Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011222_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:8:143429143:143434206:1 gene:Zm00001d011222 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-binding EF hand family protein
Sequence

ATGGCACCGGCGCCGGCAGCGGCCTCGGCGGGGCGGAAGTCTCATGTCACCGTTCTCCTC
CTCTACGTAGTGTGCGGCTTGATCCTGCTGCTTCTCCTCGCCTCCTACTCGCCCCGCCTC
CAGCCCCACGCCCACGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCAAAGAGCTCC
TTACCATCCGACGCTTCCTCCGGTGGGAACGGGGGGCAACAGAAGACGCAGCACCAAAAC
CACCATGCGGCCTCCTTCGACCCGACCATCGCCGAGCTGGAGCGTCGGCTGGACGACAAG
GAGTGGGAGCGCGAGCACTACAGCCTCCTCCACGGCGGCGAGCCGGATGACCATATGAAG
GAGTGGGAGGAGTTCCTCAAGGAGGAGGAGGACTTCATCAACGACGACGACCGATTCAAC
ATCGCCGACCGTATCCGCGCGCTCTTCCCCAAGATCGACGTCGCCCCGCAGGACGGATTC
GTCTCCCTCGACGAGCTCACCGCCTGGAACCTCCAGCAGGCCAGGGCTGACCAGCACCAC
CGCTCCGCCAGGGAGATGGAGCTCTACAACAAGAACGGCGATGAGATAGTCTCATTCGAA
GCCTTCAATGCTCTGCGCCAAGAATCCCATGGAGAGGGCAATATGCTTGGGTTCGAATGG
TGGAAGGAGGATCATTTCAATGCGTCAGATGCAAACGCTGATGGTTTCCTTGATAAAACT
GAGTTCAATGATTTCCTTAATCCAAGTGATTCGGATAATCCCAAAATCATCAATTTGCTC
TGCAAACAAGAAATAAGGCAGAGGGATAAAGATGGTGATGGAAAGTTAAACTTTGAAGAA
TACTTTACTGGGCTACATGACCATATACATGGTTATGATGACGAGAATGCAGATATTTCC
CAAATTGGGAACATAACAGTTGCGAAGGATCGGTTTTTCAAACTTGACAAAGATAATGAT
GGGTTTATTTCGGAGCATGAACTAGAGCCTGTTCTTGATAAGCTCTATCTTTCTGAACGC
TATTATTCTAGACAGCAAGCCATCCATGCTATTTCAGAGGTTTGGTTCATATTTCCCCCT
TTTGCTTCTTTTTGTTGTTCTTTGAGATATCAGAATATGGCCCCATGGTCTAGCTAA

Peptide Sequence

PEP ID

Zm00001d011222_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:8:143429143:143434206:1 gene:Zm00001d011222 transcript:Zm00001d011222_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-binding EF hand family protein
Sequence

MAPAPAAASAGRKSHVTVLLLYVVCGLILLLLLASYSPRLQPHAHGRSLHRRLKLHPKSS
LPSDASSGGNGGQQKTQHQNHHAASFDPTIAELERRLDDKEWEREHYSLLHGGEPDDHMK
EWEEFLKEEEDFINDDDRFNIADRIRALFPKIDVAPQDGFVSLDELTAWNLQQARADQHH
RSAREMELYNKNGDEIVSFEAFNALRQESHGEGNMLGFEWWKEDHFNASDANADGFLDKT
EFNDFLNPSDSDNPKIINLLCKQEIRQRDKDGDGKLNFEEYFTGLHDHIHGYDDENADIS
QIGNITVAKDRFFKLDKDNDGFISEHELEPVLDKLYLSERYYSRQQAIHAISEVWFIFPP
FASFCCSLRYQNMAPWSS

Transcript Sequence

Transcript ID

Zm00001d011222_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:143429143:143434206:1 gene:Zm00001d011222 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-binding EF hand family protein
Sequence

GGGTCCAAATCTCGGACCCGCAAACGGACCTCACCCACCCGTTCCTCCATCTCCGCCCCT
TGCCGGCGATGGCACCGGCGCCGGCAGCGGCCTCGGCGGGGCGGAAGTCTCATGTCACCG
TTCTCCTCCTCTACGTAGTGTGCGGCTTGATCCTGCTGCTTCTCCTCGCCTCCTACTCGC
CCCGCCTCCAGCCCCACGCCCACGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCAA
AGAGCTCCTTACCATCCGACGCTTCCTCCGGTGGGAACGGGGGGCAACAGAAGACGCAGC
ACCAAAACCACCATGCGGCCTCCTTCGACCCGACCATCGCCGAGCTGGAGCGTCGGCTGG
ACGACAAGGAGTGGGAGCGCGAGCACTACAGCCTCCTCCACGGCGGCGAGCCGGATGACC
ATATGAAGGAGTGGGAGGAGTTCCTCAAGGAGGAGGAGGACTTCATCAACGACGACGACC
GATTCAACATCGCCGACCGTATCCGCGCGCTCTTCCCCAAGATCGACGTCGCCCCGCAGG
ACGGATTCGTCTCCCTCGACGAGCTCACCGCCTGGAACCTCCAGCAGGCCAGGGCTGACC
AGCACCACCGCTCCGCCAGGGAGATGGAGCTCTACAACAAGAACGGCGATGAGATAGTCT
CATTCGAAGCCTTCAATGCTCTGCGCCAAGAATCCCATGGAGAGGGCAATATGCTTGGGT
TCGAATGGTGGAAGGAGGATCATTTCAATGCGTCAGATGCAAACGCTGATGGTTTCCTTG
ATAAAACTGAGTTCAATGATTTCCTTAATCCAAGTGATTCGGATAATCCCAAAATCATCA
ATTTGCTCTGCAAACAAGAAATAAGGCAGAGGGATAAAGATGGTGATGGAAAGTTAAACT
TTGAAGAATACTTTACTGGGCTACATGACCATATACATGGTTATGATGACGAGAATGCAG
ATATTTCCCAAATTGGGAACATAACAGTTGCGAAGGATCGGTTTTTCAAACTTGACAAAG
ATAATGATGGGTTTATTTCGGAGCATGAACTAGAGCCTGTTCTTGATAAGCTCTATCTTT
CTGAACGCTATTATTCTAGACAGCAAGCCATCCATGCTATTTCAGAGGTTTGGTTCATAT
TTCCCCCTTTTGCTTCTTTTTGTTGTTCTTTGAGATATCAGAATATGGCCCCATGGTCTA
GCTAATATACACAAGTCATGTTTCCATCTGTTATTCTACTTCAAGGTGTATATAGATTCT
ACGGTCATGCTTATGTGCATAATCAGATGGCATAGTTTGTTTAATTTTTACTTTATAAGT
TTCTTTTTTGAACCAT