Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d011060_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:8:137865331:137867859:1 gene:Zm00001d011060 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase XBAT31
Sequence

ATGGGGCACGGCGTCAGCTGCGCTCGCACGGGCGACGAGCACAACTACTTCCGCGCGGCG
CAGGTCGGGGACCTCGACGCCCTGGACGCGCTCCTCGCCGCCGACCCCTCCCTCGCCCGC
CGCGCCACGCTCTACGACCGCCTCTCCGCGCTGCACATCACCGCCGCGAATGGCCACCTC
GAGGTGATGTCCATGATCTTGGATCACGGGGTGCCGCCGGACGCCGTGAACCGGCACAAG
CAGACGCCGCTGATGCTCGCGGCGATGCACGGCAAGATCGACTGCGCGCGGAAGCTCCTG
GAGGCCGGCGCCAATATCCTGATGTTCGACTCCCTGCACGGGCGGACCTGCCTGCACCAC
GCGTCCTACTTCGGCCACGTCGACTGCCTGCGGGCCATCCTCGCGGCGGCGCGGACCACG
CCGGTGGCCGACTCATGGGGTTTCGCCCGGTTCGTCAACGTCAGGGACGACCGCGGCGCC
ACGCCGCTGCACCTCGCCGCCAGGCAGGGCCGCTCCGCCTGCGTGCAGGTGCTGCTGGAG
AACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGGGTTCCCCGGCAGCACGTCGCTG
CATCTGGCCGCTCGAAGCGGGAACCTGGACTGCATCCGGAAACTGCTCGCCTGGGGCGCG
GATCGTCTCCAGAGGGACTCAGCAGGGAGGATTCCTTACGCCGTGGCGCTGAAGCGCAAC
CACGCGGCGTGCGCGGCGCTGCTGAACCCGTCGGCGGCGGAGCCCATGGTGTGGCCTTCC
CCGCTCAAGTTCATCAGCGAGCTGGACCCGGAGGCGAAGGCTCTCCTGGAAGCGGCACTG
ATGGACGCCAATAGGGAGAGGGAGGAGAAGATCCTCAAGGGCATCACCAAGTATTCGCAG
CCATCGCCTACTTCGCCTTGCGAGCACGATGCCATTGACGAAGCGTCCTTGGAGGCCAGC
GACGGGGAGCTGTGCTGCATCTGCTTCGAGCAGGCGTGCAGCATCGAGGTGCAGGACTGC
GGGCACCAGATGTGCGCGGCGTGCACACTGGCGCTGTGCTGCCACAGCAAGCCGAACCCG
GCGACGCTGACGCCGCCGTCGCCGGCCTGCCCGTTCTGCCGCGGCAGCATCTCGAGGCTG
CTGGTGGCCCGGGCGAGCCCCGACGCCGATGACGACGACAAGGCCGCCGCCGCCTCGTCC
CCGCAGCTCGTCCGGCGGCGGTCGCACAACCTCAGATGGGCGGCGGCGACGGCGTGGACA
AGCCCGAGCACGACCTGTGATCGGCATTTGATGCTGTGCGTGGCTGAGCAGACAGCAGAG
CACGACCATTTTAAAAGCTGA

Peptide Sequence

PEP ID

Zm00001d011060_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:8:137865331:137867859:1 gene:Zm00001d011060 transcript:Zm00001d011060_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase XBAT31
Sequence

MGHGVSCARTGDEHNYFRAAQVGDLDALDALLAADPSLARRATLYDRLSALHITAANGHL
EVMSMILDHGVPPDAVNRHKQTPLMLAAMHGKIDCARKLLEAGANILMFDSLHGRTCLHH
ASYFGHVDCLRAILAAARTTPVADSWGFARFVNVRDDRGATPLHLAARQGRSACVQVLLE
NGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYAVALKRN
HAACAALLNPSAAEPMVWPSPLKFISELDPEAKALLEAALMDANREREEKILKGITKYSQ
PSPTSPCEHDAIDEASLEASDGELCCICFEQACSIEVQDCGHQMCAACTLALCCHSKPNP
ATLTPPSPACPFCRGSISRLLVARASPDADDDDKAAAASSPQLVRRRSHNLRWAAATAWT
SPSTTCDRHLMLCVAEQTAEHDHFKS

