
CTACCTGATGAACTGTCCGGCTATCAACTTCAAGGCGTCTCCTTCGGGGATATAGGACTG
AATAGCATCGATTTATTCCAGTGCAATGATACAATGGTACTACCTGGACTGCAGAATAAC
TGGTATGATGATCCAGATTTTAGCAATGAAACTATGGAGTTCCCGTTGCTAGACGGAGGT
CTGTTTGCATAA

Peptide Sequence

PEP ID

Zm00001d012128_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:8:168572572:168575961:1 gene:Zm00001d012128 transcript:Zm00001d012128_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ARR-B-transcription factor 7 description:Putative two-component response regulator family protein

Sequence

MSDRTVIARTGGISSCVTTCGLASVALQILRERRNKFDIVISDVNMPDMDGFKLLELIGL
EMDLPVIMMSIDGETSRVMKGVHHGACDYLLKPVRMKELRNIWQHVYRKKMHEVKEIEGN
DSCDDLPIFRNGLDGLDERGLFMRADTDTMRKRKEVDKDHADQDSSDGATAKKARVVWSV
DLHQKFVNAVNQIGFDKVGPKKILDLMNVHGLTRENVASHLQKYRLYLSRLQKQNEERIM
GAARQDFNQKGPSDNLNLRSSFQEQPGNLTNGFQHSSQKVQSQTNILDPHLDDTKTSVPL
KVPDKNGTSASDAADHQNITGVSPLGGGGVFSFERMPVNQDTKLSEAMILECQSWSGGVP
PKQFMQYPKHNHERCDLLGDYSCLPKPDLEHPIAPSHLYAPPPVISMSCSVEGDVRDFSD
VKPDLLGCMKSLSPALTCTVESVSAQLSDSVVSSTNNDKKISSVEGLSSVKDCDFDQERN
QAILLTSEEASILCSTDLTCLPDELSGYQLQGVSFGDIGLNSIDLFQCNDTMVLPGLQNN
WYDDPDFSNETMEFPLLDGGLFA

Transcript Sequence

Transcript ID

Zm00001d012128_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:168572572:168575961:1 gene:Zm00001d012128 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ARR-B-transcription factor 7 description:Putative two-component response regulator family protein

Sequence

GGGCTTCTTCTATCTTCTTGTTTTTGCTTGTAGATGCTATGAGTGATCGGACCGTGATCG
CTCGGACAGGAGGCATTTCTTCCTGTGTCACCACATGCGGTTTGGCTAGCGTTGCTCTCC
AAATTCTCCGAGAGAGGAGAAACAAGTTTGACATTGTAATCAGTGATGTCAACATGCCTG
ACATGGATGGTTTCAAGCTTCTCGAACTCATTGGGCTTGAGATGGATCTACCTGTTATAA
TGATGTCCATAGACGGAGAGACAAGTAGAGTGATGAAAGGTGTACATCATGGTGCGTGTG
ACTATCTCCTCAAGCCTGTTCGGATGAAGGAACTCCGAAACATTTGGCAACATGTGTATA
GGAAGAAAATGCACGAGGTGAAAGAGATTGAAGGTAATGACAGCTGCGATGATCTCCCAA
TATTTAGAAATGGTTTAGATGGATTGGATGAGAGGGGCCTATTTATGAGAGCTGACACTG
ATACCATGAGGAAGAGAAAAGAAGTGGATAAGGACCATGCAGACCAGGACTCAAGTGATG
GAGCTACTGCTAAGAAGGCTAGAGTTGTCTGGTCTGTTGACCTTCACCAAAAGTTTGTAA
ATGCTGTCAACCAAATTGGATTTGACAAAGTGGGGCCGAAGAAAATACTTGATCTTATGA
ATGTTCATGGCCTGACAAGAGAGAACGTGGCCAGCCATCTTCAGAAATATCGCCTCTACT
TGAGTAGGTTGCAAAAGCAGAACGAAGAAAGGATAATGGGTGCGGCTAGGCAAGATTTCA
ATCAAAAGGGGCCATCAGATAATCTTAACCTCCGAAGTTCCTTCCAAGAGCAGCCAGGAA
ACCTTACCAATGGATTTCAGCATAGTTCTCAGAAGGTCCAATCTCAGACCAACATTCTCG
ATCCTCATCTGGACGACACGAAGACTTCAGTGCCCTTGAAAGTGCCAGATAAAAATGGAA
CTTCAGCAAGTGATGCTGCTGACCATCAGAACATCACCGGTGTTTCACCTTTAGGTGGGG
GTGGGGTGTTCTCTTTTGAAAGAATGCCAGTGAATCAGGACACGAAGCTATCGGAAGCCA
TGATCTTGGAATGTCAGTCCTGGAGTGGTGGTGTGCCACCAAAGCAGTTCATGCAGTATC
CAAAGCATAACCATGAGCGCTGCGACCTTCTAGGAGACTATTCTTGCCTGCCCAAACCGG
ACTTAGAGCACCCAATTGCGCCTAGCCATCTTTATGCCCCACCACCTGTAATATCGATGA
GTTGCAGTGTGGAGGGAGATGTCAGAGACTTCTCAGATGTAAAACCAGATCTTCTTGGCT
GTATGAAGTCCTTATCACCGGCACTGACATGTACAGTTGAGTCAGTTTCTGCTCAACTCA
GTGACAGTGTTGTGAGCTCAACTAACAATGACAAGAAGATTTCCAGTGTGGAGGGGTTGT
CCAGCGTTAAAGATTGTGACTTTGATCAGGAAAGGAACCAAGCCATTTTGCTTACTTCAG
AAGAGGCAAGTATATTATGCAGCACTGATTTGACTTGTCTACCTGATGAACTGTCCGGCT
ATCAACTTCAAGGCGTCTCCTTCGGGGATATAGGACTGAATAGCATCGATTTATTCCAGT
GCAATGATACAATGGTACTACCTGGACTGCAGAATAACTGGTATGATGATCCAGATTTTA
GCAATGAAACTATGGAGTTCCCGTTGCTAGACGGAGGTCTGTTTGCATAAATGCCTCAGC
GGGCCCTATCTTTTGATCATGCCCTTATGTGAGTTCTTTGGTATGTTCCCGTATAGTGCC
TCCTGTAGGGCTATACTAATCTAACTTTATCATGTGGTGGAAGGGTTTAATTTGTAGTCT
CTCCACTTTTGATAATTGTCTGTATTATAGACCGTGCCATGGTACAATGACTGCAATATA
TACTCTTCACAATGATC