Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011078_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:8:138325209:138331960:1 gene:Zm00001d011078 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pumilio homolog 3
Sequence

ATGGTCACGGAGATGGCGGCGCGCGGCGGCGAGGCGGCGGCGTTTGGCGCGGAGACCGAC
CGCGGCGACTTCGAGGTGTTTCGCAGTGGCTCCGCGCCGCCCACTGTCGAGGGAGCCCTG
GGCGCCGCCGGGGCCGACGGCGGCCTTCTCGTGGACGACGACCTCCGCGCCGACCCGGCG
TACCAGAGCTACTACTACTCCAGTGCGCACCTCAACCCGCGCCTCCCACCGCCGCTCCTG
TCCAAGGAGGACTGGCGGTCCTCGCACCACCGCCTCCGCTCCGCGGGCTTCGGCGGGATC
GGGGACGGCAGGAGGCAGCAGCAGCAGGCGTCGGCTGCCGAGGGGACTGTCGGCCTGCCC
GGGATCGATCTTGGTCGCCAGAGGAGCTTCTCCACCATCTTTCAGGAAGACTCGTACCAG
CGTGATATGGATAGGCATACTGCCAGCCACAATAGTAATGACTTACTAGGTTCTTCTGGA
ATACAGTATGGTCTAAATCGTGGATCTGGAACTATTGGAGGCCTGCACTCTAGCAATAGT
CTACGGAGCTTGGATGAAATTCAGAACAATGATCTGCCATCAAACACATTTGCTTCTATT
TTAGGGTCATCTCTTTCTAGGAGTGCATCTCCAGACCCTGAACTTGTGAGGAGGGCCCCT
AGTCCATCCCTGCCTCCAATTGGTGTGAAAGTTGGTAACACTGATAAGAAGATCAATGGT
GGTTCCACTTCTTTCCGTCGTAGCTCATCCGCAATCGGAGAATCTGATGATTTGGTGGCT
GCTTTATCTGGGATGAACTTATCATCTAGGGCAATGAGTGGGCAAACTATGGACCAGTCT
CAGCTCTATCAGGATGTCGATAATGTCCAGAAGTTCCTTTTTGATCGACAGGGTGACCAA
ACAACTGGAAATCAGCAGCACTATATGAGACGTCCTGAACAAGGACAATCTAAGTTACCC
GATGGATATTCTGCCAATTTGGCCAATTCATCTACAATGAGAAACCAGATTAATGCTGGC
AGTTTCACATCTTTTGACAGTTTGTCTCTTGGATCTGGGTTTGCTTCCCCTAGGATTGGT
TCTAGATCCCCTGGAGGGACTGTATCTTCTCGACAAAATTTAGCTGGTATGTCTAACATG
CTAAACTATAATGGAATTGGAAGTCCAACTGCCTCACCTTCTCTTCAGACTTCTATTGAT
CCGGCATATATCCAGTACCTTGCTCAGCTTGCAGCTACCTGTGATGATCCTCTAATGGAC
AGGGGCCATCTAGGAAATTCTTACATGGACTTACTTGGTACTCATAAAGCTAACATTGGC
CCTTTACTCCAGTCTCAAAAACAATATGGTTACTATGGCAATCTTGGATTTAACCTTGGT
TATCCTGGAAGTCCATTGGCGAGTCCTGTTCTTCCCTCTTCACCTATTGCGCCAGGCAGT
CCACTTAGGCATGGTGAGCGCAACATGCGCTTTCCATCAGGCATGAGAAACTTCGGTAAT
TCCTTTGGTTCATGGAATTCAGGCATGGGTGGAAAGATGGATGCCAATTTGATGCCCTCA
CTTCTGGAGGAATTCAAGAGCAACAAAAGTAAATCATATGAGCTCTCCGAAATAGCTGGC
CATGTTGTTGAGTTTAGTGCCGATCAATATGGGAGCCGGTTTATACAACAGAAGCTAGAA
ACAGCCAGTACTGAAGAAAAGGACATGGTTTTTTCAGAAATCATGCCTCAAGCTCTCACA
TTGATGACTGATGTATTTGGAAATTATGTTGTCCAAAAGTTTTTTGAGCATGGAAGCACT
GCCCAGATAAAGGAATTGGCCGGTCAGCTTATTGGACGTGTCCTTGCTCTTAGTCTTCAG
ATGTATGGGTGCCGGGTTATACAGAAGGCTATAGAAGTTGTTGATTTGGAGCTGCAGACT
AAAATGGTTGCGGAGCTGGAGGGCCATGTCATGCGCTGTGTGCGTGATCAAAATGGGAAC
CATGTTATACAGAAATGTATAGAGTGCATTCCTCAGCATGCTATTGAGTTTATTATCTCG
ACATTCTATGGCCAAGTTGTAATGCTATCCACTCATCCATATGGTTGTCGAGTTATTCAG
AGGGTTCTAGAGCATTGTGATGATCCTAAAACACAGCAAATAATGATGGATGAGATTCTC
CAGTCTGTTTGCTTGCTGGCTCAGGACCAGTATGGCAACTATGTTGTTCAGCATGTTCTG
GAACATGGCAAACCCCATGAGAGATCAGCTATTATTGAGAAGCTAATTGGCCAAATTGTG
CAAATGAGCCAGCAAAAATTTGCCTCAAATGTCATCGAGAAGTGCTTAGTCTTTGGAAAT
CCTGTAGAACGTCAGGTTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCT
CTTGAGGTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCAGAAGGTGTTAGAAACT
TGTGACGATCAGCAGAGAGAGATGATCCTAACAAGGATAAAGACACACCTGAACACACTC
AAGAAGTACACATATGGGAAGCACATAGTAGCACGCGTAGAGAAGCTTGTTGCTGCTGGA
GGTATCTTCATTCACTTATGTCTCCAGGACTTGACATTATCTGTGTATCATGTTGGTCTA
GGGACTAATAATGATGTATATGTTGTCGTGCCCACAGAGAAGCGCCTTGGGCTTCAACCA
GCATGCACCGCCGCCTGA

