Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011088_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:8:138559252:138560849:-1 gene:Zm00001d011088 gene_biotype:protein_coding transcript_biotype:protein_coding description:WAT1-related protein

Sequence

ATGGCGGCGGGCGCGTTGGAGGCGAAGAAACCCTACCTGATCGCCCTCGCCGTGCAGATC
ATCGGCACCGGCATGTTCGTCATCTCCAAGGCAGCCTTCGACGACGGCATGAGCACCTTC
GTCTTCATCTTCTACAGGATGGCCCTCGCCTCGCTCATCCTCGTGCCCACAGCCATTGTG
CAGCAGAGGAAGAATCTGCGGCCCATCATGTCTGATCCCAGGCTGCTTCTCAAGCTCTTC
TTCCTTGCCTTGATCGGGAACACTTTCAGCTTGAACACGTACAACCTGACCCTGAAGCTG
ACGTCTGCGACGGTGGGGTCCGCGCTGGCCAACTCCGTGCCCGTCTTCACCTTCTGCCTG
GTGCTGCTGCTGCGGATGGAGGCGGCGAACCTGAGGACGGTCGCCGGCGTGGCCAAGGCC
GCCGGAGTCGCGCTCTGCGTCGCCGGAGTGCTCGTCCTCGCCCTGTACGCCGGGCCGGCG
ATGAGCCCCGTCAACCACCACCGCGCCTTCGCCGCCGCCGCCCCGCCGCGTGCCTCCACC
AGCAGCAGCAGGATGACGTGGATCACAGGGACGCTGCTCATGGTGCTCGCCAACGTCACG
TGGGCGCTCTGGATCGTCCTGCAGTCGGCATTGCTCAAGGAGTACCCCAACAGGATGCTT
GTGACGGCGACCCAGTGCGTGTTCAGCATGCTGCAGTCGTTCGTCGTGGCCGTGGTGGCA
GAGAGGGGTGACTTGTCCAAGTGGAGGCTCCGCTGTGACATTACCCTCGTAGCCGTCCTT
TACGTGGGTTTCGTGGTGACGGGACTGTCCCATTATCTCCAAGCGTGGTGCATGGAGCTG
AAAGGCCCGGTGTTCCTGGCGATGACGAACCCGCTCTGCTTCGTCTTCACCATATTCAGC
TCCTCCTTCTTTCTGGGAGAGATCGTGCACCTTGGCAGCGTTCTGGGTGGAGCTCTGCTT
GTTGCCGGCCTTTACAGCGTGCACTGGGGAAAGCTCAAGGAAGAAGACATGGCATCTGAT
CAGGAAAAGACCAACAAGCAGGAAGAAGAAGCAGCAGCAGCAGGGGCATCCTCAGCGCTC
CAACAACCGTGA

Peptide Sequence

PEP ID

Zm00001d011088_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:8:138559252:138560849:-1 gene:Zm00001d011088 transcript:Zm00001d011088_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:WAT1-related protein

Sequence

MAAGALEAKKPYLIALAVQIIGTGMFVISKAAFDDGMSTFVFIFYRMALASLILVPTAIV
QQRKNLRPIMSDPRLLLKLFFLALIGNTFSLNTYNLTLKLTSATVGSALANSVPVFTFCL
VLLLRMEAANLRTVAGVAKAAGVALCVAGVLVLALYAGPAMSPVNHHRAFAAAAPPRAST
SSSRMTWITGTLLMVLANVTWALWIVLQSALLKEYPNRMLVTATQCVFSMLQSFVVAVVA
ERGDLSKWRLRCDITLVAVLYVGFVVTGLSHYLQAWCMELKGPVFLAMTNPLCFVFTIFS
SSFFLGEIVHLGSVLGGALLVAGLYSVHWGKLKEEDMASDQEKTNKQEEEAAAAGASSAL
QQP

Transcript Sequence

Transcript ID

Zm00001d011088_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:138559252:138560849:-1 gene:Zm00001d011088 gene_biotype:protein_coding transcript_biotype:protein_coding description:WAT1-related protein

Sequence

CATATAGCTAGGTTATTTGCAGCTAGCTAGCTACGCACACGTACGTCCGATCGATCCGTT
GTTCGTTGGGAATCCAATCAAATCATTAATTGCAGACTAAACTAAACTAAACTAGAACCA
TGGCGGCGGGCGCGTTGGAGGCGAAGAAACCCTACCTGATCGCCCTCGCCGTGCAGATCA
TCGGCACCGGCATGTTCGTCATCTCCAAGGCAGCCTTCGACGACGGCATGAGCACCTTCG
TCTTCATCTTCTACAGGATGGCCCTCGCCTCGCTCATCCTCGTGCCCACAGCCATTGTGC
AGCAGAGGAAGAATCTGCGGCCCATCATGTCTGATCCCAGGCTGCTTCTCAAGCTCTTCT
TCCTTGCCTTGATCGGGAACACTTTCAGCTTGAACACGTACAACCTGACCCTGAAGCTGA
CGTCTGCGACGGTGGGGTCCGCGCTGGCCAACTCCGTGCCCGTCTTCACCTTCTGCCTGG
TGCTGCTGCTGCGGATGGAGGCGGCGAACCTGAGGACGGTCGCCGGCGTGGCCAAGGCCG
CCGGAGTCGCGCTCTGCGTCGCCGGAGTGCTCGTCCTCGCCCTGTACGCCGGGCCGGCGA
TGAGCCCCGTCAACCACCACCGCGCCTTCGCCGCCGCCGCCCCGCCGCGTGCCTCCACCA
GCAGCAGCAGGATGACGTGGATCACAGGGACGCTGCTCATGGTGCTCGCCAACGTCACGT
GGGCGCTCTGGATCGTCCTGCAGTCGGCATTGCTCAAGGAGTACCCCAACAGGATGCTTG
TGACGGCGACCCAGTGCGTGTTCAGCATGCTGCAGTCGTTCGTCGTGGCCGTGGTGGCAG
AGAGGGGTGACTTGTCCAAGTGGAGGCTCCGCTGTGACATTACCCTCGTAGCCGTCCTTT
ACGTGGGTTTCGTGGTGACGGGACTGTCCCATTATCTCCAAGCGTGGTGCATGGAGCTGA
AAGGCCCGGTGTTCCTGGCGATGACGAACCCGCTCTGCTTCGTCTTCACCATATTCAGCT
CCTCCTTCTTTCTGGGAGAGATCGTGCACCTTGGCAGCGTTCTGGGTGGAGCTCTGCTTG
TTGCCGGCCTTTACAGCGTGCACTGGGGAAAGCTCAAGGAAGAAGACATGGCATCTGATC
AGGAAAAGACCAACAAGCAGGAAGAAGAAGCAGCAGCAGCAGGGGCATCCTCAGCGCTCC
AACAACCGTGACAAGCTAGGGCATTGCATCATTCAACTGATGCATGCTCAACTCACCTCG
GCGATCCAACACTCTACTACTCTGTTGTATCCGAACGAATAAATATATATGTCAACTTAT
ATTAACTCTGAAGTTGCATTAATAAATTCTAATGTCTTCTCCATACAAG