Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011920_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:8:164595651:164600231:1 gene:Zm00001d011920 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy18a description:WD repeat-containing protein domain phosphoinositide-interacting protein 3

Sequence

ATGGAGCCGCCCGCCTCCTCGCCGGCACCGCCAAACCCTAACCCAGTCCCCGACGATCGG
CCGCTGCAGCAGCAGGTGGAAGAGGCGCGGGCGCCGGAGCCGGAGCCGGAGCGGGAGACG
TCGCCGACGTCCCTGACCACCTCAATCGATCCCACCCCTTCCGGCGGCGAGGAGAGCGAG
AGCGATGACTCCTCGTCAGTCTCGTCGGCGCCCTCCTCCGCCTCCGCTCCCGCGGCCGCT
GCGCCCTTCCCCACGGCCAAGGACCTCCTCCACATCTCCTTCAACCAGGACTACGGCTGC
TTCGCGGCGGGCACCAAGTCGGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATC
TTCCGCCGGGACCTCGCCGCCGATGGCGGCGGCGCCGGGGGAGGGGGTATCGGCGTCGTC
GAGATGTTGTTCCGCTGCAACATACTCGCGCTCGTCGGCGGCGGCGATAACCCCCACTAC
CCGCCCAACAAGGTGATGATCTGGGACGACCACCAGAGCCGGTGCATTGGGGAGCTCTCC
TTCCGCTCCCCCGTCCGAGGCGTCCGCCTCCGGCGCGACCGCATCATCGTGGTGCTCGAG
AACAAAATCTTCGTCTACAACTTTGCGGACCTTAAGCTCGTGCACCAGATCGAGACGGCG
CCCAACCCCAAGGGCCTCTGCGCTGTGTCGCAGCAGCCCGGGTCAATCGTGCTTGTTTGC
CCCGGTGCCCAGAAGGGGCAGGTTAGGGTGGAACACTATGGGGCAAGGAAGACCAAGTTT
ATCAATGCACACACTTCCCGCGTCTCGTGCTTCGCGCTGTCGCAGGACGGGAGGCTCATT
GCAACTGCTAGCACCAAGGGAACACTTGTTAGAATCTACAATGCAGCTGAAGGCAATCTC
TTGCAGGAAGTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAAT
AATTTGCAGTATTTGGCTGTGTCCAGTGATAAAGGAACAATACATGTCTTCAATCTAAAG
ATAAATGTGGGATCGACTGCAAATGATAAACCTATACCTGCTCCAGATCCTGAAGTTTCG
CATATAAGCCCCCCTCTTTCGTTCATTAAGGGTAAGTTCCTTATCTATCCATTCTAA

Peptide Sequence

PEP ID

Zm00001d011920_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:8:164595651:164600231:1 gene:Zm00001d011920 transcript:Zm00001d011920_T004 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy18a description:WD repeat-containing protein domain phosphoinositide-interacting protein 3

Sequence

MEPPASSPAPPNPNPVPDDRPLQQQVEEARAPEPEPERETSPTSLTTSIDPTPSGGEESE
SDDSSSVSSAPSSASAPAAAAPFPTAKDLLHISFNQDYGCFAAGTKSGFRIYNCDPFREI
FRRDLAADGGGAGGGGIGVVEMLFRCNILALVGGGDNPHYPPNKVMIWDDHQSRCIGELS
FRSPVRGVRLRRDRIIVVLENKIFVYNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLVC
PGAQKGQVRVEHYGARKTKFINAHTSRVSCFALSQDGRLIATASTKGTLVRIYNAAEGNL
LQEVRRGADRAEIYSLAFSNNLQYLAVSSDKGTIHVFNLKINVGSTANDKPIPAPDPEVS
HISPPLSFIKGKFLIYPF

Transcript Sequence

Transcript ID

Zm00001d011920_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:164595651:164600231:1 gene:Zm00001d011920 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy18a description:WD repeat-containing protein domain phosphoinositide-interacting protein 3

