Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011660_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:8:157761159:157769182:1 gene:Zm00001d011660 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative regulator of chromosome condensation (RCC1) family protein

Sequence

ATGATAAGAACTAGTGGTGCAGATAGTACTCGACTTAGTATTTCCAGTGCCCCTAGCTCT
TCCAGTCAGGGTTCTGGAACAGATGACATAGAATCCCTTGGTGATGTCTATGTATGGGGT
GAAGTTTGGACTGATGCGGCCCCATCAGATGGACACACAAGCTCGTCTTGCTCAAAAGTA
GACGTTTTGATCCCGAAGCCTTTAGAATCAGATGTCGTCTTAGATGTTAATCAGATAGTA
TGTGGTTCAAGGCATGTTGCTCTTACTACCAGGCAAGGGGAGGTGTTTACATGGGGCGAG
GAACTTGGTGGGCGCCTTGGTCATGGAACTGATACAGATATTAGTCGTCCCAAGCTTGTT
GAGTCACTATCCGTGACCATAGTTGATTTTATTTCATGCGGAGAGTTCCATACCTGTGCT
ATATCTGCTTCTGGTGATCTGTTCAACTGGGGGGATGGCTCTTACCGTGCTGGATTGCTT
GGATACGACACTGGGGCTAGCCATTGGCTTCCAAAGCGTGTCTCAGGGCCCTTGGAGGGG
CTTCAGGTACTGTCTGTTGCATGTGGCTCGTGGCATTCAGCTCTGATCACATCAACTGGA
AGACTTTACACATTTGGTGACGGAAAATTCGGTGCTCTTGGGCATGGAAACCGTGAAAGC
GCTGCGTACCCAAAAGAAGTGGAAGCCTTGAATGGATTTAGAACTGTCAAAGTTGCATGC
GGAGTCTGGCATTCTGCAGCAATTGTGGAGGCCTCTGTTCAGACAGGCATGAATGTGGTG
TCTAAGAAGCTGTATACGTGGGGTGATGGAGATAAGAATCGTTTAGGCCAAGGGGACAAA
GAAGCTAGGCTGATTCCTACCTGTCTTCAAGCTCTTCTTGAGCACAATTTTCATCAGCTG
GGATGTGGACAGAACATGACTGTTGCCCTTGCTACATCCGGTCATGTGTATACCATGGGT
AGTTCTGACAATGGTCAGCTCGGAAATCCAAAATCTGATGGTAAACATCCTTGCCTTGTC
AAAGACAAACTAGCTAACGAGTTGGTTGAGGAGATCTCATGTGGAGCCGCCCATGTTGCA
GTTCTAACGTCAAGAAGCGAAGTATACACGTGGGGACTGGGTGCCAATGGAAGACTTGGT
CATGGTGACCTCAACGACAAGAAGACACCAACTATTGTCGAAGCACTTAAAGATCGGCAT
GTCAAAAGTATATCATGCGGCTCAAACTTCACAACATGTATCTGCATACATAGGTGGGTG
TCAGGTGCAGATCAGTCTGTTTGCACAGGTTGTAGGCAGGCATTTGGTTTCACGAGGAAG
AGACATAATTGCTACAACTGTGGGCTAGTACACTGCCATGCTTGCAGTTCAAGAAAAGTG
CTCAAGGCTGCTCTGGCACCAACTCCTGGCAAGCCGCATCGTGTATGTGATTCATGTTTC
CTGAAACTGAAGAATGCAGACACCAGCAGCAGCAATGCGAACAGAAGAAATGCCGCTACT
CGTCGCTCTACGGACAGCAGAGAAAAACCAGAAATAAGGCCTCCCAGGCTTGTGGCAACA
CCGTCAGCAGAGCCAGGCAAGTACATGGAGGTAAAAGCATCTAAGAGCGATATGAAACCT
GCAGATTCGATCATGAAGGCATCACAAGCTTCGGCTCTACTGCAGTTCAAAGATCTTGGT
TTTGGTGCCCAATTTGGTGGGCTTCAGCCTATGGGAATGCCACCGGCATTAGCTATGTCA
CCTGCGATACCGGCATTTTCTTTGGCACCTCCATCTCCATATACAAAGAAAATGAAATCA
CCTCCTACTTCTGCTATCCCCCAGAGCTCTAAAGTCGATGTTGATCACTTGCAGAAGTCA
AATGACTTGCTGAATCAGGAAGTTCTGAAATTGCAATCTCAGGTTGAGGATTTGAAACAA
AAGTGCGAAGCACAGCACGAGCAGCTTCAGAAATCAGATAAAAAAGCTAAGTCAGTTGCC
TCTATGGCCACTGAAGAATCCTCGAAACGTAATGCTGCCGTGGAGTTTGTTAAATTTCTT
GATAATGAGCTCAAGGGTATTGCAGATAAACTTCCTGTTGACGTTGCCGACAGCTTGAAA
GCTTTGCAAATGCGAACACAGTCACTACTGAGGGAACAATCAGGTCACCCCTTAGAGCTC
GTGAATCCAATGGAACGTGATCATCTTCACCTGTCCAGTGGTGGAAGTGGAAGATATGAT
TTGGTCACTCATAAGTCAGGAGGTGTAGGTTACCTGACAATGTCTCAAGATGGCAGTTCT
GCCAGTGGCTCAGCCATGTCCATCACGAGTGAATCCCCATCCCATCGTTTCATGGAAAAC
AGTTCAAAGGCCCATGGTGATTTTGCCCCGAAGCAGGGTACCCATGGAGAGGTCCAGTTA
ATTGAGCAGTTTGAACCTGGCGTATATGTGACACTTATCCAACTAAAGGACGGTACCAAA
GTATTCAAGCGGGTCCGATTCAGCAAGAGGAGATTCGCAGAGAATCAGGCTGAAGAATGG
TGGAGGGAAAACCAAGAGCGGGTCTTCAAGAAATACAGCCACCCAACTCATGCACCACAT
GGAAACACAACTTCTCACGAGGAAGAGCATCATTCATGA

