Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011099_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:8:139015153:139022307:1 gene:Zm00001d011099 gene_biotype:protein_coding transcript_biotype:protein_coding description:Methionine S-methyltransferase
Sequence

ATGGTATTCAACATGGGAGGTCGACCAGGACAGGGTGTCTGTGAACGTCTATTTCGACGG
CGTGGGTTTCGCATTACTAAGCTCTGGCAAACCAAAATTATGCAGGCTGCTGACACAGAT
ATTTCAGCTTTGGTTGAAATTGAGAAAAACAGCAGACATCGATTCGAGTTCTTCATGGAT
CTTGTTGGGGATCAGCCTATCTGTGCTCGCACAGCCTGGGCATACATGAAATCTGGTGGT
CACATTTCACATGCTTTGTCTGTGTATAGCTGTCAACTTCGCCAGCCCAACCAGGTGAAG
AAAATATTTGAGTTTCTTAAAGATGGATTCCATGAAGTCAGCAGTTCCCTTGATTTATCC
TTTGACGATGATTCTGTAGCTGAGGAAAAAATTCCCTTCCTAGCTTACCTTGCTAGTTTT
CTGAAAGAGAACAAGTCAAATCCCTGTGAGCCACCAGCTGGATGTCTAAACTTTAGGAAA
CTTGTTGCTGGATTTATGAAGAGCTACCATCACATTCCTCTAACTCCTGATAATGTCGTT
GTGTTCCCTTCTCGCTCTGTGGCAATAGAGAATGCTCTTCAATTGTTCTCACCGGCGCTT
GCAATTGTTGATGAACATTTAACCAGACACTTGCCCAAGCAATGGTTAACATCTTTAGCA
ATTGAGGGAAGAGCAGATTGTAATCACGCCGATGGTACAGTTACTGTAATTGAGGCACCA
CGCCAATCAGATTTACTGATTGAGTTGATCAGGAAGCTGCAGCCTCAGGTGGTTGTTACT
GGCATGGCTCAATTTGAGGCTATCACCAGTGCTGCTTTTGAGAACCTACTAAACGTAACA
AAAGATGTTGGCTCCCGGCTGTTCCTGGATATTTCTGAGCATCTGGAGTTGTCTAGCCTG
CCAAGCTCTAATGGTGTATTGAAATATCTTGCTGGAAAGACATTACCGTCACATGCAGCT
ATACTGTGTGGTTTAGTAAAGAATCAGGTGTACTCTGATCTGGAGGTTGCTTTTGCCATT
TCCGAAGATGCAGCTGTATATAAAGCATTATCACAAACTATTGAGCTATTGGAAGGCCAC
ACTTCTCTGATCAGCCAGCACTATTATGGTTGCCTTTTCCACGAGCTTCTGGCATTTCAG
ATTGCTGACCGTCATCCACAGCAAGAGAGACAACCTGCGGAAGTGATACCTCAGCAGATG
ATAGGATTTTCTGACCCAGCTGTGTCTACCCTAAAGGCTACTGAATTTTTCGTTCCTGGT
TCAGCTGAATCCAGCATTATTCATATGGATTTAGATCGCAGCTTCCTGCCAGTACCTTCA
GCAGTGAATGCGTCTGTTTTTGAAAGTTTTGTCAGGCAGAACATCACTGATTCTGAAACC
GATGTCCGTTCCAGCATCCAACAGCTGGTGAAAGACAGCTATGGTTTATCCGCAGCTGGT
TGTGCAGAAATTATCTACGGAAACACCTCCGTAGCACTCTTCAACAAGCTCGTCCTTTGT
TGCATGCAAGAACAGGGCACCTTGCTTTTCCCCTTGGGCACCAATGGCCACTACGTCTCC
GCAGCAAAGTTTGTGAACGCTAGCACCGTGACTATACCGACAAATCCCAGTTCAGGGTTC
AGGATCGAGCCCAAGGTTCTAGCTGACACTCTTAAGAATGTATCTCGGCCGTGGGTGTAT
GTTTGCGGCCCCACGATCAACCCTACTGGCTTTCTGTACAGTGACAGTGACATCCGAGAG
CTGCTCTCCGTATGCGCTGAATATGGAGCCAGGGTAGTGATAGATACATCCTTCTCTGGC
CTGGAGTACGAGACCGATGGATGGAGGCAGTGGAATCTGGCAGGATGCCTTTCCTCTTTG
AAGCGTTCAGAGCCATCGTTCTCTGTGGTCCTGCTCGGAGAGCTGTCCTTTGCGCTGACT
GCAGGTGGGCATGACTTTGGGTTTGTGATATTGGGTGACTCGTCGTTGGCTGAGACGTTC
CATAGTTTTTCTAGCTTGAGTCGACCGCACACCACATTGAAGTACACTTTCAAGAAGCTG
CTGGGGCTTAAGAACCAGAAGGACCAGCATTTCTCGGATCTGATAGTGGAGCAGAAGGAG
GAGCTGAAGAATCGCGCCAACCAGTTGATACAGACACTGGAGAGCTGTGGCTGGGAAGCT
GCCATCGGTTGCGGTGGCATCTCGATGCTGGCGAAGCCCACCGCGTACATGGGGAAGGCC
TTCAAAGCTGCTGGCTTCGACGGCGAGCTGGACGCGAGCAACATCCGGGAAGCCATCCTG
AGGGCCACTGGGCTGTGCATAAACAGCAGCTCCTGGACGGGGATCCCTGGCTACTGCCGG
TTCAGCTTTGCTCTGGAGAGGGGGGAATTCGAGCGTGCGATGGGATGCATAGCTCGGTTC
AAGGAGCTGGTTCTGGGAGGCGCTCAGATGAATGGTGCCTGA

