Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d012119_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:8:168443082:168449952:1 gene:Zm00001d012119 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:JUMONJI-transcription factor 11 description:Lysine-specific demethylase REF6
Sequence	ATGGCGTCCTCGCAAGGGGAGTCGGTACCCCCGTGGCTCAAGTCTCTCCCTCTGGCGCCC GAGTTCCGCCCCACCGTGGCCGAGTTCGCCGACCCCATCGCCTACCTCCTCAAGATCGAG CCTGCCGCGGCGCCATTCGGCATCTGCAAGATCGTGCCACCGCTCCCGCCGCCGCCCAAG CGGACCACGCTCGGTAACCTCTCCCGCTCCTTCGCCGCGCTCCACCCGGACGATCCCACC CCGACATTCCCCACCCGGCACCAGCAGCTGGGCATCTGCCCGCGCCGCCCCCGCCCCGCG CTCAAGCCCGTGTGGCTCTCTCCCCACCGCTACACGCTCCCCAAGTTCGAGGCCAAGGCC GGCGCCTCCCGGAAGGCGCTGCTCGCGCGCCTCAATGTCCCCGCCTCCAAGCAGCTCTCG CCGCTCGACGTCGAGGCGCTCTTCTGGCGCTCATCGGCCGACCGCCCCGTCGTCGTGGAG TACGCCAGCGACATGCCTGGCTCCGGGTTCGCGCCCTGCGCCGCACGCCTGACGCAGCTG CCCCCGGCGAACGTGGGCGAGACGGCGTGGAACATGCGCCGTGTGGCCAGGAGCCCCGCG TCTCTGCTGCGCTTCGTGCGGGAGGAGGTGCCCGGGGTCACGTCGCCGATGCTCTACGTC GGCATGATGTTCAGTTGGTTCGCCTGGCACGTCGAGGACCATGACCTGCACAGCCTCAAC TACATGCATTACGGGGCTCCCAAGACGTGGTACGGGGTGCCGCGCGACGCTGCACTCGCC TTCGTGGAGGTGGTTCGCGTCCATGGGTATGGCGGGGAGGTGAACTCCTTAGAAACCTTC GCGATGCTGGGTGATAAGACGACAGTGATGTCCCCTGAAGTGCTCGTGGATTCAGGGATT CCCTGCTGCAGATTAGTTCAGAGTGCAGGGGAGTTCGTGGTTACTTTCCCCGGAGCATAT CACAGCGGGTTCAGTCATGGGTTCAATTGTGGGGAAGCGTCAAATATAGCCACTCCTGAA TGGTTGATAGTTGCGAAAGAGGCAGCAGTCCGGAGAGCTTCCATCAATCGTCCTCCCATG GTTTCACACTGTCAGTTGCTCTATGAACTTGCGTTGTCATTGTGCTTGAGGGATCCATCA AATGACGTTATGGAACCACGAAGCTGTAGATTGAAGGAGAAGAAGAAAAGTGAAGGGGAC CAATTGATCAAAAAGATTTTTGTGCAAAATGTTATTGAAGACAATAAACTGCTTGGTCAT TTTCTGAGTGATGGGTCTCCTTGCATTATTCTTCCAGTCAATTACAATGATGGCTCTCCA CTATCAACTTTGCTCTCAAAATTTCAGTCAACAACTGATTCAAGGATATCGCATGGCCAG TGCAGTAAGGCAGAAGCTCCAAAAGACTCCAGACGCTTACCAATGGATGGGGCTGACAAG AACCGGGAATTGTCATCATCCAACAAAAATTCATTGTCAGCCTTCTCAGGAAAGACAGTC CCACTCCCACCTAGAATCTGCATACATGAATGTGCAAATGTGACTGGGGCATCACACGCA