Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d010678_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:8:124071332:124073432:1 gene:Zm00001d010678 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RING1a
Sequence

ATGGAGTGTTTGCACCGGTTTTGCAGGGACTGCATAGATAAATCGATGCGGCTTGGAAAT
AACGAATGCCCAGCGTGCCGCACTCATTGTGCTAGTAGACGTTCCTTGAGGGATGATCCT
AACTACGATGCTTTGATTCTAGCTTTATATCCAGATATTGATAAGTATGAGGAAGAGGAA
CTTGCATTCAGTGAAGAGGAAAGGACCCGTAACAAAAGGATTCAAGAATCCATTGCTGAG
ACATTTCGGAGGCAAACAGAAGCACTTGTGAAGAAGCGCTCCACTGTAAAAGCAACAGAT
GCAGCTTCTACAAGGAAGACTCGACGGAATATGCGACCAAGGAGGAGAGGACGAATTAGT
TCTCCTGATATTGCCCCAACTGATTTTGACGATGATGATAGAGAAGAGAACGGTGATGAT
GGAAGCAAGGAGTCGTCTTCTGTTGATGATCACTCCCCAGATGTAAGGCCAAAAAGATCT
CGGAGGTGGCCCATGCCACGCCGTTCCCCTGCTAAGGCCATTGGCAATACCGACAATAGC
ATTGAGGATAATGACGACTCAGGAGGTGCTAGGGACTTTATGACTGCTTCTCCGCTGCGG
GGAGAGATGCTTGCATGGGGGAAAAATGGCACCCGCAGCCAAACCCGGCATGGCAACTCC
AGTGGCTCCAGCGGAAGGATGGGCAGGAGTGGCCGTGTTGCCAAGTTGGTAGATCAGTTC
CGTAATGCTGATGACTTCGATAATGAGTTGAACCTGTATCTTGTCCTGCTTCCACTTGAT
GGTCAAAGTGTGCCTAAACTGGAAAAGCCCTACCTCAGTTGCCTGCCAACACTATCTGTT
CGGCATCTCTGCCAGTTTGTTGCTCTCCAGTTGTCTCGGCAACCCAAAGAAGTCGAGATA
TATATCAGGAAAAGCAAGGATGCATGCTTGTCAGCCAATTACACCTGTAAATACGAGACA
AAGCCAGAACAGCCTAATGGTTTAGAGAGACTGTGGGAAGAGAAGTCTCTTTCGGATCTC
TACCCTTCCCTCGCCACCCGTCAAGGAGATCTGGAATTGTTATACTCTCTGAAAGCACAA
GGACAGGGGTAG

Peptide Sequence

PEP ID

Zm00001d010678_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:8:124071332:124073432:1 gene:Zm00001d010678 transcript:Zm00001d010678_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RING1a
Sequence

MECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALILALYPDIDKYEEEE
LAFSEEERTRNKRIQESIAETFRRQTEALVKKRSTVKATDAASTRKTRRNMRPRRRGRIS
SPDIAPTDFDDDDREENGDDGSKESSSVDDHSPDVRPKRSRRWPMPRRSPAKAIGNTDNS
IEDNDDSGGARDFMTASPLRGEMLAWGKNGTRSQTRHGNSSGSSGRMGRSGRVAKLVDQF
RNADDFDNELNLYLVLLPLDGQSVPKLEKPYLSCLPTLSVRHLCQFVALQLSRQPKEVEI
YIRKSKDACLSANYTCKYETKPEQPNGLERLWEEKSLSDLYPSLATRQGDLELLYSLKAQ
GQG

Transcript Sequence

Transcript ID

Zm00001d010678_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:124071332:124073432:1 gene:Zm00001d010678 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RING1a
Sequence

GAAGACAAGGACAGTCATGGAGTGTTTGCACCGGTTTTGCAGGGACTGCATAGATAAATC
GATGCGGCTTGGAAATAACGAATGCCCAGCGTGCCGCACTCATTGTGCTAGTAGACGTTC
CTTGAGGGATGATCCTAACTACGATGCTTTGATTCTAGCTTTATATCCAGATATTGATAA
GTATGAGGAAGAGGAACTTGCATTCAGTGAAGAGGAAAGGACCCGTAACAAAAGGATTCA
AGAATCCATTGCTGAGACATTTCGGAGGCAAACAGAAGCACTTGTGAAGAAGCGCTCCAC
TGTAAAAGCAACAGATGCAGCTTCTACAAGGAAGACTCGACGGAATATGCGACCAAGGAG
GAGAGGACGAATTAGTTCTCCTGATATTGCCCCAACTGATTTTGACGATGATGATAGAGA
AGAGAACGGTGATGATGGAAGCAAGGAGTCGTCTTCTGTTGATGATCACTCCCCAGATGT
AAGGCCAAAAAGATCTCGGAGGTGGCCCATGCCACGCCGTTCCCCTGCTAAGGCCATTGG
CAATACCGACAATAGCATTGAGGATAATGACGACTCAGGAGGTGCTAGGGACTTTATGAC
TGCTTCTCCGCTGCGGGGAGAGATGCTTGCATGGGGGAAAAATGGCACCCGCAGCCAAAC
CCGGCATGGCAACTCCAGTGGCTCCAGCGGAAGGATGGGCAGGAGTGGCCGTGTTGCCAA
GTTGGTAGATCAGTTCCGTAATGCTGATGACTTCGATAATGAGTTGAACCTGTATCTTGT
CCTGCTTCCACTTGATGGTCAAAGTGTGCCTAAACTGGAAAAGCCCTACCTCAGTTGCCT
GCCAACACTATCTGTTCGGCATCTCTGCCAGTTTGTTGCTCTCCAGTTGTCTCGGCAACC
CAAAGAAGTCGAGATATATATCAGGAAAAGCAAGGATGCATGCTTGTCAGCCAATTACAC
CTGTAAATACGAGACAAAGCCAGAACAGCCTAATGGTTTAGAGAGACTGTGGGAAGAGAA
GTCTCTTTCGGATCTCTACCCTTCCCTCGCCACCCGTCAAGGAGATCTGGAATTGTTATA
CTCTCTGAAAGCACAAGGACAGGGGTAGATCAGATATTCACTATCAACTCGACCAGTCGC
CTCAACGCCACTGTCTGCAAGGACCTTCAACTGGTGGAAGCTTGTACATAAGGCTTTCAA
TATAGAAAAAGATCTGAAAGTAGCTTACTTGTTTTAAATTTGCTCTGATATCTTGTGAGG
TATATGGTATACCCAGGTTCATTAGTAAAAATGTGTGGAGTTGAGCAGTAGCAAACCAAC
CATCTGAAACAGGCTGAGCAAAGCTTGTCTATTTCTGCAGCC