Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d010625_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:8:122238035:122247813:1 gene:Zm00001d010625 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

ATGCAATTGTTTTTCTTCTTCTTTGGTCATGTCATCCTCCTTAAGTCCCCCTCTAATTAT
TCAAGGTACATTCGGCGAGGACAACCGGATGCTGGTTTCCCTCTTTTTGAGTCCGAGTCC
TTGAAATGGCCTGGATTTGTAGAGTTTGATGATGTCAATGGAAAGGTTTTGACTTACTCT
GCTCAAGACAGCACTTACAAGGTGTTTGATTTGAAAAACTACACATTACTGTATTCGGTG
TCAGATAAAAATGTTCAAGAAATAAAGATCAGCCCTGGGATAATGCTATTGATTTATACA
AGAACAAATAGCTCGGTTCCTCTGAAGATTCTTTCCATTGAGGATGGTACAGTCTTGAAG
TCCTTCAGCCACCTTCTCCATCGTAACAAGAAGGTAGATTTCATTGAACAGTTCAATGAA
AAGCTTCTGGTCAAGCAGGAAGGGGAGAATCTTCAAATTCTTGATGTAAGGAACTTCCAA
TTGACAGAAGTGAGCAGAACTGAGTTTATGACTCCATCTGCCTTTATTTTTCTGTATGAG
CTGCAACTGTTCCTGACGTTCCGGAATCGATCAGTAGCAGTTTGGAACTTTCGAGGTGAA
CTGGTCACATCATTTGAAGATCACCTGTTGTGGCACCCTGACTGCAACACAAACAACATA
TACATTACAAGTGATCAAGATCTTATTATTTCATACTGCAAGGCTGACTCAACTGATTCC
TCTTCAGAAGAAAATGCTGGCTCTATAAACATAAGCAGCATACTGACCGGCAAATGCTTG
GCAAAAATAAACCCTGGAAATTCGTGCAAGCAAAAGGATCCATGCAAGCAGAAGAAAGCA
TGGAGGTTCCAGAATACAGTCTCGGAGGCCCTGGAGGACATCACAGCTCTATACTATGAC
GAAGATCGTGACGAGATCTACACTGGCAACCGGCATGGCCTTGTCCATGTGTGGTCGAAC
TGA

Peptide Sequence

PEP ID

Zm00001d010625_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:8:122238035:122247813:1 gene:Zm00001d010625 transcript:Zm00001d010625_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

MQLFFFFFGHVILLKSPSNYSRYIRRGQPDAGFPLFESESLKWPGFVEFDDVNGKVLTYS
AQDSTYKVFDLKNYTLLYSVSDKNVQEIKISPGIMLLIYTRTNSSVPLKILSIEDGTVLK
SFSHLLHRNKKVDFIEQFNEKLLVKQEGENLQILDVRNFQLTEVSRTEFMTPSAFIFLYE
LQLFLTFRNRSVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSTDS
SSEENAGSINISSILTGKCLAKINPGNSCKQKDPCKQKKAWRFQNTVSEALEDITALYYD
EDRDEIYTGNRHGLVHVWSN

Transcript Sequence

Transcript ID

Zm00001d010625_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:122238035:122247813:1 gene:Zm00001d010625 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