CATAATGCAGAAAATGACAAGGTGGATATGAACAGTGCTGCTGGGCTTTTAGACCAGGGT TTATTATCCTGTGTCACCTGTGGGATTTTGAGTTTTTCATGTGTGGCAGTGATCAAACCA AGGGAGTGTGCAGCAAAATGGTTGATGGCTGCTGATTCTAGTTTGATCAACGATCGGCTT GCTAGTTCTGGAGAACATGATATAGATGCATTACAAGGTGGGAGGACAACTGGTGGAATT TTACAATATCCCAGAATAGAAGTAGAAGCAAAATTGCTGGCTGGAGAAATGGATTTCGAG TATGATTGGAAGGATATTCTTTTTAAAGAGGTCACTATCAAGGATAGGGAGAAGATACAG GAAGTTGTGCGGGATGAGGAAGCAATACCAACAAATAGTGATTGGGCTGTAAAACTGGGC ATTAATCTGTACTATAGTGCTAATCTTGCTAAGTCTCCTTTATACAGTAAGCAAGTTCCA TACAATAGAGTTATCTATGAGGCATTTGGCTGCGGTTCTCCCAATGACTCACCAGTGAAG CTGAAGACTTATTCCAGAAGGCAATGCAGGGCGAAGAAAATAGTCTTGGCTGGCAGGTGG TGTGGAAAAGTATGGATGTCAAACCAGGTTCATCCATACCTGGCTGACAGAATCAAAAAT CATGAGCCGAAAGAAATCGATGAAACATTTCCTTCTGATCAGAAATCCCATGCTGAACCT GTTGAAAATTCAAGTAGAGAGGCAGCCTCCACAAGAAAGAGTAGCAGCAGAACAATTGAA GGAAAAACAAGCAAGAGGGAGAAAGAACAGTTGGAGAAAGCTAATGCCAAGAAGCCAAAA TTTACTGAAGAGGACAACTCCAAATCATTGGAGGGTACTGCTGAAGCCTCCACACAGAAG ATAAAGGGCAGATCAGTTCTAGAAAAAACAAGCAAGAAGGAGAAAGCGTATACCAAGAAG CTAAAGCATACTGAAAAGGTCTCGGAAGCACTAAAAGGTCCTTCAGAAGCCTCCTTCCCT GCACCAGCTGGGATGGTAGTCCGCAGCAGCTCTAGGATCGCCAATAGGAAAATCATGTTG AAATCAAAGATGGAAGAAGAGGATAATGGCTCAGCTGACCGTCCAAAGTCAAAGGTCGAA GACGACAAAGATAATCCTGCTGGCCGTTCAAGAGCAAAACCACTAAGGCAAAAGACTAAA GTAGACGCGAAGAAGAAAACGAAGGAAACTAGAGTAGAAAAGCGAAAGGCTCCCAGTCCA GCTTCTCAGAAGGACGAAGAGGAGCAATCAGATGATGTCGAGGGACGTTCTACCACTAAA CAACGGCTGTCTTTACGTAAGAAGGGGGCTAAAACAGAAGGAAAACAGCGAATGGAGAAA CCCAGATTCGGGGGAAGTGCTCCTCCCCCAAGCTCTCCGAAGCGCAAGGAAGAGTACGTG TGCGACATCGAAGGCTGCTCCATGAGTTTCGGCACAGAGCAGGCGCTGTCCCTGCACAAG AACGACATCTGCCCGGAGAAGGGCTGCTGCAGGAAGTTCTTCTCGCACAAGTACCTGCAG CAGCACCGCAAGGTCCACGCCGACGACCGGCCGCTGAAGTGCCCGTGGGAGGGCTGCGGC ATGGCGTTCAAGTGGCCGTGGGCCAGGACGGAGCACGTGAGGGTCCACACGGGGGACAGG CCCTACGTCTGCCTCGAGCCCGGGTGCGGCCAGACGTTCAGGTTCGTCTCCGATTTCAGC CGCCACAAGCGCAGGACGGGCCATGGCGCGTCCAAGAAGGCGAAAGCGAAGAAGCAAGGC AAAGCAGCAGTAACTTAG

Peptide Sequence