Peptide Sequence

PEP ID

Zm00001d011099_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:8:139015153:139022307:1 gene:Zm00001d011099 transcript:Zm00001d011099_T018 gene_biotype:protein_coding transcript_biotype:protein_coding description:Methionine S-methyltransferase
Sequence

MVFNMGGRPGQGVCERLFRRRGFRITKLWQTKIMQAADTDISALVEIEKNSRHRFEFFMD
LVGDQPICARTAWAYMKSGGHISHALSVYSCQLRQPNQVKKIFEFLKDGFHEVSSSLDLS
FDDDSVAEEKIPFLAYLASFLKENKSNPCEPPAGCLNFRKLVAGFMKSYHHIPLTPDNVV
VFPSRSVAIENALQLFSPALAIVDEHLTRHLPKQWLTSLAIEGRADCNHADGTVTVIEAP
RQSDLLIELIRKLQPQVVVTGMAQFEAITSAAFENLLNVTKDVGSRLFLDISEHLELSSL
PSSNGVLKYLAGKTLPSHAAILCGLVKNQVYSDLEVAFAISEDAAVYKALSQTIELLEGH
TSLISQHYYGCLFHELLAFQIADRHPQQERQPAEVIPQQMIGFSDPAVSTLKATEFFVPG
SAESSIIHMDLDRSFLPVPSAVNASVFESFVRQNITDSETDVRSSIQQLVKDSYGLSAAG
CAEIIYGNTSVALFNKLVLCCMQEQGTLLFPLGTNGHYVSAAKFVNASTVTIPTNPSSGF
RIEPKVLADTLKNVSRPWVYVCGPTINPTGFLYSDSDIRELLSVCAEYGARVVIDTSFSG
LEYETDGWRQWNLAGCLSSLKRSEPSFSVVLLGELSFALTAGGHDFGFVILGDSSLAETF
HSFSSLSRPHTTLKYTFKKLLGLKNQKDQHFSDLIVEQKEELKNRANQLIQTLESCGWEA
AIGCGGISMLAKPTAYMGKAFKAAGFDGELDASNIREAILRATGLCINSSSWTGIPGYCR
FSFALERGEFERAMGCIARFKELVLGGAQMNGA

Transcript Sequence

Transcript ID

Zm00001d011099_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:139015153:139022307:1 gene:Zm00001d011099 gene_biotype:protein_coding transcript_biotype:protein_coding description:Methionine S-methyltransferase
Sequence

