Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d010823_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:8:128844845:128851355:-1 gene:Zm00001d010823 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding
Sequence	ATGGCCGACAAGGAGAAGTTGGAGTCTGAAGAGGAGTACGAGAGCGACCTCGACGACGCA CCCCTCTCCGCGTTGCGGCGCCGGGACGCTGCGAGCGATGACGAGGACGAGGATGAGGAC GGAGGGATGCCCTTGAGGCGGAGGAAGGCTGGATCCGACGCAGATTCCGACGGGCAGGGC GCCGCCGAGGTGTACGACGAGGATGGCGCGTACGAAGAAAGCGAGGAGTACGAGGAATAC GAGTACGGGGGGTTCAAAGCAGGGGGCGGCGGAGTGCGCGGGGTGGCTGTCGAGGCGGTT GCCGGTGCGGGCCATGAGGAAGGCGAGGCGGGGGATGGGGAAGCTGAAAAGGCGGGTGAG GCAGCGCCAGGAGGCGAAGAGGAGGACAAGAAGGGGAACGAACCCTACTCCGTTCCGACG ACCGGCGCCTTCTACATGCACGACGACCGCTTCCAGGAGGGCCGGGGGCGGGGGCGGGGG CGCCAAAGGAGAATGGTGAACAGTAGAAGGTTATGGAGTCCTAAAGATGAGCAAGCCTGG GTTCATGACAGATTTGATGAGATGGACCTGCATGATTTTCATGGTGACAATCCAAAAAGA AAGCAGGGAGGTGTCTTTAGAGGACGTGGTGGTGGACAAGGTGGTAGAACTCGTGGTATT AGCCGTGGTAACTTCAGAGGCAGCAGAACTCGAACATACTATCATGATGGTAGCAAGAAC TACAGCTATGTTCCAAAGGAATCTCATGCATACCGTGATAACACCAAGAATGCCCATCAT TCTTCACACATTAATGGAAAGAATAGAGTTCCAAAACCATCTCGTGACCACTATGATGGT GCTAAAAGTTATGACATTGTCCCAAATGAATCTCACATTTACCATGGTGATGCTAAGAGC CAAAAAAATGCACCAAGAGTAGTTCGAGGGAGAGGCTCCAAGCGTTACCAACCACGCTTG AAAAGCACCTCTGATGTATCTTCAGTGCAAAATACCAAATCTCAGAGTCTTGAAGGCACT TCGTCAAATGCAAACTTGGTAAAAGATGAAGCTCAAGGACCAAATTCACGACTTGAGCAA GTCCTTCCTATTAAGCAGACTGTTGCATCAAACTTGAATTCAGCTTCGCCACCATTTTAT CCTGCGAGGTCATCCAGTCAAGAGTTTGCAGTTGGTCAAGGAGAGAATACACAAGAACTT AGTACTAACCTAGTAAGAGGAAAGGCTTTTGTGCCATCGGGGCATGTTGAAGCTGCTATA AATGGCATGAATAGACCTGCACTGCTTCCACCTGCATCGTCATCAAATGGTCCATTTCCT GTAGCCACTAATCAAGTCAATAGAGATTATGGCCATCCTGCACATCCAATTGTTCAACAA AACCCAGTTCAACCCCCTACACGATCTGCACCCAGGATGCCTGCCCAGATGTTTGGTGCA ACATTCAGCAATGGCAGTAAAATATCACCTGCACAACCTACATCAACTATTTTAGATGAT GACGCTGAAATTTCTTCACCTAGTGGATCAAACAAATATGATTCTCGGTTAACAGTTAAA GGACAACCTGATGACCAAGGAGAAGAGCGAGCTTCGTTTCTCTATGGTGGGGCTCGTGTT CTTGGGGCTACAAGCGCAATGGGAATCACACTTGGTGATCAAAATTTTCATGGTACCCCA GCATTGCTGCCAGTTATGCAGTTTGGAGGTCAGCGACCAGTTGGACGTGGTGTTCCTTCA ATTGGTATGGCTCTGCCAGGATTTGTGTCTCAACAGCAACTTGGTATCAATAATTCTGAG ATGACTTGGCTACCAATATTGACTGGTGCCTCTGGAGCTCTAGGAGCACCTTATGGTTCA CCTTATATAGCCGTCGATGGAAGTTATTACTCTCGACCGCCTGAACAACCATCTTCATCA GTTTCTAATAGAGAATCTAGTGCAAATAATGCTTCTTCTCTGAAGTCCCAAGAAATTACA GAGGTTGCAGGCGACGCAAGAACTCAACACCAAAATAAACCTCGTCGATACTCGGAGATG AACTTTGGCCAGTGA