PEP ID	Zm00001d012119_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:8:168443082:168449952:1 gene:Zm00001d012119 transcript:Zm00001d012119_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:JUMONJI-transcription factor 11 description:Lysine-specific demethylase REF6
Sequence	MASSQGESVPPWLKSLPLAPEFRPTVAEFADPIAYLLKIEPAAAPFGICKIVPPLPPPPK RTTLGNLSRSFAALHPDDPTPTFPTRHQQLGICPRRPRPALKPVWLSPHRYTLPKFEAKA GASRKALLARLNVPASKQLSPLDVEALFWRSSADRPVVVEYASDMPGSGFAPCAARLTQL PPANVGETAWNMRRVARSPASLLRFVREEVPGVTSPMLYVGMMFSWFAWHVEDHDLHSLN YMHYGAPKTWYGVPRDAALAFVEVVRVHGYGGEVNSLETFAMLGDKTTVMSPEVLVDSGI PCCRLVQSAGEFVVTFPGAYHSGFSHGFNCGEASNIATPEWLIVAKEAAVRRASINRPPM VSHCQLLYELALSLCLRDPSNDVMEPRSCRLKEKKKSEGDQLIKKIFVQNVIEDNKLLGH FLSDGSPCIILPVNYNDGSPLSTLLSKFQSTTDSRISHGQCSKAEAPKDSRRLPMDGADK NRELSSSNKNSLSAFSGKTVPLPPRICIHECANVTGASHAHNAENDKVDMNSAAGLLDQG LLSCVTCGILSFSCVAVIKPRECAAKWLMAADSSLINDRLASSGEHDIDALQGGRTTGGI LQYPRIEVEAKLLAGEMDFEYDWKDILFKEVTIKDREKIQEVVRDEEAIPTNSDWAVKLG INLYYSANLAKSPLYSKQVPYNRVIYEAFGCGSPNDSPVKLKTYSRRQCRAKKIVLAGRW CGKVWMSNQVHPYLADRIKNHEPKEIDETFPSDQKSHAEPVENSSREAASTRKSSSRTIE GKTSKREKEQLEKANAKKPKFTEEDNSKSLEGTAEASTQKIKGRSVLEKTSKKEKAYTKK LKHTEKVSEALKGPSEASFPAPAGMVVRSSSRIANRKIMLKSKMEEEDNGSADRPKSKVE DDKDNPAGRSRAKPLRQKTKVDAKKKTKETRVEKRKAPSPASQKDEEEQSDDVEGRSTTK QRLSLRKKGAKTEGKQRMEKPRFGGSAPPPSSPKRKEEYVCDIEGCSMSFGTEQALSLHK NDICPEKGCCRKFFSHKYLQQHRKVHADDRPLKCPWEGCGMAFKWPWARTEHVRVHTGDR PYVCLEPGCGQTFRFVSDFSRHKRRTGHGASKKAKAKKQGKAAVT

Transcript Sequence

Transcript ID	Zm00001d012119_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:168443082:168449952:1 gene:Zm00001d012119 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:JUMONJI-transcription factor 11 description:Lysine-specific demethylase REF6
