Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011360_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:8:148422717:148435517:1 gene:Zm00001d011360 gene_biotype:protein_coding transcript_biotype:protein_coding description:CENPCB protein

Sequence

ATGGTGCTGAAGGAGCACGGGGACATCCAGACTCTCTACCATGATGATGCAATGAAAGCC
ATGCCCCCCACAAATGTCAGCAAAGGGCAACAGGGAAGAAGGGCAGCACTGGATCGCAAA
CGGGCTCGGTTCACTATGAAGGACACTGGAAGCAAAGCGGTGCCTGTTGTGGATCGATCT
AAGTTATTGAATATTTCGGATCCAGTCGCATTCTTCATGGCCTTGGATCGGCTTGAAGAA
GCTGAGGATGAGATCAAACGGCTAAATGGAGAGGCAGAAAAGCGCATATTGATTTTTGAT
CCTTTAGACGAACCCATTAGACAGCCTGGTTTGCGTGGGAGAAAATCATTCCGCAGTTTC
AAAGTAACTGAGGATGCTACTACTCAAGATCCCATTGAGGTACTGGCTTCCCAAACAGCA
ACTATGACAGGATCTCAGTTCTCACAGGATGTTATGCATGCTGTTGCTGACAAAAATGAA
CAGTCTGTTCCTTCACGATCTGGTGAAGCTATTTCAGATGTTTCAGGAAAAGAAGATTCA
TTAGCTGAGAAGGATGGCCGTGATGATTTGGCTTATTTACTGACCTCGATCCAAGATTTG
GATGAATCTGAAGAGGAAGCATTTATCCGGAAGACCTTAGGGCTTAAAGAAATAAGGAAG
GGAAGAGTTAGTCTCTGTAACTCCATTCCTGGAGTCAGGTCCTTAAGAAGCGATACTGAA
CAAAAAGGTTCAATGAAGGTTCGCCCTCCAGAAAGTCATTTGCCTCAGACTCGCCAAGAT
CGAATTTCAGAGTTGGAGAAACATTTATTTCCTGGAGGTGCAGCAAATGCTAAATGCACA
GATGATGAATCTGAAGGGTCACCAGATATTGTGATGGGTGAACCATCATTAGTGCATGAT
TCTTCCGAGGTTCTGATGACCAATGAGAACTCTACTGGAAGTGAAATTGACAGGAGGACC
CCAAATCTGTGTGCCAGAGCAGCAGACCACGCTCTTGATCCTGAACCAAACTTGCCTGAT
CATGCATACGAAAGGCAAACCAGAGGCTCCTCACTTGGTTTGTGCAAAAACACAGAAGTT
GCCAATGAACACGAGGAAGATGATGTACACATAGAATATCCAACTACTGGCGGGTCTACT
TATCAAACAGAAGTTTCTTCTCATGATTTGGAGGGCAGCTTGACAGAAGAATTGGTCAGT
GAACCAGGTAGGCATGCGGCTCCAGATGATATCTATAGGACTTCACATGCAGCTGAGGAT
AGCATTCAACATCTAGAAGTGGTCAAACAGGGTGGTGTTCTACAAGACAAGTCAAGCCAG
TCGTTGGAGATGCCTCTGGAAGATATTGATCCACTATATCGGCCTCAGATGCATGGTGGA
AGCACTAAGAAATCGACACCTGTTCTGTGCAATGCACTGTCCCCGATCGAACAGAAGCAA
CAAGCAGCTCAAGAAGGGAAAAGGAAGCAACAGGCAAAGAGGGTAAAAAAAGTGTCTGAT
GAATCTAGCCATGCACTGGAAATATCCCAAGCAAATTTCGAACCGGAGAATGAACCTCAT
AATGTTGACGTGAACATGGAGCAACCGACAGTTATGAGTAGCGCCAAGGGGCAAAAGGGA
GCTCAAAGGAGAAACAAG

Peptide Sequence

PEP ID

Zm00001d011360_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:8:148422717:148435517:1 gene:Zm00001d011360 transcript:Zm00001d011360_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:CENPCB protein

