Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011559_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:8:154455231:154456667:-1 gene:Zm00001d011559 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:empty pericarp16 description: empty pericarp16
Sequence

ATGCCGCCGGCCAACTCCACGCCGCCCAAATGGCCGAAGACCCTCACCGCAGACCACCTC
CACCGCCTGGTTCGGGCCGAACGGGACCCTCGCCGCGCCCTTGCGATCTTCGACGGTGCC
ACCGCCGCCGCTTCCACTTCGGCGCCAGACCCCATCACCCCGTCTCTGGCCACCGTCTCT
CTCCTTACCTCTCGCCTCGCCTCCGCCGGCCACCTCCCCCTCGCCACCTCCCTCCTCTCC
CGCTCACGCGGGGTCTTCCCCTCCGTTGCCGCTCTCGAGCCTCCCTTCCTCGGCCTCCTC
CGCGCCTTCTCCCGCACGCACCGCCCGCTCGCCGCTCTCCACCTCTTCCGCTCCGCCCCC
TCCGACCTCGCGCTCCCCCACTCTGCTCGCTCCTACAACGCCGTCCTCGCCGCTCTCGTC
GCGCACTCGCACCTCCCCCTGGCCCGCTCCCTACTCGCCGACATGCGCGCCGCCGGATTC
GCCCCCACCGCTGCCACGTACAACGTCCTCCTCAAGGCCCACTGCTCCGACGCCGCCGCT
CACATCGAAGATGCTCTCCGTCTTTTCCGGAACATCCCCAAACCCGATGTATGCTCCTAC
AACACCATCATCGACGGGCTCTGCCGCCGCGGCCGCCTGGCGGAGGCCCTCGACATGTTC
TCTGAGATGGTTGGGAAATGCATTGCACCTACCGTCGTTACTTACACCACTGTTATCCAT
TGGCTTGCAAGGGAGGGCTGCTTTGATGATGCCTTAAAGATATTTCATGAAATGGGGAGG
AGAGGGGTCTCGCCTAATCTGGTCACTTATAGTTCACTGATTGATGGACTGTGCAAGGGT
GGACGTGCCACATCGGCATTAGAATTGCTGGATAGAATGATCAAGGAGAAGAAACTGCCA
AATATGATCACATATAGCTCGGTGATTGATGGACTCTGTAAGGAGCACATGCTGAGTGAG
GCAATGGAGATCTTGGACCGGATGCGACTACAGGGGAGGAAGCCTGATGCTGGGTTGTTT
GGGAAGCTAATTGTTGGGCTATGTGATGCAGGAAGGGCTGTGGAAGCTGCAAATTACCTG
GATGAGATGGTTCTTGCCGGTATTGAACCAAACCGGGTGACTTGGAGCTTGCATGCCAGG
ATAAACAATACCGTGCTGACAGCATTATGTGATAAGGGTGAACTTGGCAGGGCTTTTCAG
GTCTACCAGAGCACAAGGACTCGTAGTATTTCTACCGACCCAACCACTTTCCATCTTCTT
GTTGAGAGCTTCTCCAAAAATAACATAGAGAAAGCTGCCCGTGTTGTGCTTGACATGCTG
TCGGAGAGATGCATCCCTGAGAGGGAGACATGGGATGTTATTATCAGTGGGTACTGGAGT
AAGAAAAAGGTGAGGCAAGAAGCCAAGGAAATCTGGGACCATATAACAGTTAGTTGA

Peptide Sequence

PEP ID

Zm00001d011559_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:8:154455231:154456667:-1 gene:Zm00001d011559 transcript:Zm00001d011559_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:empty pericarp16 description: empty pericarp16
Sequence

