Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d011013_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:8:136856323:136861244:1 gene:Zm00001d011013 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium pump1 description:Calcium pump1
Sequence	ATGGGCGAGGCAGTGCCCGACCCCGACGACCTGGCCGCGTTCCCGGCGTGGGCGCGGTCG GTGGCGGACTGCGAGGCGCGGCTCGGGGTGAGCGTCACGCGCGGCCTCTCGTCCGCCGAG GCCGCCGCGCGGCTGCGCGCCCACGGACCCAACGAGCTGGCCGACCACCCGGCCCCGTCG CTGCTGCGCCTGCTGCTGGACCAGTTCGAGGACACGCTGGTGCGCGTCCTGCTCGCCGCC GCCGCCGTCTCCTTCCTCCTCGCGCTCTCCTCCAGCGCCGGCGCGCTCACGCTCGCCGCC TTCGTCGAGCCGCTCGTCATCTTCCTCATCCTCGTCGTCAACGCCGCCGTCGGGGTCTGG CAGGAGGCCAACGCGGAGCGGGCGCTGGACGCGCTGCGGGAGATCCAGTCCCACCACGCC GCCGTCCTGCGCGACGCCGCATGGCTCCCCGCGCTCCCGGCCCGGGACCTCGTCCCGGGC GACGTCGTCCAGCTCCGCGTCGGGGACAAGGTGCCCGCCGACATGCGCGTCGCCAGCCTC CTCACCTCCACGCTCCGCCTCGAGCAGGGCTCGCTCACGGGGGAGACGGCCTCCGTCAAC AAGACCTCCCGCGCGCTCCCGCTCGAGGACGCCGACATCCAGGCCAAGGACTGCATGGTC TTCGCCGGCACCACCGTCGTCAACGGCGCCGCGCTCTGCATCGTCGCGCGCACCGGGATG GACACGGAGATCGGCGCCATCCACGCCCAGATCCACCAGGCCTCGCAGGAGGACGACGAC ACGCCGCTCAAGAAGAAGCTCAACGAGTTCGGGGAGGCGCTCACCAAGATCATCGGCCTC ATCTGCGCCCTCGTCTGGCTCATCAACGTCAAGTACTTCCTCACCTTCGACCTCCAGGGA GGATGGGTGCCCAGGAACATCACCTTCTCCTTCGAGAAGTGCACCTACTACTTTGAGATC GCCGTCGCGCTCGCCGTCGCCGCCATACCCGAGGGCCTGCCCGCCGTCATCACCACCTGC CTCGCGCTCGGGACCAGGAAGATGGCTGCCAAGAATGCGCTCGTCAGGAAGCTGCCTAGC GTCGAGACCCTCGGCTGCACCACCGTCATCTGCTCCGACAAGACCGGCACGCTCACCACC AACAAGATGTCCGTCGCCAAGCTCGTGGCCGTCGGCGATTCCTCGCAGGAGGTTAGGACC TTCAAGGTGGACGGTACGACTTACGATCCCCGGGACGGGAAAATTCACGACTGGCCTGCT GGGAGCATTGACGCCAACCTTGAGACGATCGCCAAGGTCGCAGCTGTGTGCAATGATGCC AATGTGGCACATTCTTCGCATCAGTATGTTGCCACTGGAATGCCGACAGAGGCAGCTCTT AAGGTTTTGGTTGAGAAAATGGGTCTGCCTGGAGGAAAGAATGGTCTGTCCTTGGATCCG TCTGAGATACTAGGCTGCTGCGCATGGTGGAACAATGTTGCCAAAAGGATTGCTACCCTC GAGTTTGATCGCACAAGGAAATCAATGGGCGTCATTGTGAAAACAAGTTCAGGAAGCAAT GCCCTGCTCGTGAAGGGAGCTGTTGAAACTTTGCTTGAGCGAAGTAGCCACATTCAGCTG AAGGATGGTTCCGTGGTGCCATTAGATGAGAAAGCAAAGAGAACTATCCTGGCAAGCCTC CATGAGATGTCGACCAATGCTCTGCGCTGCCTCGGTTTTGCATACAAGGAGGCGCTAGCA GAATTTGCAACATATGATGGCGAGAACCATCCTGCTCATAAGCTCTTGCTGGATCCGGCC AATTATGCAGCTATTGAGACTGACCTAATATTTGCGGGTCTTGTAGGCCTAAGGGACCCA CCCCGGGAAGAGGTCTATGATGCTATTGAAGATTGCAGAGCTGCTGGCATCCGAGTTATG GTGATAACAGGGGACAACAAAGAAACCGCTGAGGCAATATGCCGTGAAATCGGCGTGTTT