Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d011788_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:8:161618982:161621182:1 gene:Zm00001d011788 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGAATAAAAAAAACTCGTTTATTCCCCAACCATCCTCTCTTCCTCGCCGCAAAGCCCCT AAACCTCCACCTCCAACGGCGGCGCTTCCCCCTCTCCGCCGTCTCCTGGCCCTCCGCGGC CACCGACGCCTCCTCTCCACACCCGCCGCCTCATCCAACAACCGCCTTTCCCCAGAGGCC GTGCTCTACAACATCCACAGCCTCTCCAAGGACCCCTCCCAAGCGCTCGCCGTCTTCCGC CGCTCCGTCGCCGCCGGCCAGCCAGTTGGCTCCGCGGCATACAACCTCATGCTCCGCACC CTCGCCTCCCACCCCTCTGCGCAGCGCCATTTCTGGCCCTTCCTCCGCGAGATGCAGGAG GCTGGCCACTCCGTCGACCAGGGCACCTACCTCGCTGCTCTCGCCTCCTTCAAGAAGGCC AGTCTCACCGCCGACTATGCCTCCCTCACCGCGCATTACGACAAGTTCCGGAAAGGTGCC AAGTCCGCCACCGCGGCGGCGGAGGCGGTCCGGGACCACGACGCCGCGGGCCTCGATAGC AGGCTCTCCGCCATCGGTCTCCTTCCGCTTACGGAGACCTCCGTCACCACGGTGCTCCGA GAGCTGAGGGAGCATCCGATTAAGGCTCTCGCCTTCTTCAGATGGGCTGGGCGGCAGCAG GGGTACACGCACAGCTCCGTGGCCTACAATGCCATGGCAAGGGTGCTCGGCAGGGAGGAG TCAGTGCCGGAGTTTTGGGACTTGATCCGGGAAACAAAGGCTGCTGGGATGCACGTCGAT ATCGACACTTACCTCAAGCTGTCCAGGAACTTCCAGAGGCGCCACATGGTCCGGGAGGCT GTGGAGCTATATGAGCTCATGATGGATGGCCCTTTCAAGCCAGCACAGCAGGATGGACCC ATCATCATCAGGCGCATCTCGATGGGGCCGTCGCCAGATCTTGAGCTTGTCAATCGGGTT GTCAACAAGTTTGAGGCTGTCTGGGGCGTCAAGACCAAGGAGTTGCTTGATGGGGTCCAT AGGGCGCTTACACGTAATGGGATGTTCGATGAGGCTGCAGAGATTGTGCAAACAATGAAG GCCCAAGGCCACCAGCCGGACAATGTTACATATAGCCAGTTGGTGTATGGTCTTTGCAAG GCTGACAAGCTGGAGGATGCTCGCAAGGTGCTCGATGAAATGGAGGCTGAAGGGTGTGTC CCAGATTTGAAGACTTGGACCCTGTTGATCCATGGTTGCTGTTTAGCTGGGGATGTGGAT AGAGCTGTGCAATACTTAACCGAGATGATCGAAAAGGGCTTGGACGCAGATGCCAATTTG CTGGATGTGATATTGAAAGGTCTATGTAGCCATGAAAAGGTCGAAGAGGCTTACTCTTTC TTTATTGAGATGGTGGATAAGACTGAGTTGAGGCCTTGGCAAGGCACTTGCCAGCATCTA ATTAATGACTTGCTGAGGGTAAACAAACTTGAGGAGGCACTGTCTCTTCTGAAGACAATG AAAACCTGCAAGTTCCCACCTTTCGCCGATCCATTCCCTCCTTACATTGCCAAGTATGGA ACGGTTGAAGATGCAAGGAACTTTTTCAAGGCCATGACAGTGAATACTTCTCCAGAACCT GTTGCCTACCTGCATGTTCTCAAGTTGTTCTTTGCGGAGGGAAGATATTCTGAAGCTCAA GATCTACTGTATGGATGCCCTAATCACATCCGCAAGCACCCCGATGTCATTAAACTGTTT GGATCAATAAAAGTTGAGAGTGCCTCTGCTTCTAGATTGGGTTCAAGCAAGCAATAG

Peptide Sequence

PEP ID	Zm00001d011788_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:8:161618982:161621182:1 gene:Zm00001d011788 transcript:Zm00001d011788_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	MNKKNSFIPQPSSLPRRKAPKPPPPTAALPPLRRLLALRGHRRLLSTPAASSNNRLSPEA VLYNIHSLSKDPSQALAVFRRSVAAGQPVGSAAYNLMLRTLASHPSAQRHFWPFLREMQE AGHSVDQGTYLAALASFKKASLTADYASLTAHYDKFRKGAKSATAAAEAVRDHDAAGLDS RLSAIGLLPLTETSVTTVLRELREHPIKALAFFRWAGRQQGYTHSSVAYNAMARVLGREE SVPEFWDLIRETKAAGMHVDIDTYLKLSRNFQRRHMVREAVELYELMMDGPFKPAQQDGP IIIRRISMGPSPDLELVNRVVNKFEAVWGVKTKELLDGVHRALTRNGMFDEAAEIVQTMK AQGHQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGCVPDLKTWTLLIHGCCLAGDVD RAVQYLTEMIEKGLDADANLLDVILKGLCSHEKVEEAYSFFIEMVDKTELRPWQGTCQHL INDLLRVNKLEEALSLLKTMKTCKFPPFADPFPPYIAKYGTVEDARNFFKAMTVNTSPEP VAYLHVLKLFFAEGRYSEAQDLLYGCPNHIRKHPDVIKLFGSIKVESASASRLGSSKQ