Sequence	ACTGAAGCAACTGAAGCAGCGGTTTCTGTAAAGCGGGCACGCTCCCCTTCGCCCCCCCTC CCGTTCTCCAGTCCACTCCACTCCACTCCACTCCCGTTCCCCTCCCAATTCCCAAAGGCC AAAGCCCTCCTCTGCTCCGCTCTGTTCCGCTCTGCTCCGACCAAATGCGCGATTAGAGCC GCCCGCGAGATCGATCCCCGCGCGGCCAAGGATCATCGGCCGCCATGGCGTCCTCGCAAG GGGAGTCGGTACCCCCGTGGCTCAAGTCTCTCCCTCTGGCGCCCGAGTTCCGCCCCACCG TGGCCGAGTTCGCCGACCCCATCGCCTACCTCCTCAAGATCGAGCCTGCCGCGGCGCCAT TCGGCATCTGCAAGATCGTGCCACCGCTCCCGCCGCCGCCCAAGCGGACCACGCTCGGTA ACCTCTCCCGCTCCTTCGCCGCGCTCCACCCGGACGATCCCACCCCGACATTCCCCACCC GGCACCAGCAGCTGGGCATCTGCCCGCGCCGCCCCCGCCCCGCGCTCAAGCCCGTGTGGC TCTCTCCCCACCGCTACACGCTCCCCAAGTTCGAGGCCAAGGCCGGCGCCTCCCGGAAGG CGCTGCTCGCGCGCCTCAATGTCCCCGCCTCCAAGCAGCTCTCGCCGCTCGACGTCGAGG CGCTCTTCTGGCGCTCATCGGCCGACCGCCCCGTCGTCGTGGAGTACGCCAGCGACATGC CTGGCTCCGGGTTCGCGCCCTGCGCCGCACGCCTGACGCAGCTGCCCCCGGCGAACGTGG GCGAGACGGCGTGGAACATGCGCCGTGTGGCCAGGAGCCCCGCGTCTCTGCTGCGCTTCG TGCGGGAGGAGGTGCCCGGGGTCACGTCGCCGATGCTCTACGTCGGCATGATGTTCAGTT GGTTCGCCTGGCACGTCGAGGACCATGACCTGCACAGCCTCAACTACATGCATTACGGGG CTCCCAAGACGTGGTACGGGGTGCCGCGCGACGCTGCACTCGCCTTCGTGGAGGTGGTTC GCGTCCATGGGTATGGCGGGGAGGTGAACTCCTTAGAAACCTTCGCGATGCTGGGTGATA AGACGACAGTGATGTCCCCTGAAGTGCTCGTGGATTCAGGGATTCCCTGCTGCAGATTAG TTCAGAGTGCAGGGGAGTTCGTGGTTACTTTCCCCGGAGCATATCACAGCGGGTTCAGTC ATGGGTTCAATTGTGGGGAAGCGTCAAATATAGCCACTCCTGAATGGTTGATAGTTGCGA AAGAGGCAGCAGTCCGGAGAGCTTCCATCAATCGTCCTCCCATGGTTTCACACTGTCAGT TGCTCTATGAACTTGCGTTGTCATTGTGCTTGAGGGATCCATCAAATGACGTTATGGAAC CACGAAGCTGTAGATTGAAGGAGAAGAAGAAAAGTGAAGGGGACCAATTGATCAAAAAGA TTTTTGTGCAAAATGTTATTGAAGACAATAAACTGCTTGGTCATTTTCTGAGTGATGGGT CTCCTTGCATTATTCTTCCAGTCAATTACAATGATGGCTCTCCACTATCAACTTTGCTCT CAAAATTTCAGTCAACAACTGATTCAAGGATATCGCATGGCCAGTGCAGTAAGGCAGAAG CTCCAAAAGACTCCAGACGCTTACCAATGGATGGGGCTGACAAGAACCGGGAATTGTCAT CATCCAACAAAAATTCATTGTCAGCCTTCTCAGGAAAGACAGTCCCACTCCCACCTAGAA TCTGCATACATGAATGTGCAAATGTGACTGGGGCATCACACGCACATAATGCAGAAAATG ACAAGGTGGATATGAACAGTGCTGCTGGGCTTTTAGACCAGGGTTTATTATCCTGTGTCA CCTGTGGGATTTTGAGTTTTTCATGTGTGGCAGTGATCAAACCAAGGGAGTGTGCAGCAA AATGGTTGATGGCTGCTGATTCTAGTTTGATCAACGATCGGCTTGCTAGTTCTGGAGAAC