Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011298_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:8:146108796:146113773:1 gene:Zm00001d011298 gene_biotype:protein_coding transcript_biotype:protein_coding description:C3HC zinc finger-like
Sequence

ATGGCCGCCGGCGAAGGCGGAGGTGGGGACATCGGCGCCGACTCGGAGCGGCGCCTGCAA
AAGGCTATGGATAAGCTCTACCACTTCCCCAAGCCCAAGTCGAGTAGCACCGGTGGCTCC
AAGCCCTCTTCGTCGACCTCGGCTCCAAGCTCCGGGAGAGCGGTGGGGAAGGCAGCGGCG
GAGGCAGCGAGGAGGTTCGGGGTGGTGCGCGGGTCGCGACTCCCGCATCAGATGTTGGCC
ATGGCAGCGATCTCGCCGCCACCGCCGTGCCGCCCCTGGGACCGCGCCGACCTCATGCGT
CGTCTCGGGTCATTCAAAGCCATGACCTGGTTCGCCAAGCCCAAGGTTATTAGTCCCGTT
AACTGTGCAAGAAGAGGATGGACTAACATTGAGCCGGATGTTATAACATGTGAAGCTTGT
GGGGCACGACTCCTGTTCTCCACTCCTTCCTCATGGACAACACAGCAAGTTGAAAAGGCT
GCTGCTGTTTTCAGCCTGAAGCTGGACTCTGGACATAAACTACTTTGCCCGTGGATTGAT
AACATATGTGATGAATCACTTGCTTTATTTCCACCAACACCTCCTCCTGTTTTAGTTGGG
AACTACTATGAGCTTTTGTCCTCTCTGCTGCGACTTTTAGCACTCCCAAGAATTTCCTGC
TCTTCTCTTGAGACCATGAAAAAGAGGAATCCACAGCTAGAGCAGTTCCTATCAGAACCA
TTCTCTTCATCAGTTGTTCTCAAAGGGGGACTTATGCTTACTGAGGACTCTACAATTAAG
GATTTGGATGATGCTTTTCAAGATGCTGACACATATTATCAGGCACTTAAGATAATAAGT
TTGTGTGGATGGGAACCCAGACTACTTCCTTATGCTGTTGACTGTGGAACTGAGTTTCAC
TCCGATGCAAACTCTACCTCTAAATTGGCTCAACCAGAGCAATCAAGTAAGACAATGGAG
GATCGGGTAATACTTTACTCGCCTGATGGTGCTCGACCATCTGTTGATGTTAATCAAGAA
GATCAGCATTATGATCCACTATCAGTTGTTTTAGATTGCCAGTTTTGTGGTGCATGTGTT
GCCTTGTGGCCTTTTTCTCTTGTGCAACGACCTCTTCAACTCTTTAAGCTGATTTCAGAT
TCTAATAGACAAGATGACCAGGATAATGGACATGCCAACATAGTGAGTGGAGTAGGACAT
TCAAAGGATGCCAACATTAGTTTTAACTTCACTATTGCTGGGGGTCCTCCACCAACTAGA
CAAAGTTTCCGACCAAAAGTTTCATTTCCTGTCGTTAGTCGACATTTGAAAGCTGATTTG
AACTCCCGTGTGAATTTGCTTTCCTCCAGAAGTGATTGCTACATGGTTCCTGTTGCTTCG
CATGCTTCAGGTTCCATGAAACGTAAAAGAAGCACAGATGAGCCTCATTTGTTGGAAGGT
GATGCCGATGATGTTGATACATCCACCATAGGGGCAAATCATGACCAGCCAGGAGAAAAT
TCTGAAAAGAGCATATCAAACTTAGTAGTGAGCACTGAACAGAAACAAGATGGTTCACAT
TCCAATGCAGCTAAGGATACTGAATTGGATGAAGCTTCCAATGAAACACAACCAGAAACA
GGTTCTCCATTAAGAAAAAGTATAACAAGCACATATGCAGATGCTGATCAACATGGATTG
GAACCTAGATTTTGCTCAGTCCAGGGTACGAATGAAGAACCTTCTGGTGGAGTGACCCTG
ACAGAGATGCATGCAAACAATTCCAGGTCAACTGAGGTCAGCACAATCACAGAATCATTA
GTTAACAGGGAAAAAGAAAAACAAGGGCTGTATGACAGAATGAATGAGTTTGATCCTATC
AAGCAGCACCGGACGTTCTGCCCTTGGACTTCCCCTGATTACGGCGAACCCTTGCCTGGA
TGGAGGCTTACTCTCTCGGCATTACTTGCTGGGGACAAGAGATCTGATGGGGACTTGCAA
GTGGATATTCAGACCAGCCTTCTCGATGAGGAGGATGACCCTCTTACCTCTGTTAGGAAG
CTTTTCATGACACCACCTCCGAAAAGGCGGAGGATACAGCAATCTGAAAAGAGCTGA

