Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011890_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:8:164045195:164048986:-1 gene:Zm00001d011890 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cytokinin oxidase 3 description: cytokinin oxidase 3
Sequence

ATGAAGCCGCCATCATCACTGGTGCACTACTTCAAGCTGCTGGTCCTGCTGGCGCTCGCC
AGGCTGACCATGCACGTCCCCGACGAGGACGTGCTCTTGTCCCTCGGCGCGCTGCGCCTC
GACGGCCATTTCAGTTTCCACGACGTCTCCGCCATGGCGCGGGACTTCGGCAACCAGTGC
AGCTTCCTGCCGGCCGCCGTGCTCCACCCTGGCTCGGTCTCCGACATCGCCGCCACCGTT
AGGCACGTCTTCTCCCTGGGCGAGGGCTCGCCGCTCACGGTCGCGGCGCGCGGGCACGGG
CACTCCCTCATGGGCCAGTCCCAGGCCGCCCAGGGGATCGTGGTCAGGATGGAGTCGCTC
CGGGGTCCTAGGCTTCAGGTCAACGACGCCGGCGTGTCGCCACCGTCTGTCGATGCTCCC
GGAGGAGAGCTCTGGATCAACGTGCTGCGTGAGACGCTCAAGCACGGTCTGGCACCCAAG
TCGTGGACGGACTACCTCCATCTCACGGTCGGTGGCACCTTGTCTAATGCGGGGGTCAGC
GGGCAGGCGTTCCGCCACGGACCGCAGGTCAGCAATGTCAATCAACTGGAGATTGTGACA
GGAAGAGGAGATGTCGTTACCTGCTCACCCGATGATAACGCTGATCTCTTCTATGCTGCT
CTCGGTGGTCTTGGTCAGTTCGGGATCATCACCAGAGCAAGGATTGCACTTGAGCCTGCT
CCAAAGATGGTGAGGTGGATAAGAGTTCTTTACTCGGATTTTGAAAGCTTCACCGAGGAC
CAGGAGATGCTGATAATGGCAGAGAACTCCTTTGACTACGTTGAAGGTTTTGTCATCATA
AACAGGACAGGCGTCCTCAACAACTGGAGGGCGTCCTTCAAGCCACAAGACCCAGTCGAA
GCAAGCCATTTTCAGTCGGATGGAAGAGTACTATACTGCCTCGAGCTAACCAAGAACTTC
AATAGTGACGACACTGATACCATGGAACAGGAAGTTACTGTACTGCTATCTCGACTTAGA
TTCATACAGTCTACTCTATTCCACACCGATGTCACGTACCTGGAGTTCTTGGACAGGGTG
CACACCTCTGAGTTGAAACTGAGGGCACAAGGCCTCTGGGAAGTTCCACATCCTTGGCTG
AATCTTCTAATACCGAGGAGCTCCATCCGCAGATTTGCTAAGGAAGTCTTTGGCAAGATC
CTGAAAGATAGCAACAATGGTCCCATATTGCTTTATCCAGTGAACAAATCAAAGTGGGAC
AACAGAACGTCAGTAGTCATACCAGATGAGGAAATTTTCTACCTAGTGGGGTTCCTTTCT
TCAGCACCGTCTCTCTCAGGTTACGGCAGCATTGCACATTCAATGAACCTGAACAAACAG
ATAGTGGAGTTCTGTGAAGAGGCTGGTATTGGGATGAAACAGTATCTGGCACCCTACACC
ACACAGCAGCAGTGGAAAGCCCACTTTGGAGCAAGGTGGGAGACATTTGAACGGAGGAAA
CACAGATATGATCCCCTAGCCATCCTAGCGCCAGGACAGAGAATATTCCCAAAGGCGTCA
CTGCCATTGCCTTTGTGA

Peptide Sequence

PEP ID

Zm00001d011890_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:8:164045195:164048986:-1 gene:Zm00001d011890 transcript:Zm00001d011890_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cytokinin oxidase 3 description: cytokinin oxidase 3
Sequence

MKPPSSLVHYFKLLVLLALARLTMHVPDEDVLLSLGALRLDGHFSFHDVSAMARDFGNQC
SFLPAAVLHPGSVSDIAATVRHVFSLGEGSPLTVAARGHGHSLMGQSQAAQGIVVRMESL
RGPRLQVNDAGVSPPSVDAPGGELWINVLRETLKHGLAPKSWTDYLHLTVGGTLSNAGVS
GQAFRHGPQVSNVNQLEIVTGRGDVVTCSPDDNADLFYAALGGLGQFGIITRARIALEPA
PKMVRWIRVLYSDFESFTEDQEMLIMAENSFDYVEGFVIINRTGVLNNWRASFKPQDPVE
ASHFQSDGRVLYCLELTKNFNSDDTDTMEQEVTVLLSRLRFIQSTLFHTDVTYLEFLDRV
HTSELKLRAQGLWEVPHPWLNLLIPRSSIRRFAKEVFGKILKDSNNGPILLYPVNKSKWD
NRTSVVIPDEEIFYLVGFLSSAPSLSGYGSIAHSMNLNKQIVEFCEEAGIGMKQYLAPYT
TQQQWKAHFGARWETFERRKHRYDPLAILAPGQRIFPKASLPLPL