Sequence

GCCCTCGTCTCGCCCATGGAGCCGCCCGCCTCCTCGCCGGCACCGCCAAACCCTAACCCA
GTCCCCGACGATCGGCCGCTGCAGCAGCAGGTGGAAGAGGCGCGGGCGCCGGAGCCGGAG
CCGGAGCGGGAGACGTCGCCGACGTCCCTGACCACCTCAATCGATCCCACCCCTTCCGGC
GGCGAGGAGAGCGAGAGCGATGACTCCTCGTCAGTCTCGTCGGCGCCCTCCTCCGCCTCC
GCTCCCGCGGCCGCTGCGCCCTTCCCCACGGCCAAGGACCTCCTCCACATCTCCTTCAAC
CAGGACTACGGCTGCTTCGCGGCGGGCACCAAGTCGGGCTTCCGCATCTACAACTGCGAC
CCCTTCCGCGAGATCTTCCGCCGGGACCTCGCCGCCGATGGCGGCGGCGCCGGGGGAGGG
GGTATCGGCGTCGTCGAGATGTTGTTCCGCTGCAACATACTCGCGCTCGTCGGCGGCGGC
GATAACCCCCACTACCCGCCCAACAAGGTGATGATCTGGGACGACCACCAGAGCCGGTGC
ATTGGGGAGCTCTCCTTCCGCTCCCCCGTCCGAGGCGTCCGCCTCCGGCGCGACCGCATC
ATCGTGGTGCTCGAGAACAAAATCTTCGTCTACAACTTTGCGGACCTTAAGCTCGTGCAC
CAGATCGAGACGGCGCCCAACCCCAAGGGCCTCTGCGCTGTGTCGCAGCAGCCCGGGTCA
ATCGTGCTTGTTTGCCCCGGTGCCCAGAAGGGGCAGGTTAGGGTGGAACACTATGGGGCA
AGGAAGACCAAGTTTATCAATGCACACACTTCCCGCGTCTCGTGCTTCGCGCTGTCGCAG
GACGGGAGGCTCATTGCAACTGCTAGCACCAAGGGAACACTTGTTAGAATCTACAATGCA
GCTGAAGGCAATCTCTTGCAGGAAGTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGC
TTGGCTTTCTCGAATAATTTGCAGTATTTGGCTGTGTCCAGTGATAAAGGAACAATACAT
GTCTTCAATCTAAAGATAAATGTGGGATCGACTGCAAATGATAAACCTATACCTGCTCCA
GATCCTGAAGTTTCGCATATAAGCCCCCCTCTTTCGTTCATTAAGGGTAAGTTCCTTATC
TATCCATTCTAACGACATGAGTCACAGAGTCAGGATACCAATGTCTGGGAGAAGTCCCCT
TTTTGGTTTACTGTGAATGATTTTTTATAGGTTTGAAAAGTTCTGTTTCAAAATGTACAA
ACTTATTATTAGCTGTGGTTTGTCTTAAATGGTTCTCCTAGATTTACGCATTGTACTTTG
GGAGTTAGTTTGTTGGACAATAAACCTTAGAAGTTTCAGTATATGTTGCATTTCTCATAT
TAATAAATTTTAAATCGTTACAAGGATACAATGCGTTTTCCTTGATCTCTTATTTAGATT
TGTTTTTGCCCTTTATATTTTAGTATCATCGGTATACTCCTGTTTTTTTTTCGAAAAAAA
TCCATGTAGTTCGACAACATGTAAATTGTATATTTTGAATGTATTTCACATAGTGAATCT
AAAAACCAAGGTTATTAAAATGATGAAACGTTGAAACGCTCATGGGTGAAGTTTTGATTT
TAAACATTTAAACAAAGTTTAAACGTAGTTTTAAACAACGTAGGAAAATACCAATATATC
ATAATTTCAGACAATAACATGAAGTTAAATACCAAAACGTGGCTTACCAAAACTTCACCC
ATGAGACGGATTGGACCCAAAAGTAACTAACATATTGAGCCCAAAAGTAGCTAATGATCT
AAAAACGCATGAAACACTTTGTTTTATAGTTTAGAACGCAAAAACGCCAAAATGTGGTTT
TAACCTCTAATTAGTGTTTTGTAGTTTAAACGTGGTTTAAACGTAGTTTTGATAACACTG
CTAAAAACGTAAGGGGATGTTTGGTTCCCCTGAATAAAATTTAGTTCGTATCACATCGGA
TCGAATGTTTGAATACCAAATACAAGTATCAAACATAGTATAATTATAAAACTAATTACA
TAGATGAAGACTAAACGACAGGACAAATTTATTAAGACTAAGCAATCCATGATTAGTGAA
TGTTTACTGTAGCATCACATGTGCGGATTATGAACTAATTAGGCTTAATAGACTCGTCTT
ACCGTTCAGTTCTTATCTTTCAGTTCTTATCTGTGTAATTAGTTTTATAATTAGACTATA
TTTAATACTTCTAACTAGTATTCAAACATGACAGGACTAAAATTTAATCCCTTGGATTCA
AACAGGAAATCTTTTGTTGTTAACAAATTTATTTTCTTGATTGATGGTTAAATATAGAAA
CATTTGACTTGGCCAAATCTAATGCGACATGCAAAACAATAGAGGGTTTAGGGTCTTGCT
GGAAGCTTAGAATCAAACATTGAGTAGTGACTATTCAATTTTGGTCTCTGTTTTAGTATA
TATTATATATATGGTAGTTACACCGGGATGAGACCATCTAAAATTGGGAGTGGTTCCCTG
ATGTTTCCGATTGCCTTTAAAAAAACAGGCTCATTTTATTTTCCATCAATGGCAGGTGTG
TTGCCGAAATATTTCCACTCTGAGTGGTCAGTAGCTCAGTTCAGGCTCCATGAGGGGGAG
CAGTACATTGTTGCATTTGGACATGAGAAGAATACCGTGTCAGTTGTTGGTATGGATGGA
AGCTTCTACAGATGTCAATTTGACCCAGTTAATGGAGGAGAAATGCTGCAGCTGGAGTGC
TACAGTTTTCTAAAACCGTCAGATCAACCGTAGCGACACACAATTATCATCTATCAATTG
ATGCCCTCCTCCCCGTACCAAGAACTGTACAGTATCTTTGTGCGCCCTCGTTGGCCGGAG
GTCTAAGCTAAATATGATAATATTTTCTTTGTGTATATATATTTCTTGTTGGCTCTGGGT
GATGTATGTTCTGTCTGTGGAAGGGCTAAAACACCCATCTGCAGATGGACGTTATAGAAC
GTGTCGTTATTATTTATGAATGGATTGAATAAAATAGCCTAACAATGTTTCT