MPPANSTPPKWPKTLTADHLHRLVRAERDPRRALAIFDGATAAASTSAPDPITPSLATVS
LLTSRLASAGHLPLATSLLSRSRGVFPSVAALEPPFLGLLRAFSRTHRPLAALHLFRSAP
SDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAHCSDAAA
HIEDALRLFRNIPKPDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIH
WLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLP
NMITYSSVIDGLCKEHMLSEAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYL
DEMVLAGIEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQSTRTRSISTDPTTFHLL
VESFSKNNIEKAARVVLDMLSERCIPERETWDVIISGYWSKKKVRQEAKEIWDHITVS

Transcript Sequence

Transcript ID

Zm00001d011559_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:154455231:154456667:-1 gene:Zm00001d011559 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:empty pericarp16 description: empty pericarp16
Sequence

ATGCCGCCGGCCAACTCCACGCCGCCCAAATGGCCGAAGACCCTCACCGCAGACCACCTC
CACCGCCTGGTTCGGGCCGAACGGGACCCTCGCCGCGCCCTTGCGATCTTCGACGGTGCC
ACCGCCGCCGCTTCCACTTCGGCGCCAGACCCCATCACCCCGTCTCTGGCCACCGTCTCT
CTCCTTACCTCTCGCCTCGCCTCCGCCGGCCACCTCCCCCTCGCCACCTCCCTCCTCTCC
CGCTCACGCGGGGTCTTCCCCTCCGTTGCCGCTCTCGAGCCTCCCTTCCTCGGCCTCCTC
CGCGCCTTCTCCCGCACGCACCGCCCGCTCGCCGCTCTCCACCTCTTCCGCTCCGCCCCC
TCCGACCTCGCGCTCCCCCACTCTGCTCGCTCCTACAACGCCGTCCTCGCCGCTCTCGTC
GCGCACTCGCACCTCCCCCTGGCCCGCTCCCTACTCGCCGACATGCGCGCCGCCGGATTC
GCCCCCACCGCTGCCACGTACAACGTCCTCCTCAAGGCCCACTGCTCCGACGCCGCCGCT
CACATCGAAGATGCTCTCCGTCTTTTCCGGAACATCCCCAAACCCGATGTATGCTCCTAC
AACACCATCATCGACGGGCTCTGCCGCCGCGGCCGCCTGGCGGAGGCCCTCGACATGTTC
TCTGAGATGGTTGGGAAATGCATTGCACCTACCGTCGTTACTTACACCACTGTTATCCAT
TGGCTTGCAAGGGAGGGCTGCTTTGATGATGCCTTAAAGATATTTCATGAAATGGGGAGG
AGAGGGGTCTCGCCTAATCTGGTCACTTATAGTTCACTGATTGATGGACTGTGCAAGGGT
GGACGTGCCACATCGGCATTAGAATTGCTGGATAGAATGATCAAGGAGAAGAAACTGCCA
AATATGATCACATATAGCTCGGTGATTGATGGACTCTGTAAGGAGCACATGCTGAGTGAG
GCAATGGAGATCTTGGACCGGATGCGACTACAGGGGAGGAAGCCTGATGCTGGGTTGTTT
GGGAAGCTAATTGTTGGGCTATGTGATGCAGGAAGGGCTGTGGAAGCTGCAAATTACCTG
GATGAGATGGTTCTTGCCGGTATTGAACCAAACCGGGTGACTTGGAGCTTGCATGCCAGG
ATAAACAATACCGTGCTGACAGCATTATGTGATAAGGGTGAACTTGGCAGGGCTTTTCAG
GTCTACCAGAGCACAAGGACTCGTAGTATTTCTACCGACCCAACCACTTTCCATCTTCTT
GTTGAGAGCTTCTCCAAAAATAACATAGAGAAAGCTGCCCGTGTTGTGCTTGACATGCTG
TCGGAGAGATGCATCCCTGAGAGGGAGACATGGGATGTTATTATCAGTGGGTACTGGAGT
AAGAAAAAGGTGAGGCAAGAAGCCAAGGAAATCTGGGACCATATAACAGTTAGTTGA