Peptide Sequence

PEP ID

Zm00001d011078_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:8:138325209:138331960:1 gene:Zm00001d011078 transcript:Zm00001d011078_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pumilio homolog 3
Sequence

MVTEMAARGGEAAAFGAETDRGDFEVFRSGSAPPTVEGALGAAGADGGLLVDDDLRADPA
YQSYYYSSAHLNPRLPPPLLSKEDWRSSHHRLRSAGFGGIGDGRRQQQQASAAEGTVGLP
GIDLGRQRSFSTIFQEDSYQRDMDRHTASHNSNDLLGSSGIQYGLNRGSGTIGGLHSSNS
LRSLDEIQNNDLPSNTFASILGSSLSRSASPDPELVRRAPSPSLPPIGVKVGNTDKKING
GSTSFRRSSSAIGESDDLVAALSGMNLSSRAMSGQTMDQSQLYQDVDNVQKFLFDRQGDQ
TTGNQQHYMRRPEQGQSKLPDGYSANLANSSTMRNQINAGSFTSFDSLSLGSGFASPRIG
SRSPGGTVSSRQNLAGMSNMLNYNGIGSPTASPSLQTSIDPAYIQYLAQLAATCDDPLMD
RGHLGNSYMDLLGTHKANIGPLLQSQKQYGYYGNLGFNLGYPGSPLASPVLPSSPIAPGS
PLRHGERNMRFPSGMRNFGNSFGSWNSGMGGKMDANLMPSLLEEFKSNKSKSYELSEIAG
HVVEFSADQYGSRFIQQKLETASTEEKDMVFSEIMPQALTLMTDVFGNYVVQKFFEHGST
AQIKELAGQLIGRVLALSLQMYGCRVIQKAIEVVDLELQTKMVAELEGHVMRCVRDQNGN
HVIQKCIECIPQHAIEFIISTFYGQVVMLSTHPYGCRVIQRVLEHCDDPKTQQIMMDEIL
QSVCLLAQDQYGNYVVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVIEKCLVFGN
PVERQVLIGEMLGSTSESEPLEVMMKDQFGNYVVQKVLETCDDQQREMILTRIKTHLNTL
KKYTYGKHIVARVEKLVAAGGIFIHLCLQDLTLSVYHVGLGTNNDVYVVVPTEKRLGLQP
ACTAA

Transcript Sequence

Transcript ID

Zm00001d011078_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:138325209:138331960:1 gene:Zm00001d011078 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pumilio homolog 3
Sequence