TCACCTGACGAGGATATCACCTTCAAGAGCCTTACAGGGAAGGAGTTCATGGCGCTGGAG GACAAGAAGACGCTGCTACGCAGGAAAGGTGGCCTCCTGTTCTCTAGGGCGGAACCTAGG CACAAACAAGAGATTGTGAGGTTGCTGAAGGAAGATGGGGAAGTTGTCGCCATGACTGGA GATGGAGTCAATGATGCCCCTGCTTTGAAGCTGGCTGACATCGGTGTAGCTATGGGCATT ACTGGAACTGAGGTTGCCAAAGAGGCGTCTGACATGGTGTTGGCTGACGACAATTTTAGC ACCATAGTTTCTGCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATA AGATACATGATTTCGTCAAACATTGGTGAAGTCGCTTCTATATTCCTAACTTCCGCCCTG GGCATTCCTGAGGGTTTGATTCCCGTCCAACTTCTATGGGTCAATCTCGTCACCGACGGG CCCCCCGCAACTGCTCTAGGTTTCAATCCGCCTGACAAGGACATCATGAAGAAGCCACCT AGGAGGAGCGACGACTCACTGATCACTCCCTGGATCTTGTTCCGCTACCTGGTGATTGGC CTTTACGTTGGGATGGCGACCGTTGGCATCTTCGTCATATGGTACACACATGGGTCTTTC ATGGGCATTGACCTGACCGGAGACGGCCACACTCTGGTCACCTACTCGCAGCTTTCGAAC TGGGGCCAGTGCTCTTCCTGGGACAACTTCACGGCCTCGCCTTTCACCGCCGGAGCCAGA ACGTTCGCGTTCGACGACGACCCGTGCGACTACTTCCACGCAGGCAAGGTGAAGGCGACG ACGCTGTCCCTGTCCGTGCTGGTGGCCATCGAGATGTTCAACTCGCTGAACGCCCTCTCC GAGGACAGCAGCCTGTTGGCCATGCCGCCCTGGGTCAACCCGTGGCTGCTCGTCGCCATG TCGGTCTCGTTCGGCCTCCACTTCCTCATCCTCTACGTGCCGCTGCTCGCCACGGTGTTC GGCATCGTCCCGCTCAGCCTCAACGAGTGGCTGCTGGTCCTGCTGGTGGCTCTCCCGGTG GTGCTCATCGACGAGGCTCTCAAGCTCGCGGGCAGGTGTACGAGCCCTTCTTCGGGCCCC ACCAGGCGGTCCAGGAAGAAGAAGCAGAAGGGCGAGTAG

Peptide Sequence

PEP ID	Zm00001d011013_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:8:136856323:136861244:1 gene:Zm00001d011013 transcript:Zm00001d011013_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium pump1 description:Calcium pump1
Sequence	MGEAVPDPDDLAAFPAWARSVADCEARLGVSVTRGLSSAEAAARLRAHGPNELADHPAPS LLRLLLDQFEDTLVRVLLAAAAVSFLLALSSSAGALTLAAFVEPLVIFLILVVNAAVGVW QEANAERALDALREIQSHHAAVLRDAAWLPALPARDLVPGDVVQLRVGDKVPADMRVASL LTSTLRLEQGSLTGETASVNKTSRALPLEDADIQAKDCMVFAGTTVVNGAALCIVARTGM DTEIGAIHAQIHQASQEDDDTPLKKKLNEFGEALTKIIGLICALVWLINVKYFLTFDLQG GWVPRNITFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAAKNALVRKLPS VETLGCTTVICSDKTGTLTTNKMSVAKLVAVGDSSQEVRTFKVDGTTYDPRDGKIHDWPA GSIDANLETIAKVAAVCNDANVAHSSHQYVATGMPTEAALKVLVEKMGLPGGKNGLSLDP SEILGCCAWWNNVAKRIATLEFDRTRKSMGVIVKTSSGSNALLVKGAVETLLERSSHIQL KDGSVVPLDEKAKRTILASLHEMSTNALRCLGFAYKEALAEFATYDGENHPAHKLLLDPA NYAAIETDLIFAGLVGLRDPPREEVYDAIEDCRAAGIRVMVITGDNKETAEAICREIGVF SPDEDITFKSLTGKEFMALEDKKTLLRRKGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTG DGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFSTIVSAVGEGRSIYNNMKAFI RYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP RRSDDSLITPWILFRYLVIGLYVGMATVGIFVIWYTHGSFMGIDLTGDGHTLVTYSQLSN WGQCSSWDNFTASPFTAGARTFAFDDDPCDYFHAGKVKATTLSLSVLVAIEMFNSLNALS EDSSLLAMPPWVNPWLLVAMSVSFGLHFLILYVPLLATVFGIVPLSLNEWLLVLLVALPV VLIDEALKLAGRCTSPSSGPTRRSRKKKQKGE