Peptide Sequence

PEP ID

Zm00001d011660_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:8:157761159:157769182:1 gene:Zm00001d011660 transcript:Zm00001d011660_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative regulator of chromosome condensation (RCC1) family protein

Sequence

MIRTSGADSTRLSISSAPSSSSQGSGTDDIESLGDVYVWGEVWTDAAPSDGHTSSSCSKV
DVLIPKPLESDVVLDVNQIVCGSRHVALTTRQGEVFTWGEELGGRLGHGTDTDISRPKLV
ESLSVTIVDFISCGEFHTCAISASGDLFNWGDGSYRAGLLGYDTGASHWLPKRVSGPLEG
LQVLSVACGSWHSALITSTGRLYTFGDGKFGALGHGNRESAAYPKEVEALNGFRTVKVAC
GVWHSAAIVEASVQTGMNVVSKKLYTWGDGDKNRLGQGDKEARLIPTCLQALLEHNFHQL
GCGQNMTVALATSGHVYTMGSSDNGQLGNPKSDGKHPCLVKDKLANELVEEISCGAAHVA
VLTSRSEVYTWGLGANGRLGHGDLNDKKTPTIVEALKDRHVKSISCGSNFTTCICIHRWV
SGADQSVCTGCRQAFGFTRKRHNCYNCGLVHCHACSSRKVLKAALAPTPGKPHRVCDSCF
LKLKNADTSSSNANRRNAATRRSTDSREKPEIRPPRLVATPSAEPGKYMEVKASKSDMKP
ADSIMKASQASALLQFKDLGFGAQFGGLQPMGMPPALAMSPAIPAFSLAPPSPYTKKMKS
PPTSAIPQSSKVDVDHLQKSNDLLNQEVLKLQSQVEDLKQKCEAQHEQLQKSDKKAKSVA
SMATEESSKRNAAVEFVKFLDNELKGIADKLPVDVADSLKALQMRTQSLLREQSGHPLEL
VNPMERDHLHLSSGGSGRYDLVTHKSGGVGYLTMSQDGSSASGSAMSITSESPSHRFMEN
SSKAHGDFAPKQGTHGEVQLIEQFEPGVYVTLIQLKDGTKVFKRVRFSKRRFAENQAEEW
WRENQERVFKKYSHPTHAPHGNTTSHEEEHHS

