Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d011872_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:8:163438580:163443056:-1 gene:Zm00001d011872 gene_biotype:protein_coding transcript_biotype:protein_coding description:CSC1-like protein
Sequence	ATGGACGCGGAGGGGTTGCTGGCGTCGGCGGCGATCAATCTGGGACTGGCGCTGGTGGCG CTCTCGCTCTTCTCCCTGCTCAAGAAGCAGCCGGGGAACGCGCCCGTTTACCGTCCCCGC CGGATGGCGACCGGCGACCTTCGTGCTGATGGTGGCTTTCTACCGCTCGGCCACGGGCGA CTAACCCCGTCGTTCCGGTGGATAGGCGCGGCCTTCCGGCTCTCTGAAGACGACGTGCTG CGGCGCCACGGCCTCGACGCTCTCGTCATCGTCCGCCTCTTCAAGTTTGGGATCAATTGT TTCAGTGTTTGCTCGATTGTTGGACTACTGGTCCTTGCTCCAACAAATTATACTAGTGAA GGTCGCGCTGAAATCAGAAGATCGAATTCCATGGAACTGTTCACGGTTACCAATGTGACA CGGGGATCTAATAGGCTTTGGGTGCATTATTCATGCCTTTGCTTTATATCCTTGTATGTG GTATATTTGCTTCATAAGGAATACAGAGAAATTACTATGAGAAGAATTGAGCACTTGAAG CATCACTACAAAAGATATGATCAATACACCGTTTTGGTGCGAGGAATTCCAACATGTCCA GACCATGGGGCTTACGGGTGTTATGTGGATCACTTCTTCTCAAAGCATTATCGGACATAC CGATCATACCAAATCGTACATGACATAGGAAACATTGAGGCATTGCAGAAGCTGGCGTCC TCCATTGAGAAACGGATACAGAGGAAAAGGGAGACCAGTAAATGTAGTCTCTTGGGACGG ATCTGGAGCAAGTTTACATCGGATGCAACAGGCATTCACAACCATGAAGAGAAACTGAAA AATGTGCAAGATACTATCCGCCTCCTACAGTGTGAAAATATGCTTAAACAAAAGGAGGTA CCTGTAGCCTTTGTGTCGTTCAAATCCCGGTTGGAGGCTGCCCAAGCTGCGGAGACGCAG CAGCTCGCCAATCCACTGTCGCTGGTCACAACCTACGCGCCCGAACCAACGGACACGATA TGGAAGAACCTGTCCATCCCGTTCTGGCGCATGGCTACGTACAGGCTCGGAGTCTTCGCT GCCGCGGTCTTGCTGACGGTGTTCTTCACCATCCCCGTAACGGCCGTGCAGGGGATAGCG CAGTTCGAGAAGATGAAGAGGTGGTTCCCGCCGGCGCGAGCTGTGCAGCTCATACCTGGC TTGAACTCCGTGGTGACCGGGTACCTTCCGGGCATGATCCTGAACGGCTTCATCTACCTG GTTCCTTCCGCGATGCTCGGCATGGCCTCGTTCGAAGGCTGCGTCGCCAGCAGCCAGAGG GAGATCAGGGCCTGCGACATGGTCTTCTACTTCTTGCTCGGAAACGTGTTCTTCCTCAGC GTTCTCTCGGGCTCTCTGCTCGACCAGATCGGAGAGTCCTTCACGCACCCCAAGAACATC CCCAACCGTCTCGCGAGCGCTGTTTCTGCGCAGTCGGATTTCTTCATCACGTACATCTTG ACCAACGGCATGTCAGGGTTCTCCTTGGAGGTCCTTCAGTTCGGTCTGTTGATATGGCAG TTTTTAAAGGCGCGTTCAATTGGACACAGCGAGGAACCATATCTGTATGGCTTCCCTTAC TTCCGAGTCGTGCCCGTGGTTTCCATCGCAATATTGATCGGAGTGGTGTACGCTGTGGTT GCGCCCCTTCTGCTCCCGATCCTTCTGGTGTACTTCCTGCTCGGTTACGCAGTGTACATC