Transcript Sequence

Transcript ID	Zm00001d011013_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:136856323:136861244:1 gene:Zm00001d011013 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium pump1 description:Calcium pump1
Sequence	GGGCGCCCGCATTCATTCCATCCCCCTGCCGCTTGTGGCTGCGGTTGTGGTTGGGAGTAG CCGCAGGCCGCCAGCAGGAGGAAGGTTCGCGGCAGCTTCCTGCGGCCCCACCGAGTTTCC ATTTGAAGAGGGGCGAGGACGCCGTCGTCCTCTGTCCTCCATCCACACTCTTCTGCTTCT GCAACGACTCCCTCCCTGCCTCCTCATCAACTTGCAGTGCAGCAGAAGCCCAAGCAGAGG GAGGAGGAGAGACAGGCGCCGACCAAGCCCCGACCGAGCGAGCGCCGCGCATGCGGTTCC CACCTCCACCCCACCACCACCACTACTCGTAGTCGGGGGCCCACCCAACTGCCTCCGGGA CCGGGACCGGGACCGGGACCAGGACGACTCCTTGTCGTACGTGCTTTCCTCCCGCTGCCG CCGCCGCTTCATCCGCCAGGACTCCGCGCGGGCATTGTTCTCCGACGGCGATGGGCGAGG CAGTGCCCGACCCCGACGACCTGGCCGCGTTCCCGGCGTGGGCGCGGTCGGTGGCGGACT GCGAGGCGCGGCTCGGGGTGAGCGTCACGCGCGGCCTCTCGTCCGCCGAGGCCGCCGCGC GGCTGCGCGCCCACGGACCCAACGAGCTGGCCGACCACCCGGCCCCGTCGCTGCTGCGCC TGCTGCTGGACCAGTTCGAGGACACGCTGGTGCGCGTCCTGCTCGCCGCCGCCGCCGTCT CCTTCCTCCTCGCGCTCTCCTCCAGCGCCGGCGCGCTCACGCTCGCCGCCTTCGTCGAGC CGCTCGTCATCTTCCTCATCCTCGTCGTCAACGCCGCCGTCGGGGTCTGGCAGGAGGCCA ACGCGGAGCGGGCGCTGGACGCGCTGCGGGAGATCCAGTCCCACCACGCCGCCGTCCTGC GCGACGCCGCATGGCTCCCCGCGCTCCCGGCCCGGGACCTCGTCCCGGGCGACGTCGTCC AGCTCCGCGTCGGGGACAAGGTGCCCGCCGACATGCGCGTCGCCAGCCTCCTCACCTCCA CGCTCCGCCTCGAGCAGGGCTCGCTCACGGGGGAGACGGCCTCCGTCAACAAGACCTCCC GCGCGCTCCCGCTCGAGGACGCCGACATCCAGGCCAAGGACTGCATGGTCTTCGCCGGCA CCACCGTCGTCAACGGCGCCGCGCTCTGCATCGTCGCGCGCACCGGGATGGACACGGAGA TCGGCGCCATCCACGCCCAGATCCACCAGGCCTCGCAGGAGGACGACGACACGCCGCTCA AGAAGAAGCTCAACGAGTTCGGGGAGGCGCTCACCAAGATCATCGGCCTCATCTGCGCCC TCGTCTGGCTCATCAACGTCAAGTACTTCCTCACCTTCGACCTCCAGGGAGGATGGGTGC CCAGGAACATCACCTTCTCCTTCGAGAAGTGCACCTACTACTTTGAGATCGCCGTCGCGC TCGCCGTCGCCGCCATACCCGAGGGCCTGCCCGCCGTCATCACCACCTGCCTCGCGCTCG GGACCAGGAAGATGGCTGCCAAGAATGCGCTCGTCAGGAAGCTGCCTAGCGTCGAGACCC TCGGCTGCACCACCGTCATCTGCTCCGACAAGACCGGCACGCTCACCACCAACAAGATGT CCGTCGCCAAGCTCGTGGCCGTCGGCGATTCCTCGCAGGAGGTTAGGACCTTCAAGGTGG ACGGTACGACTTACGATCCCCGGGACGGGAAAATTCACGACTGGCCTGCTGGGAGCATTG