Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d011579_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:8:154890871:154895187:1 gene:Zm00001d011579 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGATTCATGATGCAAAAATTAAATTCTCTGATCATTCTATCCTAAGGATTGTTCAAATG TTGGGTCGATATGGAAATTGGAAATGTGTTTTGCAAGTGGTTGAATGGCTCCAGTCACAT GAAAGGTTCAAATCCTACAAGAGCAGGTATATTTACACAACAGTTCTCGATGTTCTAGGG AAGGCAAAGAGACCATTCGAGGCGTTGAATGTATTTTATACCATGCAGAACCAATTGTCA TCTTATCCTGACATGGCAGCTTATCATTGTATTGCTGTTACTCTTGGGCAAGCTGGTCTT ATAAAAGAATTATTTGATGTGATTGATTGCATGTGTTCTCCTCCTAGGAAGAAGTTCAAA TTGAGCCCTCTTCAGAATTGGGATCCTCGCTTGGAACCAGACCTTATTGTATACAATGCA GTTTTGAATGCTTGTGTGCAACAAAAGCAATGGGAAGGGGCATTTTGGGTACTGCAACAG TTGAAAGAGAAGAACATTTGTCCAACAAATTCAACATATGGTCTTGTTATGGAGGTAATG CTTGTCTGTGGAAAGTACAATTTGGTTTATGAGTTCTTCAATAAGGTGGATAAATCATCA ATACCTGGTGCTCTGAACTATAAAGTTCTTGTAAATGCACTTTGGAGAGAAGGAAAGATT GATGAAGCAGTGATGGCTGTGAAGGATATGGAAAGTCGTGGAATTGTTGGTTCTGCTAGT CTGTATTATGACCTAGCTCGATGCCTTTGCAGTGGTGGACGGTGCAAAGAAGCACTTCTC CAGGTTGAAAAGATATGCAAGGTTGCCAACAAACCGCTGGTTGTTACCTACACAGGACTC ATTCAGACTTGCATAGACAATGGTGGCATGGAAGATGCTAAATACATATTCAACCACATG TGCAACTACTGTTCACCTAATTCTGTTACTTGCAACATCATGATGAAGTCATATATTAAA CATGGAATGCTTGAAGACGCGAAAGACCTGCTCCATGATATTCTGAATTGCAGGATAAGG AGTAAAGCGGATTCTAATCAAGTGGCAACCGCTGACAAGTTTACTTTCAATACTTTCATG GAGGCCTGTGCTGCAGCAAAAAGGTGGAATGACTTCGAGTATGCGTTTCGTGAGATGTTA TTGAATGGGTACCATTTCGATGAGCGAAGACACCTTCGGATGGTACTTGACGCTTTTAGG CATGGGAAGGAACAGCTGTTGGATGATCTATGGCACTACCTGTGCCGTCACAGCCGTGTC CCGCCCTCCCCTGTCATAATGGAAAGATTCTGCCTAAAACTGATGCAGGGAGATACACTG GCGGCGATCTCCTGCGTCAGCAGCTTCCATGAGGGCAAGATATGCAACGTCTCCTCCATG TCATGGCTCAATCTGCTGAGCCGCAATGCAGATAGGCTGAAGGAGGAGCATGTTACCAAG TTAGCTCATGAACTCAACAGCCTCATTAGCTTGAGGAGTTCCTCTGATAGCATTAGTCTT AGCCTGTACCAAAAAATTATTAGTAGCTGTACGGCATTCCTCTCTGGAGCCACAGTTGTA GAAAAGGCACCTTCTGGCCAATAG

Peptide Sequence

PEP ID	Zm00001d011579_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:8:154890871:154895187:1 gene:Zm00001d011579 transcript:Zm00001d011579_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	MIHDAKIKFSDHSILRIVQMLGRYGNWKCVLQVVEWLQSHERFKSYKSRYIYTTVLDVLG KAKRPFEALNVFYTMQNQLSSYPDMAAYHCIAVTLGQAGLIKELFDVIDCMCSPPRKKFK LSPLQNWDPRLEPDLIVYNAVLNACVQQKQWEGAFWVLQQLKEKNICPTNSTYGLVMEVM LVCGKYNLVYEFFNKVDKSSIPGALNYKVLVNALWREGKIDEAVMAVKDMESRGIVGSAS LYYDLARCLCSGGRCKEALLQVEKICKVANKPLVVTYTGLIQTCIDNGGMEDAKYIFNHM CNYCSPNSVTCNIMMKSYIKHGMLEDAKDLLHDILNCRIRSKADSNQVATADKFTFNTFM EACAAAKRWNDFEYAFREMLLNGYHFDERRHLRMVLDAFRHGKEQLLDDLWHYLCRHSRV PPSPVIMERFCLKLMQGDTLAAISCVSSFHEGKICNVSSMSWLNLLSRNADRLKEEHVTK LAHELNSLISLRSSSDSISLSLYQKIISSCTAFLSGATVVEKAPSGQ