AACCAGATGGAAGATGTTTATGAGATCACATACGACACATGCGGGCAGTACTGGCCCAAA ATTCACCACTACATATTCCTATCAATAGCGCTCATGCAAGTCACCATGATAGGACTGTTT GGGCTCAAGTCGAAGCCAGGAGCCTCCTTGGCCACAGTTCCCTTGCTTGTGCTCAACATC CTTTTCAACGAGTACTGCAAGGCCCGGTTTCTTCCAACTTTCAGGCATCGACCAGTCCAG GCTGCCAATGAGCTTGATGAGGCTGAGGGTACGACTGAAGGCGACGTTGACGATGCAATC TGCGCTTATAGGCCACCATGGATGCGTCCGACGAACCTGGAATCTAGTTCTGTGGAGCCT TTGAATGTTTGA

Peptide Sequence

PEP ID	Zm00001d011872_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:8:163438580:163443056:-1 gene:Zm00001d011872 transcript:Zm00001d011872_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:CSC1-like protein
Sequence	MDAEGLLASAAINLGLALVALSLFSLLKKQPGNAPVYRPRRMATGDLRADGGFLPLGHGR LTPSFRWIGAAFRLSEDDVLRRHGLDALVIVRLFKFGINCFSVCSIVGLLVLAPTNYTSE GRAEIRRSNSMELFTVTNVTRGSNRLWVHYSCLCFISLYVVYLLHKEYREITMRRIEHLK HHYKRYDQYTVLVRGIPTCPDHGAYGCYVDHFFSKHYRTYRSYQIVHDIGNIEALQKLAS SIEKRIQRKRETSKCSLLGRIWSKFTSDATGIHNHEEKLKNVQDTIRLLQCENMLKQKEV PVAFVSFKSRLEAAQAAETQQLANPLSLVTTYAPEPTDTIWKNLSIPFWRMATYRLGVFA AAVLLTVFFTIPVTAVQGIAQFEKMKRWFPPARAVQLIPGLNSVVTGYLPGMILNGFIYL VPSAMLGMASFEGCVASSQREIRACDMVFYFLLGNVFFLSVLSGSLLDQIGESFTHPKNI PNRLASAVSAQSDFFITYILTNGMSGFSLEVLQFGLLIWQFLKARSIGHSEEPYLYGFPY FRVVPVVSIAILIGVVYAVVAPLLLPILLVYFLLGYAVYINQMEDVYEITYDTCGQYWPK IHHYIFLSIALMQVTMIGLFGLKSKPGASLATVPLLVLNILFNEYCKARFLPTFRHRPVQ AANELDEAEGTTEGDVDDAICAYRPPWMRPTNLESSSVEPLNV

Transcript Sequence

Transcript ID	Zm00001d011872_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:163438580:163443056:-1 gene:Zm00001d011872 gene_biotype:protein_coding transcript_biotype:protein_coding description:CSC1-like protein
Sequence	CGGGAAGCTGATCGTTCACTGCTACTAGCGCAGTGCCCACGCTGGTGCAGCACCGGATCA TCTGTGTGACAAGGAAGAAGAATGGACGCGGAGGGGTTGCTGGCGTCGGCGGCGATCAAT CTGGGACTGGCGCTGGTGGCGCTCTCGCTCTTCTCCCTGCTCAAGAAGCAGCCGGGGAAC GCGCCCGTTTACCGTCCCCGCCGGATGGCGACCGGCGACCTTCGTGCTGATGGTGGCTTT CTACCGCTCGGCCACGGGCGACTAACCCCGTCGTTCCGGTGGATAGGCGCGGCCTTCCGG CTCTCTGAAGACGACGTGCTGCGGCGCCACGGCCTCGACGCTCTCGTCATCGTCCGCCTC TTCAAGTTTGGGATCAATTGTTTCAGTGTTTGCTCGATTGTTGGACTACTGGTCCTTGCT