Transcript Sequence

Transcript ID

Zm00001d011660_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:157761159:157769182:1 gene:Zm00001d011660 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative regulator of chromosome condensation (RCC1) family protein

Sequence

GTTGATTGTGAGATCAGATGAGGAATGTCCTGAGACGTTGGCGCATCATGTGTTGGTGAA
GGTTAGAGGAGAGGAAGATCTCTGAGTAAGAAGAAACACCACAATAGAAAAATCAGTTGT
CTCCACAAAACGCTCGGACTCGTATAGCCGGTCCTTCTCTCTGCGTTCTCCCTTGGGCTC
CCACGTCCGCCTAACAAGCCGCCATTCTCCCCTCCGTCTGGAGAGAAAGAGAGATTCACC
TCTCTTCCCAGGGCCGCCAGACGCAAGAAGAACTTCTAACGGAGGCCCTTATTACTCTAA
AGAAAGGTAGCAAGCTTATCAAGTATAGCCGGAAAGGAAAACCCAAGATCCGTTCTTTCA
GACTTTCTAGTGACGAAACAGCATTAATTTGGTATTCTCACAAAAAGGAAAAGTTCCTCA
GACTGTCCTCTGTCTCTAAAGTCATTCCTGGGCAGAGAACTGCTGTTTTTAGGAGGTTTC
TACGCCCTGAGAAGGACTATCTATCATTTTCACTCATATACAAGAACGGCCAACGTTCCC
TTGATCTGGTTTGCAAGGATCAAGTTGAAGTTGAAGTTTGGTTTTCAGCACTCGAGGCAT
TAATAAGTTCGTGCCATAGAAATTCTTCAGTTGATGAACACAAGGATAGAGTATCATTTT
CTGATGATGTATCATATTATCGAGATGGACATCCGTATGATTCAACACTAGATATTGCTT
CAAGTATATCACGTAGTTTTAACACAGCAGATTATTGCCGAGGCAGTTCTTTTAGTTTCA
GAAGATCAGATGCTGGATCTGATCGTGCAAATATGATAAGAACTAGTGGTGCAGATAGTA
CTCGACTTAGTATTTCCAGTGCCCCTAGCTCTTCCAGTCAGGGTTCTGGAACAGATGACA
TAGAATCCCTTGGTGATGTCTATGTATGGGGTGAAGTTTGGACTGATGCGGCCCCATCAG
ATGGACACACAAGCTCGTCTTGCTCAAAAGTAGACGTTTTGATCCCGAAGCCTTTAGAAT
CAGATGTCGTCTTAGATGTTAATCAGATAGTATGTGGTTCAAGGCATGTTGCTCTTACTA
CCAGGCAAGGGGAGGTGTTTACATGGGGCGAGGAACTTGGTGGGCGCCTTGGTCATGGAA
CTGATACAGATATTAGTCGTCCCAAGCTTGTTGAGTCACTATCCGTGACCATAGTTGATT
TTATTTCATGCGGAGAGTTCCATACCTGTGCTATATCTGCTTCTGGTGATCTGTTCAACT
GGGGGGATGGCTCTTACCGTGCTGGATTGCTTGGATACGACACTGGGGCTAGCCATTGGC
TTCCAAAGCGTGTCTCAGGGCCCTTGGAGGGGCTTCAGGTACTGTCTGTTGCATGTGGCT
CGTGGCATTCAGCTCTGATCACATCAACTGGAAGACTTTACACATTTGGTGACGGAAAAT
TCGGTGCTCTTGGGCATGGAAACCGTGAAAGCGCTGCGTACCCAAAAGAAGTGGAAGCCT
TGAATGGATTTAGAACTGTCAAAGTTGCATGCGGAGTCTGGCATTCTGCAGCAATTGTGG
AGGCCTCTGTTCAGACAGGCATGAATGTGGTGTCTAAGAAGCTGTATACGTGGGGTGATG
GAGATAAGAATCGTTTAGGCCAAGGGGACAAAGAAGCTAGGCTGATTCCTACCTGTCTTC