AGGCCGTGCTCGAGCGCCTCCACGCCCCCGCCACGCGCCCCGCCGCACGACGCCTCCTTG
GCGCCGTCCGCCGACGCTTCGCCGCCTCCCGCGCCGCGGGGGAGGACTGCTTCCGCACCT
TCCACTTTCGCATCCACGACGTCGTCCTCGACCCACACGTACAAGGTTTCCAACAAATGA
AGAAGTTGACAATGATGGAGATACCAAGCATCTTCATTCCTGAAGATTGGTCATTCACTT
TCTATGAGGGCCTCAACCGTCATCCAGACTCCATTTTCAGGGATAAGACAGTAGCTGAGC
TGGGATGTGGCAACGGTTGGATATCTATTGCTCTTGCAGAGAAGTGGTGCCCTTCAAAGG
TCTATGGCCTGGATATAAACCCAAGAGCTGTGAAGATTGCATGGATAAACCTGTACTTGA
ACGCATTAGATGACGACGGTCTCCCGATCTATGACGGGGAGGGGAAAACATTGCTCGATA
GAGTTGAATTCTATGAATCTGATCTCCTTTCTTACTGTAGAGACAACAAGATAGAGCTCG
ATCGTATTGTTGGATGCATACCACAGATTCTCAACCCAAATCCAGAGGCGATGTCAAAGA
TTGTAACAGAGAATTCAAGTGAGGAGTTCTTGTACGCCTTGAGTAACTACTGTGCTCTTC
AGAATTTTCAGGATGGGGTTAGAAAGATTCCCTTGTTTCTCTCTCACCAAAGCATGGGTC
TAAGGTCCGGCCTTAGTCATGGTCATGACATTCTTACTGGGCCACTATGCCACTGTGTAT
GGGTGAGGTAAGTGTTCGAGGGTTCTCTACAACTGCATTAGAAGGCAATGCTTGGACGTT
GTTTTTATCCCTCGCATGCCAGATTTTTAAATATATTTGGACACTTTACTTTGTAGCTAC
AGCTTTGACTATGTCCATTGAAACAGTTGACCTCAACCAACATGTTAAGTGTTTAGCATG
TTGTTTCTTGAAACGGTATATGCGAAATTTTATTGACAAAGTACTAGCAACAGCAACAAG
CATGGTTTTTAAAGCGGTAAGGCGGTCCAAGGCGTTGGAGCACCGCCCGGACGCCTAGGC
GAGGTAGGCGGGCAAGGCGTCTAGGCGTTAGACCACCGCCCGGACGCCTAGGCGACGCCT
AGGCGACGCCTTAAGAACAGAGGGGTTTTGTCGAGGACCAATTTGGCCTTGGGTTGATTG
CTCGTGCGGTGGAAGAAGGGATATCTGTCATAAAGCCTTCAGGTATTATGGTATTCAACA
TGGGAGGTCGACCAGGACAGGGTGTCTGTGAACGTCTATTTCGACGGCGTGGGTTTCGCA
TTACTAAGCTCTGGCAAACCAAAATTATGCAGGCTGCTGACACAGATATTTCAGCTTTGG
TTGAAATTGAGAAAAACAGCAGACATCGATTCGAGTTCTTCATGGATCTTGTTGGGGATC
AGCCTATCTGTGCTCGCACAGCCTGGGCATACATGAAATCTGGTGGTCACATTTCACATG
CTTTGTCTGTGTATAGCTGTCAACTTCGCCAGCCCAACCAGGTGAAGAAAATATTTGAGT
TTCTTAAAGATGGATTCCATGAAGTCAGCAGTTCCCTTGATTTATCCTTTGACGATGATT
CTGTAGCTGAGGAAAAAATTCCCTTCCTAGCTTACCTTGCTAGTTTTCTGAAAGAGAACA
AGTCAAATCCCTGTGAGCCACCAGCTGGATGTCTAAACTTTAGGAAACTTGTTGCTGGAT
TTATGAAGAGCTACCATCACATTCCTCTAACTCCTGATAATGTCGTTGTGTTCCCTTCTC
GCTCTGTGGCAATAGAGAATGCTCTTCAATTGTTCTCACCGGCGCTTGCAATTGTTGATG
AACATTTAACCAGACACTTGCCCAAGCAATGGTTAACATCTTTAGCAATTGAGGGAAGAG
CAGATTGTAATCACGCCGATGGTACAGTTACTGTAATTGAGGCACCACGCCAATCAGATT