CCAACAAATTATACTAGTGAAGGTCGCGCTGAAATCAGAAGATCGAATTCCATGGAACTG TTCACGGTTACCAATGTGACACGGGGATCTAATAGGCTTTGGGTGCATTATTCATGCCTT TGCTTTATATCCTTGTATGTGGTATATTTGCTTCATAAGGAATACAGAGAAATTACTATG AGAAGAATTGAGCACTTGAAGCATCACTACAAAAGATATGATCAATACACCGTTTTGGTG CGAGGAATTCCAACATGTCCAGACCATGGGGCTTACGGGTGTTATGTGGATCACTTCTTC TCAAAGCATTATCGGACATACCGATCATACCAAATCGTACATGACATAGGAAACATTGAG GCATTGCAGAAGCTGGCGTCCTCCATTGAGAAACGGATACAGAGGAAAAGGGAGACCAGT AAATGTAGTCTCTTGGGACGGATCTGGAGCAAGTTTACATCGGATGCAACAGGCATTCAC AACCATGAAGAGAAACTGAAAAATGTGCAAGATACTATCCGCCTCCTACAGTGTGAAAAT ATGCTTAAACAAAAGGAGGTACCTGTAGCCTTTGTGTCGTTCAAATCCCGGTTGGAGGCT GCCCAAGCTGCGGAGACGCAGCAGCTCGCCAATCCACTGTCGCTGGTCACAACCTACGCG CCCGAACCAACGGACACGATATGGAAGAACCTGTCCATCCCGTTCTGGCGCATGGCTACG TACAGGCTCGGAGTCTTCGCTGCCGCGGTCTTGCTGACGGTGTTCTTCACCATCCCCGTA ACGGCCGTGCAGGGGATAGCGCAGTTCGAGAAGATGAAGAGGTGGTTCCCGCCGGCGCGA GCTGTGCAGCTCATACCTGGCTTGAACTCCGTGGTGACCGGGTACCTTCCGGGCATGATC CTGAACGGCTTCATCTACCTGGTTCCTTCCGCGATGCTCGGCATGGCCTCGTTCGAAGGC TGCGTCGCCAGCAGCCAGAGGGAGATCAGGGCCTGCGACATGGTCTTCTACTTCTTGCTC GGAAACGTGTTCTTCCTCAGCGTTCTCTCGGGCTCTCTGCTCGACCAGATCGGAGAGTCC TTCACGCACCCCAAGAACATCCCCAACCGTCTCGCGAGCGCTGTTTCTGCGCAGTCGGAT TTCTTCATCACGTACATCTTGACCAACGGCATGTCAGGGTTCTCCTTGGAGGTCCTTCAG TTCGGTCTGTTGATATGGCAGTTTTTAAAGGCGCGTTCAATTGGACACAGCGAGGAACCA TATCTGTATGGCTTCCCTTACTTCCGAGTCGTGCCCGTGGTTTCCATCGCAATATTGATC GGAGTGGTGTACGCTGTGGTTGCGCCCCTTCTGCTCCCGATCCTTCTGGTGTACTTCCTG CTCGGTTACGCAGTGTACATCAACCAGATGGAAGATGTTTATGAGATCACATACGACACA TGCGGGCAGTACTGGCCCAAAATTCACCACTACATATTCCTATCAATAGCGCTCATGCAA GTCACCATGATAGGACTGTTTGGGCTCAAGTCGAAGCCAGGAGCCTCCTTGGCCACAGTT CCCTTGCTTGTGCTCAACATCCTTTTCAACGAGTACTGCAAGGCCCGGTTTCTTCCAACT TTCAGGCATCGACCAGTCCAGGCTGCCAATGAGCTTGATGAGGCTGAGGGTACGACTGAA GGCGACGTTGACGATGCAATCTGCGCTTATAGGCCACCATGGATGCGTCCGACGAACCTG GAATCTAGTTCTGTGGAGCCTTTGAATGTTTGATCTGTCTTTTCCACGGTGGCACCATGG ACCTCCAGGCATCGCGGTTTCGTCTGTCAACTTGTAAAACACACCGCATATCACGGTAAC ACGCACAAGTTCAGTTCATGGAAGGAAATTCTCGAAACTGCGCTGTGTTCCTTGAATTTG CGGGACATGCTGATATTGCCCGAGATAGATTTACATGTTACGGATGTTAGAAATATAAGC ATTT