Peptide Sequence

PEP ID	Zm00001d010823_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:8:128844845:128851355:-1 gene:Zm00001d010823 transcript:Zm00001d010823_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding
Sequence	MADKEKLESEEEYESDLDDAPLSALRRRDAASDDEDEDEDGGMPLRRRKAGSDADSDGQG AAEVYDEDGAYEESEEYEEYEYGGFKAGGGGVRGVAVEAVAGAGHEEGEAGDGEAEKAGE AAPGGEEEDKKGNEPYSVPTTGAFYMHDDRFQEGRGRGRGRQRRMVNSRRLWSPKDEQAW VHDRFDEMDLHDFHGDNPKRKQGGVFRGRGGGQGGRTRGISRGNFRGSRTRTYYHDGSKN YSYVPKESHAYRDNTKNAHHSSHINGKNRVPKPSRDHYDGAKSYDIVPNESHIYHGDAKS QKNAPRVVRGRGSKRYQPRLKSTSDVSSVQNTKSQSLEGTSSNANLVKDEAQGPNSRLEQ VLPIKQTVASNLNSASPPFYPARSSSQEFAVGQGENTQELSTNLVRGKAFVPSGHVEAAI NGMNRPALLPPASSSNGPFPVATNQVNRDYGHPAHPIVQQNPVQPPTRSAPRMPAQMFGA TFSNGSKISPAQPTSTILDDDAEISSPSGSNKYDSRLTVKGQPDDQGEERASFLYGGARV LGATSAMGITLGDQNFHGTPALLPVMQFGGQRPVGRGVPSIGMALPGFVSQQQLGINNSE MTWLPILTGASGALGAPYGSPYIAVDGSYYSRPPEQPSSSVSNRESSANNASSLKSQEIT EVAGDARTQHQNKPRRYSEMNFGQ

Transcript Sequence

Transcript ID	Zm00001d010823_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:128844845:128851355:-1 gene:Zm00001d010823 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding
Sequence	GATTCCGGAAAGTGTCTCGAATCTTCCAAATTCTTTCCCGAGACCTAAAATTCTCTCGAC GGATTCGCCTGATCTGACACGCGATCTCTCGGCTCGCCCCAATGGCCGACAAGGAGAAGT TGGAGTCTGAAGAGGAGTACGAGAGCGACCTCGACGACGCACCCCTCTCCGCGTTGCGGC GCCGGGACGCTGCGAGCGATGACGAGGACGAGGATGAGGACGGAGGGATGCCCTTGAGGC GGAGGAAGGCTGGATCCGACGCAGATTCCGACGGGCAGGGCGCCGCCGAGGTGTACGACG AGGATGGCGCGTACGAAGAAAGCGAGGAGTACGAGGAATACGAGTACGGGGGGTTCAAAG CAGGGGGCGGCGGAGTGCGCGGGGTGGCTGTCGAGGCGGTTGCCGGTGCGGGCCATGAGG AAGGCGAGGCGGGGGATGGGGAAGCTGAAAAGGCGGGTGAGGCAGCGCCAGGAGGCGAAG AGGAGGACAAGAAGGGGAACGAACCCTACTCCGTTCCGACGACCGGCGCCTTCTACATGC ACGACGACCGCTTCCAGGAGGGCCGGGGGCGGGGGCGGGGGCGCCAAAGGAGAATGGTGA ACAGTAGAAGGTTATGGAGTCCTAAAGATGAGCAAGCCTGGGTTCATGACAGATTTGATG AGATGGACCTGCATGATTTTCATGGTGACAATCCAAAAAGAAAGCAGGGAGGTGTCTTTA GAGGACGTGGTGGTGGACAAGGTGGTAGAACTCGTGGTATTAGCCGTGGTAACTTCAGAG