Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d011720_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:8:159836670:159840842:1 gene:Zm00001d011720 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:violaxanthin de-epoxidase3 description: violaxanthin de-epoxidase3
Sequence	ATGCTTGTCTTCACGGATAATTTGGTTGGTCATGATAACCTCAGGAAAGAGTTACTATCA CACTGTGATATGCTAGTCAATGTTGCAATAACAAATCAGGATGCTGTTCAGTGGCTTATA AACAACAGCAAACACATTTCTAATGTAATTTGCTTTCAGTCATCTCCGTCTTTAGTAAAC AAACTAGGTGGCACATATGTTCAGTACACTGGAGAGCAGGACATGTTTGGGAAGCTAACA AGTATTGGAAAACCAAGTGGCATAGAGGAATCAACTGAAGTTATGAAGACCATATCTAAT GCTTGGGAAAGACACAATTCAGATGACATTAGATTTTGCTTGCTTGTTGTTGTAAATGCA TACATAAGACCGGTTGCTATGCTGAAAAATCTAAGGGCAAAAGGCCTTTCTACCCTAACT TGCATGATAAAGAACTGTGGTCCTCAGATACTCAATTGTCTGTTTGACCCTAACTGTAGG AAGGCCCTTCAGTGTTTGAATTCCTGTTCTCCAACTGATCAAGTCTGCAACTATCGTTGC ATTGCATCATATGAAAGTCCATATCTGGAGGCTTTTTCCCTCTGTGTTTTGCAGAAGAAC AATTGCCTTGACCTCAATGCTGAGATACCCAGTAAACCGAATGTAATGCCACTAACCATG TTCAGAGAACAAAAACTAAGCCATGAAATAGCGGAAGATCTTTTTGTTGGTTGGTTGGAC AGCATGGAATGGAGTTGGCGAGTGGCAGCTGGACAAAATCCAGCATATGATCAATTCCCA TGTCAGTACCAGTTATTTTACAGAGGGAAAGCTAAAGGTTCATTTTGGTATGAGCCGGTT TTTCAGGTCAAAACCCTGGAAGGGGAGCTGGTTTGGAGGCGCAGGAGGTATCGTGTGAGA AGGGCTAGCACTCCTGGTACATTTTACTTCAGTGTGTTGGATAATGGTGTCATTTCCAAA GAATATTGGACAATTGTTGACGTTGCGGAGGATTTCAGCTGGGGTCTGTTCCATTATCAT GGCGCAGCACAAGCTGCTGGGCTATCATACACTGGAGCAGTGCTTGTTACTCCAGATGGG TCTTATCCTGACCTGGAAGACCCAAGATTGGCCTCTGCTTTAGAGAACTGTGCTATAAAG AAATGGGAGCTCTATACAGTCGATAACTGCTCCTGCATGGGTGCACCACTGGGAACTCCT GAGGGTTCAAAGCTGCACCATCAAATTTCTCCAGGAAAAGAAAGTAGTGTTTTGCAGAGA AGATGA

Peptide Sequence

PEP ID	Zm00001d011720_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:8:159836670:159840842:1 gene:Zm00001d011720 transcript:Zm00001d011720_T004 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:violaxanthin de-epoxidase3 description: violaxanthin de-epoxidase3