Peptide Sequence

PEP ID

Zm00001d011298_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:8:146108796:146113773:1 gene:Zm00001d011298 transcript:Zm00001d011298_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:C3HC zinc finger-like
Sequence

MAAGEGGGGDIGADSERRLQKAMDKLYHFPKPKSSSTGGSKPSSSTSAPSSGRAVGKAAA
EAARRFGVVRGSRLPHQMLAMAAISPPPPCRPWDRADLMRRLGSFKAMTWFAKPKVISPV
NCARRGWTNIEPDVITCEACGARLLFSTPSSWTTQQVEKAAAVFSLKLDSGHKLLCPWID
NICDESLALFPPTPPPVLVGNYYELLSSLLRLLALPRISCSSLETMKKRNPQLEQFLSEP
FSSSVVLKGGLMLTEDSTIKDLDDAFQDADTYYQALKIISLCGWEPRLLPYAVDCGTEFH
SDANSTSKLAQPEQSSKTMEDRVILYSPDGARPSVDVNQEDQHYDPLSVVLDCQFCGACV
ALWPFSLVQRPLQLFKLISDSNRQDDQDNGHANIVSGVGHSKDANISFNFTIAGGPPPTR
QSFRPKVSFPVVSRHLKADLNSRVNLLSSRSDCYMVPVASHASGSMKRKRSTDEPHLLEG
DADDVDTSTIGANHDQPGENSEKSISNLVVSTEQKQDGSHSNAAKDTELDEASNETQPET
GSPLRKSITSTYADADQHGLEPRFCSVQGTNEEPSGGVTLTEMHANNSRSTEVSTITESL
VNREKEKQGLYDRMNEFDPIKQHRTFCPWTSPDYGEPLPGWRLTLSALLAGDKRSDGDLQ
VDIQTSLLDEEDDPLTSVRKLFMTPPPKRRRIQQSEKS

Transcript Sequence

Transcript ID

Zm00001d011298_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:146108796:146113773:1 gene:Zm00001d011298 gene_biotype:protein_coding transcript_biotype:protein_coding description:C3HC zinc finger-like
Sequence