Sequence

MVLKEHGDIQTLYHDDAMKAMPPTNVSKGQQGRRAALDRKRARFTMKDTGSKAVPVVDRS
KLLNISDPVAFFMALDRLEEAEDEIKRLNGEAEKRILIFDPLDEPIRQPGLRGRKSFRSF
KVTEDATTQDPIEVLASQTATMTGSQFSQDVMHAVADKNEQSVPSRSGEAISDVSGKEDS
LAEKDGRDDLAYLLTSIQDLDESEEEAFIRKTLGLKEIRKGRVSLCNSIPGVRSLRSDTE
QKGSMKVRPPESHLPQTRQDRISELEKHLFPGGAANAKCTDDESEGSPDIVMGEPSLVHD
SSEVLMTNENSTGSEIDRRTPNLCARAADHALDPEPNLPDHAYERQTRGSSLGLCKNTEV
ANEHEEDDVHIEYPTTGGSTYQTEVSSHDLEGSLTEELVSEPGRHAAPDDIYRTSHAAED
SIQHLEVVKQGGVLQDKSSQSLEMPLEDIDPLYRPQMHGGSTKKSTPVLCNALSPIEQKQ
QAAQEGKRKQQAKRVKKVSDESSHALEISQANFEPENEPHNVDVNMEQPTVMSSAKGQKG
AQRRNK

Transcript Sequence

Transcript ID

Zm00001d011360_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:148422717:148435517:1 gene:Zm00001d011360 gene_biotype:protein_coding transcript_biotype:protein_coding description:CENPCB protein

Sequence

GGTCTGAGGAGCTGGTTAAGCAGGCTGCAATGGTGCTGAAGGAGCACGGGGACATCCAGA
CTCTCTACCATGATGATGCAATGAAAGCCATGCCCCCCACAAATGTCAGCAAAGGGCAAC
AGGGAAGAAGGGCAGCACTGGATCGCAAACGGGCTCGGTTCACTATGAAGGACACTGGAA
GCAAAGCGGTGCCTGTTGTGGATCGATCTAAGTTATTGAATATTTCGGATCCAGTCGCAT
TCTTCATGGCCTTGGATCGGCTTGAAGAAGCTGAGGATGAGATCAAACGGCTAAATGGAG
AGGCAGAAAAGCGCATATTGATTTTTGATCCTTTAGACGAACCCATTAGACAGCCTGGTT
TGCGTGGGAGAAAATCATTCCGCAGTTTCAAAGTAACTGAGGATGCTACTACTCAAGATC
CCATTGAGGTACTGGCTTCCCAAACAGCAACTATGACAGGATCTCAGTTCTCACAGGATG
TTATGCATGCTGTTGCTGACAAAAATGAACAGTCTGTTCCTTCACGATCTGGTGAAGCTA
TTTCAGATGTTTCAGGAAAAGAAGATTCATTAGCTGAGAAGGATGGCCGTGATGATTTGG
CTTATTTACTGACCTCGATCCAAGATTTGGATGAATCTGAAGAGGAAGCATTTATCCGGA
AGACCTTAGGGCTTAAAGAAATAAGGAAGGGAAGAGTTAGTCTCTGTAACTCCATTCCTG
GAGTCAGGTCCTTAAGAAGCGATACTGAACAAAAAGGTTCAATGAAGGTTCGCCCTCCAG
AAAGTCATTTGCCTCAGACTCGCCAAGATCGAATTTCAGAGTTGGAGAAACATTTATTTC
CTGGAGGTGCAGCAAATGCTAAATGCACAGATGATGAATCTGAAGGGTCACCAGATATTG
TGATGGGTGAACCATCATTAGTGCATGATTCTTCCGAGGTTCTGATGACCAATGAGAACT
CTACTGGAAGTGAAATTGACAGGAGGACCCCAAATCTGTGTGCCAGAGCAGCAGACCACG
CTCTTGATCCTGAACCAAACTTGCCTGATCATGCATACGAAAGGCAAACCAGAGGCTCCT
CACTTGGTTTGTGCAAAAACACAGAAGTTGCCAATGAACACGAGGAAGATGATGTACACA
TAGAATATCCAACTACTGGCGGGTCTACTTATCAAACAGAAGTTTCTTCTCATGATTTGG
AGGGCAGCTTGACAGAAGAATTGGTCAGTGAACCAGGTAGGCATGCGGCTCCAGATGATA
TCTATAGGACTTCACATGCAGCTGAGGATAGCATTCAACATCTAGAAGTGGTCAAACAGG
GTGGTGTTCTACAAGACAAGTCAAGCCAGTCGTTGGAGATGCCTCTGGAAGATATTGATC
CACTATATCGGCCTCAGATGCATGGTGGAAGCACTAAGAAATCGACACCTGTTCTGTGCA
ATGCACTGTCCCCGATCGAACAGAAGCAACAAGCAGCTCAAGAAGGGAAAAGGAAGCAAC
AGGCAAAGAGGGTAAAAAAAGTGTCTGATGAATCTAGCCATGCACTGGAAATATCCCAAG
CAAATTTCGAACCGGAGAATGAACCTCATAATGTTGACGTGAACATGGAGCAACCGACAG
TTATGAGTAGCGCCAAGGGGCAAAAGGGAGCTCAAAGGAGAAACAAG