Sequence	MLVFTDNLVGHDNLRKELLSHCDMLVNVAITNQDAVQWLINNSKHISNVICFQSSPSLVN KLGGTYVQYTGEQDMFGKLTSIGKPSGIEESTEVMKTISNAWERHNSDDIRFCLLVVVNA YIRPVAMLKNLRAKGLSTLTCMIKNCGPQILNCLFDPNCRKALQCLNSCSPTDQVCNYRC IASYESPYLEAFSLCVLQKNNCLDLNAEIPSKPNVMPLTMFREQKLSHEIAEDLFVGWLD SMEWSWRVAAGQNPAYDQFPCQYQLFYRGKAKGSFWYEPVFQVKTLEGELVWRRRRYRVR RASTPGTFYFSVLDNGVISKEYWTIVDVAEDFSWGLFHYHGAAQAAGLSYTGAVLVTPDG SYPDLEDPRLASALENCAIKKWELYTVDNCSCMGAPLGTPEGSKLHHQISPGKESSVLQR R

Transcript Sequence

Transcript ID	Zm00001d011720_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:159836670:159840842:1 gene:Zm00001d011720 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:violaxanthin de-epoxidase3 description: violaxanthin de-epoxidase3
Sequence	GGCTGATAGGCTGAAGTGGGTCGATGAAGGATTTGAAATGCTTGTCTTCACGGATAATTT GGTTGGTCATGATAACCTCAGGAAAGAGTTACTATCACACTGTGATATGCTAGTCAATGT TGCAATAACAAATCAGGATGCTGTTCAGTGGCTTATAAACAACAGCAAACACATTTCTAA TGTAATTTGCTTTCAGTCATCTCCGTCTTTAGTAAACAAACTAGGTGGCACATATGTTCA GTACACTGGAGAGCAGGACATGTTTGGGAAGCTAACAAGTATTGGAAAACCAAGTGGCAT AGAGGAATCAACTGAAGTTATGAAGACCATATCTAATGCTTGGGAAAGACACAATTCAGA TGACATTAGATTTTGCTTGCTTGTTGTTGTAAATGCATACATAAGACCGGTTGCTATGCT GAAAAATCTAAGGGCAAAAGGCCTTTCTACCCTAACTTGCATGATAAAGAACTGTGGTCC TCAGATACTCAATTGTCTGTTTGACCCTAACTGTAGGAAGGCCCTTCAGTGTTTGAATTC CTGTTCTCCAACTGATCAAGTCTGCAACTATCGTTGCATTGCATCATATGAAAGTCCATA TCTGGAGGCTTTTTCCCTCTGTGTTTTGCAGAAGAACAATTGCCTTGACCTCAATGCTGA GATACCCAGTAAACCGAATGTAATGCCACTAACCATGTTCAGAGAACAAAAACTAAGCCA TGAAATAGCGGAAGATCTTTTTGTTGGTTGGTTGGACAGCATGGAATGGAGTTGGCGAGT GGCAGCTGGACAAAATCCAGCATATGATCAATTCCCATGTCAGTACCAGTTATTTTACAG AGGGAAAGCTAAAGGTTCATTTTGGTATGAGCCGGTTTTTCAGGTCAAAACCCTGGAAGG GGAGCTGGTTTGGAGGCGCAGGAGGTATCGTGTGAGAAGGGCTAGCACTCCTGGTACATT TTACTTCAGTGTGTTGGATAATGGTGTCATTTCCAAAGAATATTGGACAATTGTTGACGT TGCGGAGGATTTCAGCTGGGGTCTGTTCCATTATCATGGCGCAGCACAAGCTGCTGGGCT ATCATACACTGGAGCAGTGCTTGTTACTCCAGATGGGTCTTATCCTGACCTGGAAGACCC AAGATTGGCCTCTGCTTTAGAGAACTGTGCTATAAAGAAATGGGAGCTCTATACAGTCGA TAACTGCTCCTGCATGGGTGCACCACTGGGAACTCCTGAGGGTTCAAAGCTGCACCATCA AATTTCTCCAGGAAAAGAAAGTAGTGTTTTGCAGAGAAGATGATAATCTGTAATATGTTA AAGTGACTCCCAAATGATTATGTCGTACGTACAAAGATGTACAGCCAAGTGGACATGTAT TGCTGAAGAGAGCTCATATGTAACCTGCAGGTATATTTTCTTCTTTTGAATATACGTGTA ACCTAATTCCTACCTTTTGTGGTTTTTTAGCATCTTCGGTGTTCCCATCGGTACCTGTCG