ATGATATAGATGCATTACAAGGTGGGAGGACAACTGGTGGAATTTTACAATATCCCAGAA TAGAAGTAGAAGCAAAATTGCTGGCTGGAGAAATGGATTTCGAGTATGATTGGAAGGATA TTCTTTTTAAAGAGGTCACTATCAAGGATAGGGAGAAGATACAGGAAGTTGTGCGGGATG AGGAAGCAATACCAACAAATAGTGATTGGGCTGTAAAACTGGGCATTAATCTGTACTATA GTGCTAATCTTGCTAAGTCTCCTTTATACAGTAAGCAAGTTCCATACAATAGAGTTATCT ATGAGGCATTTGGCTGCGGTTCTCCCAATGACTCACCAGTGAAGCTGAAGACTTATTCCA GAAGGCAATGCAGGGCGAAGAAAATAGTCTTGGCTGGCAGGTGGTGTGGAAAAGTATGGA TGTCAAACCAGGTTCATCCATACCTGGCTGACAGAATCAAAAATCATGAGCCGAAAGAAA TCGATGAAACATTTCCTTCTGATCAGAAATCCCATGCTGAACCTGTTGAAAATTCAAGTA GAGAGGCAGCCTCCACAAGAAAGAGTAGCAGCAGAACAATTGAAGGAAAAACAAGCAAGA GGGAGAAAGAACAGTTGGAGAAAGCTAATGCCAAGAAGCCAAAATTTACTGAAGAGGACA ACTCCAAATCATTGGAGGGTACTGCTGAAGCCTCCACACAGAAGATAAAGGGCAGATCAG TTCTAGAAAAAACAAGCAAGAAGGAGAAAGCGTATACCAAGAAGCTAAAGCATACTGAAA AGGTCTCGGAAGCACTAAAAGGTCCTTCAGAAGCCTCCTTCCCTGCACCAGCTGGGATGG TAGTCCGCAGCAGCTCTAGGATCGCCAATAGGAAAATCATGTTGAAATCAAAGATGGAAG AAGAGGATAATGGCTCAGCTGACCGTCCAAAGTCAAAGGTCGAAGACGACAAAGATAATC CTGCTGGCCGTTCAAGAGCAAAACCACTAAGGCAAAAGACTAAAGTAGACGCGAAGAAGA AAACGAAGGAAACTAGAGTAGAAAAGCGAAAGGCTCCCAGTCCAGCTTCTCAGAAGGACG AAGAGGAGCAATCAGATGATGTCGAGGGACGTTCTACCACTAAACAACGGCTGTCTTTAC GTAAGAAGGGGGCTAAAACAGAAGGAAAACAGCGAATGGAGAAACCCAGATTCGGGGGAA GTGCTCCTCCCCCAAGCTCTCCGAAGCGCAAGGAAGAGTACGTGTGCGACATCGAAGGCT GCTCCATGAGTTTCGGCACAGAGCAGGCGCTGTCCCTGCACAAGAACGACATCTGCCCGG AGAAGGGCTGCTGCAGGAAGTTCTTCTCGCACAAGTACCTGCAGCAGCACCGCAAGGTCC ACGCCGACGACCGGCCGCTGAAGTGCCCGTGGGAGGGCTGCGGCATGGCGTTCAAGTGGC CGTGGGCCAGGACGGAGCACGTGAGGGTCCACACGGGGGACAGGCCCTACGTCTGCCTCG AGCCCGGGTGCGGCCAGACGTTCAGGTTCGTCTCCGATTTCAGCCGCCACAAGCGCAGGA CGGGCCATGGCGCGTCCAAGAAGGCGAAAGCGAAGAAGCAAGGCAAAGCAGCAGTAACTT AGTACTAGTAGTTTAGCACCCAAAACCAATGGCGCCCTTCTGAAATGAGTAGCCTTGGAA GGGACAGGAGGAAAACTTGTAGATTCCATTAGCAGTTTAGCACCCAAAACCAATGGTGGT CTCTGCTCACAGTTCCATTAATTGCTAGTTGAACGGGTTCGTTGGAGCCCACAATTAGGT TGGTTCCCTGTGAGTAATTTGGGTAATCATTAAGACATTCTCGTACAGTTT