Transcript Sequence

Transcript ID

Zm00001d011890_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:164045195:164048986:-1 gene:Zm00001d011890 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cytokinin oxidase 3 description: cytokinin oxidase 3
Sequence

CTCTCTCTCTCTCTCTCTCTCTGCCTTCTGTTTCCAGGACGTCCCAACTGCCCAGCGCCG
ACCGGCCGGCCACCATGAAGCCGCCATCATCACTGGTGCACTACTTCAAGCTGCTGGTCC
TGCTGGCGCTCGCCAGGCTGACCATGCACGTCCCCGACGAGGACGTGCTCTTGTCCCTCG
GCGCGCTGCGCCTCGACGGCCATTTCAGTTTCCACGACGTCTCCGCCATGGCGCGGGACT
TCGGCAACCAGTGCAGCTTCCTGCCGGCCGCCGTGCTCCACCCTGGCTCGGTCTCCGACA
TCGCCGCCACCGTTAGGCACGTCTTCTCCCTGGGCGAGGGCTCGCCGCTCACGGTCGCGG
CGCGCGGGCACGGGCACTCCCTCATGGGCCAGTCCCAGGCCGCCCAGGGGATCGTGGTCA
GGATGGAGTCGCTCCGGGGTCCTAGGCTTCAGGTCAACGACGCCGGCGTGTCGCCACCGT
CTGTCGATGCTCCCGGAGGAGAGCTCTGGATCAACGTGCTGCGTGAGACGCTCAAGCACG
GTCTGGCACCCAAGTCGTGGACGGACTACCTCCATCTCACGGTCGGTGGCACCTTGTCTA
ATGCGGGGGTCAGCGGGCAGGCGTTCCGCCACGGACCGCAGGTCAGCAATGTCAATCAAC
TGGAGATTGTGACAGGAAGAGGAGATGTCGTTACCTGCTCACCCGATGATAACGCTGATC
TCTTCTATGCTGCTCTCGGTGGTCTTGGTCAGTTCGGGATCATCACCAGAGCAAGGATTG
CACTTGAGCCTGCTCCAAAGATGGTGAGGTGGATAAGAGTTCTTTACTCGGATTTTGAAA
GCTTCACCGAGGACCAGGAGATGCTGATAATGGCAGAGAACTCCTTTGACTACGTTGAAG
GTTTTGTCATCATAAACAGGACAGGCGTCCTCAACAACTGGAGGGCGTCCTTCAAGCCAC
AAGACCCAGTCGAAGCAAGCCATTTTCAGTCGGATGGAAGAGTACTATACTGCCTCGAGC
TAACCAAGAACTTCAATAGTGACGACACTGATACCATGGAACAGGAAGTTACTGTACTGC
TATCTCGACTTAGATTCATACAGTCTACTCTATTCCACACCGATGTCACGTACCTGGAGT
TCTTGGACAGGGTGCACACCTCTGAGTTGAAACTGAGGGCACAAGGCCTCTGGGAAGTTC
CACATCCTTGGCTGAATCTTCTAATACCGAGGAGCTCCATCCGCAGATTTGCTAAGGAAG
TCTTTGGCAAGATCCTGAAAGATAGCAACAATGGTCCCATATTGCTTTATCCAGTGAACA
AATCAAAGTGGGACAACAGAACGTCAGTAGTCATACCAGATGAGGAAATTTTCTACCTAG
TGGGGTTCCTTTCTTCAGCACCGTCTCTCTCAGGTTACGGCAGCATTGCACATTCAATGA
ACCTGAACAAACAGATAGTGGAGTTCTGTGAAGAGGCTGGTATTGGGATGAAACAGTATC
TGGCACCCTACACCACACAGCAGCAGTGGAAAGCCCACTTTGGAGCAAGGTGGGAGACAT
TTGAACGGAGGAAACACAGATATGATCCCCTAGCCATCCTAGCGCCAGGACAGAGAATAT
TCCCAAAGGCGTCACTGCCATTGCCTTTGTGACAGTTCCTGCTACTTGAAGGATTCTGTA
GAGCATACGTTTACGTTGTACAAAAGTGTAGGTAAAAAGTATCCCCTGTAAAGACAATAT
CTACGGAAGGTAGCTAGCCTGAAGAACACAGCATAGCGACTTTTTTTATAGTGGCCGAAG
ACACCTCAGAGCAATACTTCAAAGTGGAGCAATGTCACCTGAACTCTGACACCTTTGGAG
GCAATCACTGGAGGATCGTAGCGGTCCAAGAAACCTGTATGTTGTTACAGCGTTGATAAT
TGAGACGAGCTGTGATGATCAACTGATCACTAACCAGTATCCCGGTTATCAACAGTGCAG
AAAGTTGCTTGAGGGTAGTAGTGCCTTGATTAACAAATAACACTGCCTGTTATTTCACTT
GTAACTAGCATCTCATCCCACTCAGGAGTGCCTGCTTTGTACCGTACTATCCTCCTCCCG
TGCATCATTCGTCGCACAATCCGTGTAATCCTTGTCGTAACTGTACAAGCGAAACTTGAT
CCGACAGCCACAGAGCCGATTAATC