AAGCATCTTGTAGTGTTCAGACAGTTCAGTTGGCTATCAGTGCGAAGGAGACACATTGGT CAAGCAGAACTGCAGAGGAGGTGTACCTGGGCAGACAAGTTAGAGTTAGCAACTGACCCA CTTCACTTTGATTTTACGTTATTGAGTTGCTCTGCGATGTACAGGTTTGGATCTCCTTAT GTTGACCCAAGTTCTATATCCTACAGGTTTGTTTTAAATTTGGTATACTTTCATAAATGC AATTCTCACTTTTCGAGAAGTAGGACAATTTAAAGTCTGACTAAAATTATTTTAAAAAGG TATTAATATTGAGGATACAGAATAAATATCATTATATTGATTATAAAATATATTTTGGTA GTAAACTTAGTTGAAGACATAAATGTTAATGTTCCTCTATAGTTTTAGTTAAATTGAATC TAGTTTGATTTGCACACATCCCGTAGTTTGGACGGAAGAGTAAGCTCTTGTTTTTCCCTG AATTGCTCTGAACAACCTGTTCCTGCTTTCCTGAATCCTGGTACCATGAGAAAAAACATC TCATGTTGTATATGGTTTCTGCTGCTGCACAAGATTCCCCATGACCCCATGTGATGTTGC AGTTTGAGTCAACATATGTGATTCGTCAGTGGATAATGCAAAGTTCTTTTTGAACGGGAT CATATGACTAGTTTGACTTGGCTATGACTCTGACCGCTTTTGTTTTGTGGCTATAAATTC CATCCAACATCAGACCCTGCAATCCGCACTTGACAGCTGATAGGCAGGCGATACCGTACC GAGAGAGTTGAAGCTGAGAAAGAATGGCGGGGCTCTACGAGAAGCAGTCGGAGACGTACG CCAAGAAGCGTCCGCAGTACCCCAAGGAGTGGTTCTCCATGCTGGCCAGCCTCACCGCGG GGCACCAGCGCGCCTGGGACGCCGGGTGTGGCACCGGCCAGGCCGCCTCAGATGGCGGAG CACTACGAGAGCGTGGTGGCGACGGACGTGAGCGAGGGGCAGCTCCGGCACGCCACCGCG CACCCGAAGGTGCGGTACCTCCACACCCCGGAGCACCTCTCGGAGGACGAGCTGGTGTCG CTGGTCGGCGGCGAGGGCTCCCTGGACCTGGTCGTGGTGGCCACCTCCATCCACTGGTTC GACGTCCCGCTCTTCTACGCCGTCGTGAGCCGCGCCCTGCGGAAGCCCGGCGGCATGCTC GCCGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACGCGCTGCACGGCCAGCTC TACCCGGCCCTGCGGCCGTACCTGGACCCGCGGGCGGGACTGGCCATGGAGCGGTACAGG TCCCTGCCGTTCCCGTTCGAGCCCGTCGGGGTGGGCGCCGAGGGCGCGCCCGCCGACGTG GACATCGAGGTGGAGATGACGCTGGAGGACCTGGTCGGGTTCCTGAACACCGGCTCTGTC GTGACCACGGCGAGGGCCAAGGGCGTGGACCTGGAGGCGGTCACGAGGGCCGCGCTGAAG CGTGTGGAGGAGCAGTGGGGCGGCGCGCCCACCGTGCCGAGGAAGCTCGTGTTCAAGGCG TTCATGCTCGCCGGGAGGCCCAAGTGCTGAAGTGATAATGCCGAATAAGTGTTTGCTTGT CAGTCAGCGTGAGATTGAGATGAGATCACAGACTACAATACATCATATAGCCAGCCACTG GATTATGTCTGGCGATCTAATGACATCTGAAGCCACTACATCCAACCCAGGTAGAGGTAG CAAACTGCGTATTCCTTTCATGCTGTATGCAGAATGAAGAAGAAATACCTATTTCCATTG CCTAGTGAATTCCCATTAGTATTTCTTCTTTCACTGGATTATGTTGTATGCAGAATGAAG AAGAAATACCTATTTTCATTGCCTAGTGAATTCCCATTAGTATTTCTTCTTTCACTGGAT TATGTTGTATGCAGAATGAAGAAGAAATACCTATTTTCATTGCCTAGTGAATTCCCATTA GTATTTCTTCTTTCACTGGATTATGTTGTATGCAGAATGAAGAAGAAATACCTATTTTCA TTGC