Transcript Sequence

Transcript ID	Zm00001d011579_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:154890871:154895187:1 gene:Zm00001d011579 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATATCCTAGAGAGACATTTCCCAATACTGAGGTCAACGCTGACAGTAATGTTCAAAGAAA TCAGCAAAGAGTGGAGACCTTAGGGAGAAACTTTGTAGTACGTAGGTTTGGGGAGATTGG CACCGACTCTAAGAAGTCTACCGTAAGCAAAATTTATGGGAGTACACAGGCAATGCCTGA GCATGATAGCCATTCAAGTGATAATTTGGAGAGTGATGAACGTAGGACAGTTCAATTGCA TAGAGGAGCAAATGTTAAAATGGGGAAATTTGTTAGTAGGGATGCTGAAACTACAGATTT TGATGATAGAGCTGCTTTCAAAACTTTTGAGGTATTTACTGATGTCAGGAATAGGCCACG GATCCTTCGAATGGAAATGGAAGAGAGAATCCAGAAGTTAGCTAGTCGATGTAAATACTC CAGAGTGGAAATTCTCCAAAATGATTCATGATGCAAAAATTAAATTCTCTGATCATTCTA TCCTAAGGATTGTTCAAATGTTGGGTCGATATGGAAATTGGAAATGTGTTTTGCAAGTGG TTGAATGGCTCCAGTCACATGAAAGGTTCAAATCCTACAAGAGCAGGTATATTTACACAA CAGTTCTCGATGTTCTAGGGAAGGCAAAGAGACCATTCGAGGCGTTGAATGTATTTTATA CCATGCAGAACCAATTGTCATCTTATCCTGACATGGCAGCTTATCATTGTATTGCTGTTA CTCTTGGGCAAGCTGGTCTTATAAAAGAATTATTTGATGTGATTGATTGCATGTGTTCTC CTCCTAGGAAGAAGTTCAAATTGAGCCCTCTTCAGAATTGGGATCCTCGCTTGGAACCAG ACCTTATTGTATACAATGCAGTTTTGAATGCTTGTGTGCAACAAAAGCAATGGGAAGGGG CATTTTGGGTACTGCAACAGTTGAAAGAGAAGAACATTTGTCCAACAAATTCAACATATG GTCTTGTTATGGAGGTAATGCTTGTCTGTGGAAAGTACAATTTGGTTTATGAGTTCTTCA ATAAGGTGGATAAATCATCAATACCTGGTGCTCTGAACTATAAAGTTCTTGTAAATGCAC TTTGGAGAGAAGGAAAGATTGATGAAGCAGTGATGGCTGTGAAGGATATGGAAAGTCGTG GAATTGTTGGTTCTGCTAGTCTGTATTATGACCTAGCTCGATGCCTTTGCAGTGGTGGAC GGTGCAAAGAAGCACTTCTCCAGGTTGAAAAGATATGCAAGGTTGCCAACAAACCGCTGG TTGTTACCTACACAGGACTCATTCAGACTTGCATAGACAATGGTGGCATGGAAGATGCTA AATACATATTCAACCACATGTGCAACTACTGTTCACCTAATTCTGTTACTTGCAACATCA TGATGAAGTCATATATTAAACATGGAATGCTTGAAGACGCGAAAGACCTGCTCCATGATA TTCTGAATTGCAGGATAAGGAGTAAAGCGGATTCTAATCAAGTGGCAACCGCTGACAAGT TTACTTTCAATACTTTCATGGAGGCCTGTGCTGCAGCAAAAAGGTGGAATGACTTCGAGT ATGCGTTTCGTGAGATGTTATTGAATGGGTACCATTTCGATGAGCGAAGACACCTTCGGA TGGTACTTGACGCTTTTAGGCATGGGAAGGAACAGCTGTTGGATGATCTATGGCACTACC TGTGCCGTCACAGCCGTGTCCCGCCCTCCCCTGTCATAATGGAAAGATTCTGCCTAAAAC TGATGCAGGGAGATACACTGGCGGCGATCTCCTGCGTCAGCAGCTTCCATGAGGGCAAGA TATGCAACGTCTCCTCCATGTCATGGCTCAATCTGCTGAGCCGCAATGCAGATAGGCTGA AGGAGGAGCATGTTACCAAGTTAGCTCATGAACTCAACAGCCTCATTAGCTTGAGGAGTT CCTCTGATAGCATTAGTCTTAGCCTGTACCAAAAAATTATTAGTAGCTGTACGGCATTCC TCTCTGGAGCCACAGTTGTAGAAAAGGCACCTTCTGGCCAATAGGTGGTGTTACAGAAAT TATAATAACCACAGTTAGTAAATTCTAGTACTCCAAATCATAATTACCACGACTGATGGA GTGTATTGCATTCAACGTTTGGTTATCGGTACAAAGTTAGAAATGGAAAATTT