Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011819_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:8:162062147:162065473:1 gene:Zm00001d011819 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chlorophyllide a oxygenase chloroplastic
Sequence

ATGAACACGGTGGCTTTGTTGTCCTTGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACC
TGTTTCTCCAGAAAGGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGA
GACGACGGAGCTGAGTTTGCCAAGAACAACAACCTGGAGGCCCTGTTCCATGTGGATGAC
CCCGGGCCGAGGGTCCCCATCAAGAAGGGCAAGTTCCTGGACGTGAACGAGGCTCTCGAG
GTGGTCCGTTTTGACATCCAGTACTGCGACTGGAGGGCGCGGCATGATCTTCTCACCATC
ATGGTTCTCCACAACAAGGTGGTAGAGGTCCTCAACCCCCTAGCGAGGGAGTTCAAGTCG
ATCGGGACCTTGAGGAAAGAGCTTGCCGAGCTACAGCAGGAGCTGGCAAAAGCTCACAAT
CAGGTTCATCTCTCGGAAACCAGAGTCTCATCTGCGCTCGACAAGCTAGCGCATATGGAG
ACCCTGGTGAACGACAGGCTGTTGCCACCGGACGGAGCCTCTAGTACGTCCACGGCGCAG
CCCACTTCCTTGGTTCCAAGCACTTCGTCCACCGCCCGTGTCCGAGCCAAGAAACCGCCA
CGTCGGGGCCTTAACGTGTCTGGCCCGGTGAAGCCGTACAATCCCAGCCTGAAGAACTTC
TGGTACCCAGTCGCCTTCTCCAGTGATCTGAAAGATGACACCATGGTGCCGATAGCTTGC
TTCGAGGAGCAGTGGGTGATATTCCGTGGAAAAGACGGAAGGCCTGGGTGTGTTCAGAAC
ACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAG
TGCCCTTACCATGGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACA
AAGATGCTCAACGTGCGCATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAATGGTCTGG
ATTTGGCCTGGGGATGACCCACCAAAGGCTACAATCCCTTCTCTTCTGCCTCCTTCAGGA
TTTACAGTACACGCAGAGATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGAT
AACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCCAAGGGCTGG
AGTGTTCCAAGTTTGGTGAAGTTCTTAACACCTGCGTCTGGGCTCCAAGGGTACTGGGAT
CCTTACCCGATCGACATGGAGTTCCGACCGCCATGTATGGTCTTGTCGACCATTGGCATC
TCAAAGCCTGGGAAGCTAGAAGGGAAGAGCACCCAGCAATGCTCCACGCACCTCCACCAG
CTCCACGTCTGCTTGCCCTCCTCTAGGAACAAAACTAGGCTGCTGTACCGGATGTCGCTA
GACTTCGCTCCGTGGCTCAAGCATGTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAG
CAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATCATATGACAAGCTC
GGGGTCCGGTACCGGTTGTGGAGAGACACCGTTGAGAGGGGCTCTGAACGGTTGCCATTC
AGTAACCAAGCTGAGAGTGGATCATAG

Peptide Sequence

PEP ID

Zm00001d011819_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:8:162062147:162065473:1 gene:Zm00001d011819 transcript:Zm00001d011819_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chlorophyllide a oxygenase chloroplastic
Sequence

MNTVALLSLAPQLLIKPSLTCFSRKGVGRYGGIKVYAVLRDDGAEFAKNNNLEALFHVDD
PGPRVPIKKGKFLDVNEALEVVRFDIQYCDWRARHDLLTIMVLHNKVVEVLNPLAREFKS
IGTLRKELAELQQELAKAHNQVHLSETRVSSALDKLAHMETLVNDRLLPPDGASSTSTAQ
PTSLVPSTSSTARVRAKKPPRRGLNVSGPVKPYNPSLKNFWYPVAFSSDLKDDTMVPIAC
FEEQWVIFRGKDGRPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST
KMLNVRIQSLPCFEQEGMVWIWPGDDPPKATIPSLLPPSGFTVHAEIVMELPVEHGLLLD
NLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGI
SKPGKLEGKSTQQCSTHLHQLHVCLPSSRNKTRLLYRMSLDFAPWLKHVLNEDLRLVLGQ
QERMINGANVWNWPVSYDKLGVRYRLWRDTVERGSERLPFSNQAESGS

Transcript Sequence

Transcript ID

Zm00001d011819_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:162062147:162065473:1 gene:Zm00001d011819 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chlorophyllide a oxygenase chloroplastic
Sequence