GCAGCAGAACTCGAACATACTATCATGATGGTAGCAAGAACTACAGCTATGTTCCAAAGG AATCTCATGCATACCGTGATAACACCAAGAATGCCCATCATTCTTCACACATTAATGGAA AGAATAGAGTTCCAAAACCATCTCGTGACCACTATGATGGTGCTAAAAGTTATGACATTG TCCCAAATGAATCTCACATTTACCATGGTGATGCTAAGAGCCAAAAAAATGCACCAAGAG TAGTTCGAGGGAGAGGCTCCAAGCGTTACCAACCACGCTTGAAAAGCACCTCTGATGTAT CTTCAGTGCAAAATACCAAATCTCAGAGTCTTGAAGGCACTTCGTCAAATGCAAACTTGG TAAAAGATGAAGCTCAAGGACCAAATTCACGACTTGAGCAAGTCCTTCCTATTAAGCAGA CTGTTGCATCAAACTTGAATTCAGCTTCGCCACCATTTTATCCTGCGAGGTCATCCAGTC AAGAGTTTGCAGTTGGTCAAGGAGAGAATACACAAGAACTTAGTACTAACCTAGTAAGAG GAAAGGCTTTTGTGCCATCGGGGCATGTTGAAGCTGCTATAAATGGCATGAATAGACCTG CACTGCTTCCACCTGCATCGTCATCAAATGGTCCATTTCCTGTAGCCACTAATCAAGTCA ATAGAGATTATGGCCATCCTGCACATCCAATTGTTCAACAAAACCCAGTTCAACCCCCTA CACGATCTGCACCCAGGATGCCTGCCCAGATGTTTGGTGCAACATTCAGCAATGGCAGTA AAATATCACCTGCACAACCTACATCAACTATTTTAGATGATGACGCTGAAATTTCTTCAC CTAGTGGATCAAACAAATATGATTCTCGGTTAACAGTTAAAGGACAACCTGATGACCAAG GAGAAGAGCGAGCTTCGTTTCTCTATGGTGGGGCTCGTGTTCTTGGGGCTACAAGCGCAA TGGGAATCACACTTGGTGATCAAAATTTTCATGGTACCCCAGCATTGCTGCCAGTTATGC AGTTTGGAGGTCAGCGACCAGTTGGACGTGGTGTTCCTTCAATTGGTATGGCTCTGCCAG GATTTGTGTCTCAACAGCAACTTGGTATCAATAATTCTGAGATGACTTGGCTACCAATAT TGACTGGTGCCTCTGGAGCTCTAGGAGCACCTTATGGTTCACCTTATATAGCCGTCGATG GAAGTTATTACTCTCGACCGCCTGAACAACCATCTTCATCAGTTTCTAATAGAGAATCTA GTGCAAATAATGCTTCTTCTCTGAAGTCCCAAGAAATTACAGAGGTTGCAGGCGACGCAA GAACTCAACACCAAAATAAACCTCGTCGATACTCGGAGATGAACTTTGGCCAGTGAACAT AGTGATGATAGTAAATCAGTGAGGGTTCATTGGAGCTTTGGATCCAAGTAAGACTTGTGC AAGAGACCCTGGCCTTACCAAGTGCTTCCAGCATTTCACTGTCTGATGTCTAGCACTATC TTGTGACCCAAACGAGGTTTGACAGGAGGTGTTCAAACCATCGCTGTGGTCATTTGCTGT GATTATTCTGACGGGCTGGTGTTGTTACAATCATTAGGTGAGATTTTCTGGTACTCTACG TCACCACAATACCAGACGGTCGGTCCGTAAGTGTGAAGGTCTTGATGGAAATCGTGAGGA CGGAGGTCTCGGTCGTACTGCAAAGCTCGTGTCCCCGCTGTACAGTGTACATCACGTCTC TGACTGTGTTTGGGTGTGCGCTGCCTCTGCCTACGAACTCTTCGGTGGTTGTCGCATTTT TGAACTGACAAATAAAAAAGAACGTGTTGAGCACCAAATTGAGAAGGGCGGACGGTCCAG CCCGGTCCGGACAGTCCGCGCCTGTGGGCTGCACGGTCTGCGCAAGCGCAGAACAGATTA GGGTTCCAAGTTTTGTGCTACAGTTGTTAGCTAGATTCGCAGGATTCGCTTGGAAATTAG TTTGTAAATGGTTCAGTCCCCCTCCTCTATAAATAAAGAGGTATACGGTCGATTTGTAAT AATCAATCGAATCAATAAAACTTCTATCTCGCAT