Transcript Sequence

Transcript ID	Zm00001d011788_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:161618982:161621182:1 gene:Zm00001d011788 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGAATAAAAAAAACTCGTTTATTCCCCAACCATCCTCTCTTCCTCGCCGCAAAGCCCCT AAACCTCCACCTCCAACGGCGGCGCTTCCCCCTCTCCGCCGTCTCCTGGCCCTCCGCGGC CACCGACGCCTCCTCTCCACACCCGCCGCCTCATCCAACAACCGCCTTTCCCCAGAGGCC GTGCTCTACAACATCCACAGCCTCTCCAAGGACCCCTCCCAAGCGCTCGCCGTCTTCCGC CGCTCCGTCGCCGCCGGCCAGCCAGTTGGCTCCGCGGCATACAACCTCATGCTCCGCACC CTCGCCTCCCACCCCTCTGCGCAGCGCCATTTCTGGCCCTTCCTCCGCGAGATGCAGGAG GCTGGCCACTCCGTCGACCAGGGCACCTACCTCGCTGCTCTCGCCTCCTTCAAGAAGGCC AGTCTCACCGCCGACTATGCCTCCCTCACCGCGCATTACGACAAGTTCCGGAAAGGTGCC AAGTCCGCCACCGCGGCGGCGGAGGCGGTCCGGGACCACGACGCCGCGGGCCTCGATAGC AGGCTCTCCGCCATCGGTCTCCTTCCGCTTACGGAGACCTCCGTCACCACGGTGCTCCGA GAGCTGAGGGAGCATCCGATTAAGGCTCTCGCCTTCTTCAGATGGGCTGGGCGGCAGCAG GGGTACACGCACAGCTCCGTGGCCTACAATGCCATGGCAAGGGTGCTCGGCAGGGAGGAG TCAGTGCCGGAGTTTTGGGACTTGATCCGGGAAACAAAGGCTGCTGGGATGCACGTCGAT ATCGACACTTACCTCAAGCTGTCCAGGAACTTCCAGAGGCGCCACATGGTCCGGGAGGCT GTGGAGCTATATGAGCTCATGATGGATGGCCCTTTCAAGCCAGCACAGCAGGATGGACCC ATCATCATCAGGCGCATCTCGATGGGGCCGTCGCCAGATCTTGAGCTTGTCAATCGGGTT GTCAACAAGTTTGAGGCTGTCTGGGGCGTCAAGACCAAGGAGTTGCTTGATGGGGTCCAT AGGGCGCTTACACGTAATGGGATGTTCGATGAGGCTGCAGAGATTGTGCAAACAATGAAG GCCCAAGGCCACCAGCCGGACAATGTTACATATAGCCAGTTGGTGTATGGTCTTTGCAAG GCTGACAAGCTGGAGGATGCTCGCAAGGTGCTCGATGAAATGGAGGCTGAAGGGTGTGTC CCAGATTTGAAGACTTGGACCCTGTTGATCCATGGTTGCTGTTTAGCTGGGGATGTGGAT AGAGCTGTGCAATACTTAACCGAGATGATCGAAAAGGGCTTGGACGCAGATGCCAATTTG CTGGATGTGATATTGAAAGGTCTATGTAGCCATGAAAAGGTCGAAGAGGCTTACTCTTTC TTTATTGAGATGGTGGATAAGACTGAGTTGAGGCCTTGGCAAGGCACTTGCCAGCATCTA ATTAATGACTTGCTGAGGGTAAACAAACTTGAGGAGGCACTGTCTCTTCTGAAGACAATG AAAACCTGCAAGTTCCCACCTTTCGCCGATCCATTCCCTCCTTACATTGCCAAGTATGGA ACGGTTGAAGATGCAAGGAACTTTTTCAAGGCCATGACAGTGAATACTTCTCCAGAACCT GTTGCCTACCTGCATGTTCTCAAGTTGTTCTTTGCGGAGGGAAGATATTCTGAAGCTCAA GATCTACTGTATGGATGCCCTAATCACATCCGCAAGCACCCCGATGTCATTAAACTGTTT GGATCAATAAAAGTTGAGAGTGCCTCTGCTTCTAGATTGGGTTCAAGCAAGCAATAGTTG GTGAGATTATGATGAACCCTTAGGTTTGCATGCTAGCTAGCTTTATGTTTTTAAGTAGCC TTGGTATTGGGTACTTTTAACAAATGATCCATCTTTTAATGATATATGGTTCAACTAAGT CGAATTTCAGTATATGCCACTCCCAGCCCATAATCTGCTGGCATATTCCCCTATAACTTA GCTTCAGAGGAAGGTGCCAACTGGCACGTCCTTGAAACTGTTGTTTTTCGTCATTGTTCC TACTTGCTAGTATCGTTGCAACTATGCTGATGGATTTTCCTTCAAAATGCATCAAAGCAT TTGCTAAGAGTTTGAACACCATGTTTGTTATACTGGCGATTATCAATGTCAGGAGCTCTG AAATGCAAGTGCTTTGACAAATAAGATTATATGATCGCATC