AAGCTCTTCTTGAGCACAATTTTCATCAGCTGGGATGTGGACAGAACATGACTGTTGCCC
TTGCTACATCCGGTCATGTGTATACCATGGGTAGTTCTGACAATGGTCAGCTCGGAAATC
CAAAATCTGATGGTAAACATCCTTGCCTTGTCAAAGACAAACTAGCTAACGAGTTGGTTG
AGGAGATCTCATGTGGAGCCGCCCATGTTGCAGTTCTAACGTCAAGAAGCGAAGTATACA
CGTGGGGACTGGGTGCCAATGGAAGACTTGGTCATGGTGACCTCAACGACAAGAAGACAC
CAACTATTGTCGAAGCACTTAAAGATCGGCATGTCAAAAGTATATCATGCGGCTCAAACT
TCACAACATGTATCTGCATACATAGGTGGGTGTCAGGTGCAGATCAGTCTGTTTGCACAG
GTTGTAGGCAGGCATTTGGTTTCACGAGGAAGAGACATAATTGCTACAACTGTGGGCTAG
TACACTGCCATGCTTGCAGTTCAAGAAAAGTGCTCAAGGCTGCTCTGGCACCAACTCCTG
GCAAGCCGCATCGTGTATGTGATTCATGTTTCCTGAAACTGAAGAATGCAGACACCAGCA
GCAGCAATGCGAACAGAAGAAATGCCGCTACTCGTCGCTCTACGGACAGCAGAGAAAAAC
CAGAAATAAGGCCTCCCAGGCTTGTGGCAACACCGTCAGCAGAGCCAGGCAAGTACATGG
AGGTAAAAGCATCTAAGAGCGATATGAAACCTGCAGATTCGATCATGAAGGCATCACAAG
CTTCGGCTCTACTGCAGTTCAAAGATCTTGGTTTTGGTGCCCAATTTGGTGGGCTTCAGC
CTATGGGAATGCCACCGGCATTAGCTATGTCACCTGCGATACCGGCATTTTCTTTGGCAC
CTCCATCTCCATATACAAAGAAAATGAAATCACCTCCTACTTCTGCTATCCCCCAGAGCT
CTAAAGTCGATGTTGATCACTTGCAGAAGTCAAATGACTTGCTGAATCAGGAAGTTCTGA
AATTGCAATCTCAGGTTGAGGATTTGAAACAAAAGTGCGAAGCACAGCACGAGCAGCTTC
AGAAATCAGATAAAAAAGCTAAGTCAGTTGCCTCTATGGCCACTGAAGAATCCTCGAAAC
GTAATGCTGCCGTGGAGTTTGTTAAATTTCTTGATAATGAGCTCAAGGGTATTGCAGATA
AACTTCCTGTTGACGTTGCCGACAGCTTGAAAGCTTTGCAAATGCGAACACAGTCACTAC
TGAGGGAACAATCAGGTCACCCCTTAGAGCTCGTGAATCCAATGGAACGTGATCATCTTC
ACCTGTCCAGTGGTGGAAGTGGAAGATATGATTTGGTCACTCATAAGTCAGGAGGTGTAG
GTTACCTGACAATGTCTCAAGATGGCAGTTCTGCCAGTGGCTCAGCCATGTCCATCACGA
GTGAATCCCCATCCCATCGTTTCATGGAAAACAGTTCAAAGGCCCATGGTGATTTTGCCC
CGAAGCAGGGTACCCATGGAGAGGTCCAGTTAATTGAGCAGTTTGAACCTGGCGTATATG
TGACACTTATCCAACTAAAGGACGGTACCAAAGTATTCAAGCGGGTCCGATTCAGCAAGA
GGAGATTCGCAGAGAATCAGGCTGAAGAATGGTGGAGGGAAAACCAAGAGCGGGTCTTCA
AGAAATACAGCCACCCAACTCATGCACCACATGGAAACACAACTTCTCACGAGGAAGAGC
ATCATTCATGATCTCCAAATCAGGTCCACACAGGTCGTCATGTAGGAGGTTTATCACGCG
AAATAGGGTAACACAGGACTTATTATTGTTTTGTTCATTATTTTCTTGTAAATTGTAGAT
TACTGTTGCCCTTTTTTTGTTCCTTTTACCCTGTTCAACCCCCTTCTGACAAAGGTATTC
ATTTCCAAAGCCAACTAAATTGAGGTTCACCTGGTTTGCTCTAGGTTATTGG