GTAATCCTGCCTTTCTCTCTCTTCTGTCTTCTCCCCTGATTCTCCAAGCCGAGCTCGAGC
TTCCAAACCCTAGGCCTCACCGGGGAGCCATATCCGCCACGCCAGCGATGCCTCTCGCCG
CAGCGGCTTGACGGGGCCTGCCCCCAAATCTACCTCTTCAGCGGAGAGGCGCTGCGTGGT
TGCTGTGGGAGGCGCGGCGCGGGTCGGAAATGGAGCCGAGGAGGATCTCGGCGAGCCCGC
GCCCGTGCAGCGTGCGGCGGGTGGTGGCCAGGAAGAGGCCGAGGCAGGAGGCGGTGGTGA
GCAGCGTGCGGAAGCTGCAGCGCCGGGAGATCAGCTCACGCCGCGACCGCGCCTTCGCCA
TGAGCGCCGCACAGGAGCGCTTTCGCAACATACATCTGCAGGTTTGCCCCTAGTCCAGTT
ACCACTATGTCAGCATCACTTAGATCCTTTTCGTATGCCTTCGTGTCGTGGTCAGCCGCC
ATTCTTGGTATGAGGAATTACGGGTCGGGGGGTGCTCATTGGCCTAGTTTAGAGAGAGCT
GGCCGATTTACTTGAGATCTGTGTAGCATGCTTTTGAATTCTTGTTGGTTATGTACTGTG
AGTGTAGCTCAGTGCTGAACGGCGTGCCCGATGAGTGGTAAAGATTGTCTGATACGTGTC
GTGTGGCTTATAAAGCAATGCCTGTTTGAGGACTGGCCAAATTTAATCTTCGGCTGTGCA
ATCCGTCAAGCCTCCTTTTGCCTTACCTGCTTAGTTATTTGCACAGTTCTGGTGTGTTCG
GTCTGGTGCACTTTTTTATTTGCGGGATATTTACTTGTTCAAGGAAGAAGAGGGCATTGC
GTGCTTAAATGCTGATGTTTGGGATTTGTCGAAACCTGATAATCTAGGATTGTTTGAATC
TGCCTATTCCCTATAGGCTATAGCAAATGCCAGTTACAATTTTCTGCTGTTGTCTCTATG
CTGCCAAGTTGGGTCTGTGCTACACATGCTGGAATCAGCTGCTAACCAAATAACTGATTG
TCACCTCTGTGACACTTGATGTCTTTATTCTGTAGTATGAATTTGCCAATCTTGTCTTGT
ATCTCTGAGTATGGATTTAGTACTTCTTATTCTGCATTCAAAGAAGAGAAACGACACCTT
CCTAGTTTGGATAACTAGGCTTGTGTTATCGTTCACACTCCAATGTTCAAACACAAGCAC
TCTGCCAGGAAATCACTGTATTAGAGCTACAATCTTCGTAATATCTGTATTTTTGTCACT
GTTTGCGCAGCAATGAATTTACCTCAAGTTCTGTTTTTCTTTTGTAATATCAGTTGACTG
CACTCTAACTTTCTGATAAAGCATCTTTTTCTGTCAATTGTAGGAAGAGTTTGACACTCA
TGATCCAAAGGAGAACACTTTGCTACTCCCTTACTTGAGGAAAAGGTCAAAAATTATTGA
GATAGTCGCAGCGCGTGATATAGTCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCTTT
TAGTAGAGAGGCAAATGAGAGAATATGTTTTCTGAATGGAAGTCCAGATGAAGTTATCCG
CAGTTTATTTTACAACAAGAATAATGACTCACTCATTACCGTGTCAGTATATGGTTCTGA
AAACTTCAGTGCTCTGCGATGCAGAACAACCCGGATAGAGTATGCTTTGTCAATGCAATT
GTTTTTCTTCTTCTTTGGTCATGTCATCCTCCTTAAGTCCCCCTCTAATTATTCAAGGTA
CATTCGGCGAGGACAACCGGATGCTGGTTTCCCTCTTTTTGAGTCCGAGTCCTTGAAATG
GCCTGGATTTGTAGAGTTTGATGATGTCAATGGAAAGGTTTTGACTTACTCTGCTCAAGA
CAGCACTTACAAGGTGTTTGATTTGAAAAACTACACATTACTGTATTCGGTGTCAGATAA
AAATGTTCAAGAAATAAAGATCAGCCCTGGGATAATGCTATTGATTTATACAAGAACAAA
TAGCTCGGTTCCTCTGAAGATTCTTTCCATTGAGGATGGTACAGTCTTGAAGTCCTTCAG
CCACCTTCTCCATCGTAACAAGAAGGTAGATTTCATTGAACAGTTCAATGAAAAGCTTCT
GGTCAAGCAGGAAGGGGAGAATCTTCAAATTCTTGATGTAAGGAACTTCCAATTGACAGA
AGTGAGCAGAACTGAGTTTATGACTCCATCTGCCTTTATTTTTCTGTATGAGCTGCAACT
GTTCCTGACGTTCCGGAATCGATCAGTAGCAGTTTGGAACTTTCGAGGTGAACTGGTCAC
ATCATTTGAAGATCACCTGTTGTGGCACCCTGACTGCAACACAAACAACATATACATTAC
AAGTGATCAAGATCTTATTATTTCATACTGCAAGGCTGACTCAACTGATTCCTCTTCAGA
AGAAAATGCTGGCTCTATAAACATAAGCAGCATACTGACCGGCAAATGCTTGGCAAAAAT
AAACCCTGGAAATTCGTGCAAGCAAAAGGATCCATGCAAGCAGAAGAAAGCATGGAGGTT
CCAGAATACAGTCTCGGAGGCCCTGGAGGACATCACAGCTCTATACTATGACGAAGATCG
TGACGAGATCTACACTGGCAACCGGCATGGCCTTGTCCATGTGTGGTCGAACTGAAAGCC
GAAATAGTGGCGGCTTTCACCCACAGCATGGTGATCTTCACCTGTATGTGTATTAACAGC
TTGTACCTCACATGGCAGGGGGGCACGAAGACGGACCCCCCAGCCACCAGAGGCAATTCT
TATTTATCCCACCAGCGTGGCAAGAGCTCTCACCACATAGGCACCCATTCAGAAATCAGA
ACACCCCCTCCCCGATTTGTTGTA