TACTGATTGAGTTGATCAGGAAGCTGCAGCCTCAGGTGGTTGTTACTGGCATGGCTCAAT
TTGAGGCTATCACCAGTGCTGCTTTTGAGAACCTACTAAACGTAACAAAAGATGTTGGCT
CCCGGCTGTTCCTGGATATTTCTGAGCATCTGGAGTTGTCTAGCCTGCCAAGCTCTAATG
GTGTATTGAAATATCTTGCTGGAAAGACATTACCGTCACATGCAGCTATACTGTGTGGTT
TAGTAAAGAATCAGGTGTACTCTGATCTGGAGGTTGCTTTTGCCATTTCCGAAGATGCAG
CTGTATATAAAGCATTATCACAAACTATTGAGCTATTGGAAGGCCACACTTCTCTGATCA
GCCAGCACTATTATGGTTGCCTTTTCCACGAGCTTCTGGCATTTCAGATTGCTGACCGTC
ATCCACAGCAAGAGAGACAACCTGCGGAAGTGATACCTCAGCAGATGATAGGATTTTCTG
ACCCAGCTGTGTCTACCCTAAAGGCTACTGAATTTTTCGTTCCTGGTTCAGCTGAATCCA
GCATTATTCATATGGATTTAGATCGCAGCTTCCTGCCAGTACCTTCAGCAGTGAATGCGT
CTGTTTTTGAAAGTTTTGTCAGGCAGAACATCACTGATTCTGAAACCGATGTCCGTTCCA
GCATCCAACAGCTGGTGAAAGACAGCTATGGTTTATCCGCAGCTGGTTGTGCAGAAATTA
TCTACGGAAACACCTCCGTAGCACTCTTCAACAAGCTCGTCCTTTGTTGCATGCAAGAAC
AGGGCACCTTGCTTTTCCCCTTGGGCACCAATGGCCACTACGTCTCCGCAGCAAAGTTTG
TGAACGCTAGCACCGTGACTATACCGACAAATCCCAGTTCAGGGTTCAGGATCGAGCCCA
AGGTTCTAGCTGACACTCTTAAGAATGTATCTCGGCCGTGGGTGTATGTTTGCGGCCCCA
CGATCAACCCTACTGGCTTTCTGTACAGTGACAGTGACATCCGAGAGCTGCTCTCCGTAT
GCGCTGAATATGGAGCCAGGGTAGTGATAGATACATCCTTCTCTGGCCTGGAGTACGAGA
CCGATGGATGGAGGCAGTGGAATCTGGCAGGATGCCTTTCCTCTTTGAAGCGTTCAGAGC
CATCGTTCTCTGTGGTCCTGCTCGGAGAGCTGTCCTTTGCGCTGACTGCAGGTGGGCATG
ACTTTGGGTTTGTGATATTGGGTGACTCGTCGTTGGCTGAGACGTTCCATAGTTTTTCTA
GCTTGAGTCGACCGCACACCACATTGAAGTACACTTTCAAGAAGCTGCTGGGGCTTAAGA
ACCAGAAGGACCAGCATTTCTCGGATCTGATAGTGGAGCAGAAGGAGGAGCTGAAGAATC
GCGCCAACCAGTTGATACAGACACTGGAGAGCTGTGGCTGGGAAGCTGCCATCGGTTGCG
GTGGCATCTCGATGCTGGCGAAGCCCACCGCGTACATGGGGAAGGCCTTCAAAGCTGCTG
GCTTCGACGGCGAGCTGGACGCGAGCAACATCCGGGAAGCCATCCTGAGGGCCACTGGGC
TGTGCATAAACAGCAGCTCCTGGACGGGGATCCCTGGCTACTGCCGGTTCAGCTTTGCTC
TGGAGAGGGGGGAATTCGAGCGTGCGATGGGATGCATAGCTCGGTTCAAGGAGCTGGTTC
TGGGAGGCGCTCAGATGAATGGTGCCTGATGGAGCAATCCATGTTATACGTAACCTTGGT
GCTGTGTAGTAGCGATGATATTGTTCCAGGTGATGGAGATATCAAGGAATAACAAGAGCC
TACCTGCTGTGAAGTCAATGTACTACTAGGATGGATAGGGCGCTTCGATGCGCCCTTTCT
GTCTTCGAATTGCTGTGCTGTGCACGGAGAATAAACATATACTATTATATATATACATAC
AATTTGCTAAGATATAC