GGAAAAGAAACTAGACGCAACCAGTTTCTCTTTCCCTCCCGATTTTCTGTTTTTCTTCTC
TTGGATTGGGCTCACCCTGCTCAAAACTTCGGCGGCAGCGGCAGCGGTAGCGGTGGCGGC
GCCGGCTTTCTCCATGAACACGGTGGCTTTGTTGTCCTTGGCGCCGCAGCTGCTCATTAA
GCCCTCCCTCACCTGTTTCTCCAGAAAGGGCGTTGGCCGCTATGGCGGAATCAAGGTGTA
CGCCGTGCTCAGAGACGACGGAGCTGAGTTTGCCAAGAACAACAACCTGGAGGCCCTGTT
CCATGTGGATGACCCCGGGCCGAGGGTCCCCATCAAGAAGGGCAAGTTCCTGGACGTGAA
CGAGGCTCTCGAGGTGGTCCGTTTTGACATCCAGTACTGCGACTGGAGGGCGCGGCATGA
TCTTCTCACCATCATGGTTCTCCACAACAAGGTGGTAGAGGTCCTCAACCCCCTAGCGAG
GGAGTTCAAGTCGATCGGGACCTTGAGGAAAGAGCTTGCCGAGCTACAGCAGGAGCTGGC
AAAAGCTCACAATCAGGTTCATCTCTCGGAAACCAGAGTCTCATCTGCGCTCGACAAGCT
AGCGCATATGGAGACCCTGGTGAACGACAGGCTGTTGCCACCGGACGGAGCCTCTAGTAC
GTCCACGGCGCAGCCCACTTCCTTGGTTCCAAGCACTTCGTCCACCGCCCGTGTCCGAGC
CAAGAAACCGCCACGTCGGGGCCTTAACGTGTCTGGCCCGGTGAAGCCGTACAATCCCAG
CCTGAAGAACTTCTGGTACCCAGTCGCCTTCTCCAGTGATCTGAAAGATGACACCATGGT
GCCGATAGCTTGCTTCGAGGAGCAGTGGGTGATATTCCGTGGAAAAGACGGAAGGCCTGG
GTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGA
GGGTAGGATCCAGTGCCCTTACCATGGTTGGGAGTACTCTACTGATGGGAAATGTGAAAA
AATGCCATCAACAAAGATGCTCAACGTGCGCATCCAGTCATTGCCATGCTTTGAGCAGGA
AGGAATGGTCTGGATTTGGCCTGGGGATGACCCACCAAAGGCTACAATCCCTTCTCTTCT
GCCTCCTTCAGGATTTACAGTACACGCAGAGATAGTGATGGAACTGCCAGTTGAACATGG
ACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTT
TGCCAAGGGCTGGAGTGTTCCAAGTTTGGTGAAGTTCTTAACACCTGCGTCTGGGCTCCA
AGGGTACTGGGATCCTTACCCGATCGACATGGAGTTCCGACCGCCATGTATGGTCTTGTC
GACCATTGGCATCTCAAAGCCTGGGAAGCTAGAAGGGAAGAGCACCCAGCAATGCTCCAC
GCACCTCCACCAGCTCCACGTCTGCTTGCCCTCCTCTAGGAACAAAACTAGGCTGCTGTA
CCGGATGTCGCTAGACTTCGCTCCGTGGCTCAAGCATGTCTTGAACGAGGACCTACGGCT
TGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATC
ATATGACAAGCTCGGGGTCCGGTACCGGTTGTGGAGAGACACCGTTGAGAGGGGCTCTGA
ACGGTTGCCATTCAGTAACCAAGCTGAGAGTGGATCATAGCCGGCCGGTGGGTCTCTTAA
TTTCCTCCTCGTCACATTTATTCGCGAGACGACGGCCAGAATTAGTTACCTAGGCGTGCG
TCTCTGTGCTCTGCTCCCTGATGCTGCTGCGTCTATCTGGAAGGCGAAGGTTGATGGGTA
ACATCATCGTGTCTCTCTCTCCCCTCTGGTGTTGGAATGTACACTAGCGTCGTTATCATG
AGATGCAATTGTAATCTGAGGTTGATATTTTCTTTCTTTCTTTCTTTTTCCTTTTCGCTT
TCTTCTTTTCTTCACCCTTTTTGTGTAAAGATTCAGCGAATGTTACTTTGTCAAAGCATG
TATAATCAATCATACTACTAACTATGGAGACATGTTCATATGAG