ACGCCAACCTTGAGACGATCGCCAAGGTCGCAGCTGTGTGCAATGATGCCAATGTGGCAC ATTCTTCGCATCAGTATGTTGCCACTGGAATGCCGACAGAGGCAGCTCTTAAGGTTTTGG TTGAGAAAATGGGTCTGCCTGGAGGAAAGAATGGTCTGTCCTTGGATCCGTCTGAGATAC TAGGCTGCTGCGCATGGTGGAACAATGTTGCCAAAAGGATTGCTACCCTCGAGTTTGATC GCACAAGGAAATCAATGGGCGTCATTGTGAAAACAAGTTCAGGAAGCAATGCCCTGCTCG TGAAGGGAGCTGTTGAAACTTTGCTTGAGCGAAGTAGCCACATTCAGCTGAAGGATGGTT CCGTGGTGCCATTAGATGAGAAAGCAAAGAGAACTATCCTGGCAAGCCTCCATGAGATGT CGACCAATGCTCTGCGCTGCCTCGGTTTTGCATACAAGGAGGCGCTAGCAGAATTTGCAA CATATGATGGCGAGAACCATCCTGCTCATAAGCTCTTGCTGGATCCGGCCAATTATGCAG CTATTGAGACTGACCTAATATTTGCGGGTCTTGTAGGCCTAAGGGACCCACCCCGGGAAG AGGTCTATGATGCTATTGAAGATTGCAGAGCTGCTGGCATCCGAGTTATGGTGATAACAG GGGACAACAAAGAAACCGCTGAGGCAATATGCCGTGAAATCGGCGTGTTTTCACCTGACG AGGATATCACCTTCAAGAGCCTTACAGGGAAGGAGTTCATGGCGCTGGAGGACAAGAAGA CGCTGCTACGCAGGAAAGGTGGCCTCCTGTTCTCTAGGGCGGAACCTAGGCACAAACAAG AGATTGTGAGGTTGCTGAAGGAAGATGGGGAAGTTGTCGCCATGACTGGAGATGGAGTCA ATGATGCCCCTGCTTTGAAGCTGGCTGACATCGGTGTAGCTATGGGCATTACTGGAACTG AGGTTGCCAAAGAGGCGTCTGACATGGTGTTGGCTGACGACAATTTTAGCACCATAGTTT CTGCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAGATACATGA TTTCGTCAAACATTGGTGAAGTCGCTTCTATATTCCTAACTTCCGCCCTGGGCATTCCTG AGGGTTTGATTCCCGTCCAACTTCTATGGGTCAATCTCGTCACCGACGGGCCCCCCGCAA CTGCTCTAGGTTTCAATCCGCCTGACAAGGACATCATGAAGAAGCCACCTAGGAGGAGCG ACGACTCACTGATCACTCCCTGGATCTTGTTCCGCTACCTGGTGATTGGCCTTTACGTTG GGATGGCGACCGTTGGCATCTTCGTCATATGGTACACACATGGGTCTTTCATGGGCATTG ACCTGACCGGAGACGGCCACACTCTGGTCACCTACTCGCAGCTTTCGAACTGGGGCCAGT GCTCTTCCTGGGACAACTTCACGGCCTCGCCTTTCACCGCCGGAGCCAGAACGTTCGCGT TCGACGACGACCCGTGCGACTACTTCCACGCAGGCAAGGTGAAGGCGACGACGCTGTCCC TGTCCGTGCTGGTGGCCATCGAGATGTTCAACTCGCTGAACGCCCTCTCCGAGGACAGCA GCCTGTTGGCCATGCCGCCCTGGGTCAACCCGTGGCTGCTCGTCGCCATGTCGGTCTCGT TCGGCCTCCACTTCCTCATCCTCTACGTGCCGCTGCTCGCCACGGTGTTCGGCATCGTCC CGCTCAGCCTCAACGAGTGGCTGCTGGTCCTGCTGGTGGCTCTCCCGGTGGTGCTCATCG ACGAGGCTCTCAAGCTCGCGGGCAGGTGTACGAGCCCTTCTTCGGGCCCCACCAGGCGGT CCAGGAAGAAGAAGCAGAAGGGCGAGTAGCGAGCGGGCGCTAACATTTGACTCCGTGCTC AGTTACTAAACCATTCCATTAATCATGTAAACAAAAGATGAACCTCAGTCAGTCAATCAA TCAATACAGGAGATAACCCATTTTCACTGTTTCTCTTTCTACTCTCTCTCCACCCTAACG CCAAAACAACAGCAGCACAGTAGCTTCTTTGTTCTCAGAACAAGTTGTTAATTAGTTGGC AACATATGTTATCCTGTGAATTATGTAGCGTTGAGTCAGATCTTCAGATGATACTTTCCA GTTTTTTTTTCTTTTCTTTTGGCTGTAAATTTCTCTCTTGCCAGTGCAGATGGCAACGAG AGCAAGGTCAGGCCAGAGGGTTGGTCAAACAAAGTTTAACTGCCCTCTTGTGGCCCGAAT