GCCCCCCATCTCCCCCGCACCGCGCACCTCTATGGCCGCCGGCGAAGGCGGAGGTGGGGA
CATCGGCGCCGACTCGGAGCGGCGCCTGCAAAAGGCTATGGATAAGCTCTACCACTTCCC
CAAGCCCAAGTCGAGTAGCACCGGTGGCTCCAAGCCCTCTTCGTCGACCTCGGCTCCAAG
CTCCGGGAGAGCGGTGGGGAAGGCAGCGGCGGAGGCAGCGAGGAGGTTCGGGGTGGTGCG
CGGGTCGCGACTCCCGCATCAGATGTTGGCCATGGCAGCGATCTCGCCGCCACCGCCGTG
CCGCCCCTGGGACCGCGCCGACCTCATGCGTCGTCTCGGGTCATTCAAAGCCATGACCTG
GTTCGCCAAGCCCAAGGTTATTAGTCCCGTTAACTGTGCAAGAAGAGGATGGACTAACAT
TGAGCCGGATGTTATAACATGTGAAGCTTGTGGGGCACGACTCCTGTTCTCCACTCCTTC
CTCATGGACAACACAGCAAGTTGAAAAGGCTGCTGCTGTTTTCAGCCTGAAGCTGGACTC
TGGACATAAACTACTTTGCCCGTGGATTGATAACATATGTGATGAATCACTTGCTTTATT
TCCACCAACACCTCCTCCTGTTTTAGTTGGGAACTACTATGAGCTTTTGTCCTCTCTGCT
GCGACTTTTAGCACTCCCAAGAATTTCCTGCTCTTCTCTTGAGACCATGAAAAAGAGGAA
TCCACAGCTAGAGCAGTTCCTATCAGAACCATTCTCTTCATCAGTTGTTCTCAAAGGGGG
ACTTATGCTTACTGAGGACTCTACAATTAAGGATTTGGATGATGCTTTTCAAGATGCTGA
CACATATTATCAGGCACTTAAGATAATAAGTTTGTGTGGATGGGAACCCAGACTACTTCC
TTATGCTGTTGACTGTGGAACTGAGTTTCACTCCGATGCAAACTCTACCTCTAAATTGGC
TCAACCAGAGCAATCAAGTAAGACAATGGAGGATCGGGTAATACTTTACTCGCCTGATGG
TGCTCGACCATCTGTTGATGTTAATCAAGAAGATCAGCATTATGATCCACTATCAGTTGT
TTTAGATTGCCAGTTTTGTGGTGCATGTGTTGCCTTGTGGCCTTTTTCTCTTGTGCAACG
ACCTCTTCAACTCTTTAAGCTGATTTCAGATTCTAATAGACAAGATGACCAGGATAATGG
ACATGCCAACATAGTGAGTGGAGTAGGACATTCAAAGGATGCCAACATTAGTTTTAACTT
CACTATTGCTGGGGGTCCTCCACCAACTAGACAAAGTTTCCGACCAAAAGTTTCATTTCC
TGTCGTTAGTCGACATTTGAAAGCTGATTTGAACTCCCGTGTGAATTTGCTTTCCTCCAG
AAGTGATTGCTACATGGTTCCTGTTGCTTCGCATGCTTCAGGTTCCATGAAACGTAAAAG
AAGCACAGATGAGCCTCATTTGTTGGAAGGTGATGCCGATGATGTTGATACATCCACCAT
AGGGGCAAATCATGACCAGCCAGGAGAAAATTCTGAAAAGAGCATATCAAACTTAGTAGT
GAGCACTGAACAGAAACAAGATGGTTCACATTCCAATGCAGCTAAGGATACTGAATTGGA
TGAAGCTTCCAATGAAACACAACCAGAAACAGGTTCTCCATTAAGAAAAAGTATAACAAG
CACATATGCAGATGCTGATCAACATGGATTGGAACCTAGATTTTGCTCAGTCCAGGGTAC
GAATGAAGAACCTTCTGGTGGAGTGACCCTGACAGAGATGCATGCAAACAATTCCAGGTC
AACTGAGGTCAGCACAATCACAGAATCATTAGTTAACAGGGAAAAAGAAAAACAAGGGCT
GTATGACAGAATGAATGAGTTTGATCCTATCAAGCAGCACCGGACGTTCTGCCCTTGGAC
TTCCCCTGATTACGGCGAACCCTTGCCTGGATGGAGGCTTACTCTCTCGGCATTACTTGC
TGGGGACAAGAGATCTGATGGGGACTTGCAAGTGGATATTCAGACCAGCCTTCTCGATGA
GGAGGATGACCCTCTTACCTCTGTTAGGAAGCTTTTCATGACACCACCTCCGAAAAGGCG
GAGGATACAGCAATCTGAAAAGAGCTGAGAAGCGAACTGGATCCACATGTTGGGAAAGCT
GGGGTCAAACTCATACGGTTGGACAATATCATGGGGCAGATCCAGAATGCCATATGAATT
GAATATTGGAACTGGAAATGTTTACGCTGCACATCTGTGCGATGTACAAATTCTTGAGGC
AGCAGCTGGGAAAATGATTTATGACATGGTTAATTGTTCCAGGACGATACTGCTGCTGTA
GAAGCCATTGTTGTGGTGGTTAAGGAATGTAGAAGTTGGGTTACCTCTTCCCCATTTGAA
ACCACCTGAGCATATACACCGTGATTTCGTAGCTTAGTAATGTTGTCAACTTGTTATATT
GCATTCTTTATATTGCTGTACGATCACCTGTTAACTGTTAAACCCTCGGGGAATTTTGAT
TGGCAAGAGCGAATTCGTTTGACGCCTTTGCTGGCTGACTTACCTGTAATAACTGCTTAA
AGATCTGATCGGCTTGAAACGATAGGTTCTGCCATTCAATAGCCTACAATGAATCATTTT
TGTAAACAGGTCTACCGTGCGTGTCTTCCAGAAAAAAAAGGATAAACGTTTGTGCCGTGC
TGCATCACTGCATGGCTTCT