Transcript Sequence

Transcript ID

Zm00001d011060_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:137865331:137867859:1 gene:Zm00001d011060 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase XBAT31
Sequence

ATTCCACGCTGCCTCGGCCGGCACCTACCTCCCCCACTTCGCCGCCGGCGGGTGGAGTCG
GGCCGGAGCAGCCGCTAGCTCGCCTCTGTTACCCCAAAAAAGACAAAAAAAAATAAAGAG
AGAGTACCAAGCAAGCCGCCGGCAGCTCGGGCAGCCATGGGGCACGGCGTCAGCTGCGCT
CGCACGGGCGACGAGCACAACTACTTCCGCGCGGCGCAGGTCGGGGACCTCGACGCCCTG
GACGCGCTCCTCGCCGCCGACCCCTCCCTCGCCCGCCGCGCCACGCTCTACGACCGCCTC
TCCGCGCTGCACATCACCGCCGCGAATGGCCACCTCGAGGTGATGTCCATGATCTTGGAT
CACGGGGTGCCGCCGGACGCCGTGAACCGGCACAAGCAGACGCCGCTGATGCTCGCGGCG
ATGCACGGCAAGATCGACTGCGCGCGGAAGCTCCTGGAGGCCGGCGCCAATATCCTGATG
TTCGACTCCCTGCACGGGCGGACCTGCCTGCACCACGCGTCCTACTTCGGCCACGTCGAC
TGCCTGCGGGCCATCCTCGCGGCGGCGCGGACCACGCCGGTGGCCGACTCATGGGGTTTC
GCCCGGTTCGTCAACGTCAGGGACGACCGCGGCGCCACGCCGCTGCACCTCGCCGCCAGG
CAGGGCCGCTCCGCCTGCGTGCAGGTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTC
ACCGGCTCCTACGGGTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAAC
CTGGACTGCATCCGGAAACTGCTCGCCTGGGGCGCGGATCGTCTCCAGAGGGACTCAGCA
GGGAGGATTCCTTACGCCGTGGCGCTGAAGCGCAACCACGCGGCGTGCGCGGCGCTGCTG
AACCCGTCGGCGGCGGAGCCCATGGTGTGGCCTTCCCCGCTCAAGTTCATCAGCGAGCTG
GACCCGGAGGCGAAGGCTCTCCTGGAAGCGGCACTGATGGACGCCAATAGGGAGAGGGAG
GAGAAGATCCTCAAGGGCATCACCAAGTATTCGCAGCCATCGCCTACTTCGCCTTGCGAG
CACGATGCCATTGACGAAGCGTCCTTGGAGGCCAGCGACGGGGAGCTGTGCTGCATCTGC
TTCGAGCAGGCGTGCAGCATCGAGGTGCAGGACTGCGGGCACCAGATGTGCGCGGCGTGC
ACACTGGCGCTGTGCTGCCACAGCAAGCCGAACCCGGCGACGCTGACGCCGCCGTCGCCG
GCCTGCCCGTTCTGCCGCGGCAGCATCTCGAGGCTGCTGGTGGCCCGGGCGAGCCCCGAC
GCCGATGACGACGACAAGGCCGCCGCCGCCTCGTCCCCGCAGCTCGTCCGGCGGCGGTCG
CACAACCTCAGATGGGCGGCGGCGACGGCGTGGACAAGCCCGAGCACGACCTGTGATCGG
CATTTGATGCTGTGCGTGGCTGAGCAGACAGCAGAGCACGACCATTTTAAAAGCTGAAGC
AGGCATTGCCACTGGCTTTCCAAGATGAGAGACATCACATCCAAGCGTGATTATCTACTG
GAGTACTTGTAATGCATCCTCTTCTTCTCCCCCATGTCTGGTCTATTTTTGGGCGTGCTA
GGATGGACCTGGCCGGCGCGATATGGTTGAGCTGAGCTTGAGCCACCGACATGTGTGTAA
AACTGTCGGTCGAGAGAACACGCAGAGTGGAACCGGCGATGTGCACTGGACTTGTGATCT
GGACTCTGAAGGAGGCATTGCATGTTGTAGGACAGCACAGC