CCTCTCCGGTCTATTCTCTACTCTTCTTCCCCAGTCCTCCCTACTCAGTACTTACCTCAG
CACGCCACTGCTCGAAGGCGGAGCGCCTCCAAAATCCATCCCAATCCCAAATCCTCTGAA
TTCGGACGCCGCTCGCCCCACGCAGATGGATGCCCGCCCCTCGATTCGCCCGCGCTGAGC
ATCCGAACCCGGTTCCCGCCGCCTCGGCTCATTCCGGCGCTGAAAGATTCAGCTCCGCGC
TTCCGGCCGCCGGAGCTCGGTAATGGCGGGGTTCTAGCGCGGCGGACTTAAAGATCTAGC
CTCCTCTTTTCCTTTCCATTTTCTCTCTTTCGCTGCTACCCCCTCACACCCCCACGGCGA
TGGTCACGGAGATGGCGGCGCGCGGCGGCGAGGCGGCGGCGTTTGGCGCGGAGACCGACC
GCGGCGACTTCGAGGTGTTTCGCAGTGGCTCCGCGCCGCCCACTGTCGAGGGAGCCCTGG
GCGCCGCCGGGGCCGACGGCGGCCTTCTCGTGGACGACGACCTCCGCGCCGACCCGGCGT
ACCAGAGCTACTACTACTCCAGTGCGCACCTCAACCCGCGCCTCCCACCGCCGCTCCTGT
CCAAGGAGGACTGGCGGTCCTCGCACCACCGCCTCCGCTCCGCGGGCTTCGGCGGGATCG
GGGACGGCAGGAGGCAGCAGCAGCAGGCGTCGGCTGCCGAGGGGACTGTCGGCCTGCCCG
GGATCGATCTTGGTCGCCAGAGGAGCTTCTCCACCATCTTTCAGGAAGACTCGTACCAGC
GTGATATGGATAGGCATACTGCCAGCCACAATAGTAATGACTTACTAGGTTCTTCTGGAA
TACAGTATGGTCTAAATCGTGGATCTGGAACTATTGGAGGCCTGCACTCTAGCAATAGTC
TACGGAGCTTGGATGAAATTCAGAACAATGATCTGCCATCAAACACATTTGCTTCTATTT
TAGGGTCATCTCTTTCTAGGAGTGCATCTCCAGACCCTGAACTTGTGAGGAGGGCCCCTA
GTCCATCCCTGCCTCCAATTGGTGTGAAAGTTGGTAACACTGATAAGAAGATCAATGGTG
GTTCCACTTCTTTCCGTCGTAGCTCATCCGCAATCGGAGAATCTGATGATTTGGTGGCTG
CTTTATCTGGGATGAACTTATCATCTAGGGCAATGAGTGGGCAAACTATGGACCAGTCTC
AGCTCTATCAGGATGTCGATAATGTCCAGAAGTTCCTTTTTGATCGACAGGGTGACCAAA
CAACTGGAAATCAGCAGCACTATATGAGACGTCCTGAACAAGGACAATCTAAGTTACCCG
ATGGATATTCTGCCAATTTGGCCAATTCATCTACAATGAGAAACCAGATTAATGCTGGCA
GTTTCACATCTTTTGACAGTTTGTCTCTTGGATCTGGGTTTGCTTCCCCTAGGATTGGTT
CTAGATCCCCTGGAGGGACTGTATCTTCTCGACAAAATTTAGCTGGTATGTCTAACATGC
TAAACTATAATGGAATTGGAAGTCCAACTGCCTCACCTTCTCTTCAGACTTCTATTGATC
CGGCATATATCCAGTACCTTGCTCAGCTTGCAGCTACCTGTGATGATCCTCTAATGGACA
GGGGCCATCTAGGAAATTCTTACATGGACTTACTTGGTACTCATAAAGCTAACATTGGCC
CTTTACTCCAGTCTCAAAAACAATATGGTTACTATGGCAATCTTGGATTTAACCTTGGTT
ATCCTGGAAGTCCATTGGCGAGTCCTGTTCTTCCCTCTTCACCTATTGCGCCAGGCAGTC
CACTTAGGCATGGTGAGCGCAACATGCGCTTTCCATCAGGCATGAGAAACTTCGGTAATT
CCTTTGGTTCATGGAATTCAGGCATGGGTGGAAAGATGGATGCCAATTTGATGCCCTCAC
TTCTGGAGGAATTCAAGAGCAACAAAAGTAAATCATATGAGCTCTCCGAAATAGCTGGCC
ATGTTGTTGAGTTTAGTGCCGATCAATATGGGAGCCGGTTTATACAACAGAAGCTAGAAA
CAGCCAGTACTGAAGAAAAGGACATGGTTTTTTCAGAAATCATGCCTCAAGCTCTCACAT
TGATGACTGATGTATTTGGAAATTATGTTGTCCAAAAGTTTTTTGAGCATGGAAGCACTG
CCCAGATAAAGGAATTGGCCGGTCAGCTTATTGGACGTGTCCTTGCTCTTAGTCTTCAGA
TGTATGGGTGCCGGGTTATACAGAAGGCTATAGAAGTTGTTGATTTGGAGCTGCAGACTA
AAATGGTTGCGGAGCTGGAGGGCCATGTCATGCGCTGTGTGCGTGATCAAAATGGGAACC
ATGTTATACAGAAATGTATAGAGTGCATTCCTCAGCATGCTATTGAGTTTATTATCTCGA
CATTCTATGGCCAAGTTGTAATGCTATCCACTCATCCATATGGTTGTCGAGTTATTCAGA
GGGTTCTAGAGCATTGTGATGATCCTAAAACACAGCAAATAATGATGGATGAGATTCTCC
AGTCTGTTTGCTTGCTGGCTCAGGACCAGTATGGCAACTATGTTGTTCAGCATGTTCTGG
AACATGGCAAACCCCATGAGAGATCAGCTATTATTGAGAAGCTAATTGGCCAAATTGTGC
AAATGAGCCAGCAAAAATTTGCCTCAAATGTCATCGAGAAGTGCTTAGTCTTTGGAAATC
CTGTAGAACGTCAGGTTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTC
TTGAGGTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCAGAAGGTGTTAGAAACTT
GTGACGATCAGCAGAGAGAGATGATCCTAACAAGGATAAAGACACACCTGAACACACTCA
AGAAGTACACATATGGGAAGCACATAGTAGCACGCGTAGAGAAGCTTGTTGCTGCTGGAG
GTATCTTCATTCACTTATGTCTCCAGGACTTGACATTATCTGTGTATCATGTTGGTCTAG
GGACTAATAATGATGTATATGTTGTCGTGCCCACAGAGAAGCGCCTTGGGCTTCAACCAG
CATGCACCGCCGCCTGA