Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d010572_T028
CDS Infomation	cds chromosome:B73_RefGen_v4:8:120660790:120673477:1 gene:Zm00001d010572 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase UPL4
Sequence	ATGGAGAAGGTCCTACCTTTGATCCACACTGGTGGACTCACGGCCCTTAGCCCATCGACA TGTAGTAATCTGATTGGGCTTCTTGCTAAGCTAGCCTGTACTTCACTTGTGGCAGTGAAA TCTCTGTTTGAGCTGGGTGTTAGTAGCACAATAAAGGGGATTTTGATCACTTCAGACATT TCCCATGGCATGCCATATTTGCCTCTGGAAAAACAAAACAATCAGGTCAATGAAGCTCTT AAACTAGCAAACCAGTTGATTCCTTCAGCAGCAAGGGATGTTGAAGACACCCAGATCATA CTAGCGAAAGAAAAAATACTTACGGATGAACCAAGGTTCTTGTGTCAATTCTCTAGGGAT ATTCTTCCTGTCTTGATCAAGGCGGTGAACTCTGGTGCCAATTCATACATTTGCTATGGG TGTGCTTCAATTGTTAACAATATTTGTTACTTCAGTAAATCAGAAATACTTCAGGACTTG CTCAAGGAAACAAACATACCAAGCTTCTTGGCTGGTTTATTGTCTAGAAAGGATCATCAT GTGCTGACCTCATCACTAAAGATAGTCGAGATTCTCATGCAAAAGCTTCCTAATGCATAC CTTGGTTTCTTTATCAAGGAAGGTGTCGTCAATGCAGTTGAGGCGCTTCTTAATCAACAG GATTGTTCAAAATCCACCCATATGCCTGATAACATGCAACAACCTGAGACTCAACCTGTC ATAAGAAATAAGACTACATGTTTCTGCTACGCATTTGATGCCTGTAGATCTGAAGCTGCT GAAAAAAGGACTTGCAGGATTGGGAAGGACAGTCTTTTTACTTTTGCCAGGCATGTGAAG ACAACTTACTTTACTAAGGATGTAGTGAGCTCTGAGATGGGGTTAACTGAGATTTTGCAG AAACTCAAAAATTGCTGTGCAGTTTTGAATGAGACCACAGACAAGTCATCTGAACAATGC AATCTTCAAAATGAAGAATACTTATCTACCATTTTAAGTGAGGTGATGATGGAGCTTCAT GGGGGAGAAACAATGACAACCTTTGAATTTCTTGAGAGTGGATTGGTTAAATCTTTATCA AATTACCTCTCAAATGGCAAGTACCTCCAGGTGGAGGACAATATGGGTTGCAGTTCTGAC CATCTTTTGGCTGTGGTGAAAAGATTTCAGTCATTTTCTCGGATGTCTTTCTCAAGAATG GGCCAAGGTTGGGATGACATGCTCCTGACACTTTTAGTAAGGAAGCTGCAGAATGCTCTT ACTTCTCTTGACAACTTTCCAGTTATAATGAGCCACAACTTCAAGCCAAGGAGCAGTATT GCTGATATCCCTACAAGGCACTCAACAATTACTCCATGTATCCGAGTAAGATTCAAGAAA GACGAAGATGAAACTAAATTGTCAAGCTATAACAGTGCCGTGAATGTGGAAATATCGTCA TCCTTGCAAACCATTGAAGAATTTCTATGGCCCAAAGTTAGTATAGATGTCAATAGTCAA AAGGCTGAATCACCACCTAGTGACACTGCTTTGGAAATCAAATATGCTGACGATGACTCT CAGGAACAAGATTCCACACCTAGTCAGAAGGCTGATTCACCATCAGAGGGCCTCACTTGT GGAAGTCAGAATCTACCTGCAGAAACATGTCCGAAGCAAGGAACTTCATCTTCTGGTCAA GCAGAAAGAAACACAACAATCTTGAGTGATTACACCATACAACAAAAATTGGTATTTAGC TTAAATGGGAAAGAGCTTGACCGGTCTGTTACTCTATATCAGTCAATCCTGCAGGATCAT ATCAATGCAGGGTCTGAGATAATTCTGGACATGCAGTTTTGGCGCAGTGTACATGACATA ACTTTCAAAGCTGCTAATCCAGAAGCAAATAGAACAGCTGTTAACCCAGAAGCAAATGAT TCTCCTAGGCATTCCTCTACTGCAATGTCATCAATAAATGAGAATACAACTGGGTTTACA TGGCAGATGCTCCCATTCTTTTCTAGTATGTTGCTTGGTAAACTTCCTTGCAAACTTGAC AGATCAGGTGCTTCGTATGACATATTGTTTATGTTACACATTTTAGAGGGATTAAACAGG TATTCCTTTCACCTCGTGTCTGATGAGAGAAACCGTTCTTTTGCCCATGGAAGGATAACT AACCTTGATGATCTGAAGGCTGAAGTTTTCTCGATTCCTCAGCAAGAGTTTGTCAGCGCC AAATTAACAGATAAATTGGAGCAACAAATGCATGATCCATTAGTTTCAAGGTCTTGCTGC CTGCCTTTATGGTGCATTGAACTGATGTCTGCATGTCCTTTCTTATTTTCATTTGAGGCG AGATGGAAGTATTTCCAGTTGACGGCATTTGGTTCTTTGAAAAATCATCATGGCCACATG ATGGATGCAAGTGTTAACAGTGTTGCGGAAAGGGGGTCTTCCCACTCACGGAAAAAGTTC AAAGTTGATCGTGATGATATACTGGTTTCAGCAGCAAAAATGATGAAGTCCCATGCTAAG AGCAATGCTCTACTTGAAGTAGAATATAAAGAGGAAGTGGGCACTGGTTTAGGTCCTACA ATGGAATTCTATACATTGATAAGTCATGAATTTCAGAAGTCTGGTCTAGGCATGTGGAGA GGGGAACTTCCTTGTAAATCTGGTACCCATGATACTCATGTTTCTAGATTTGTGGTTGCC TCTAATGGACTTTTCCCTAGACCTTGGTCTGCTTCTGAAGATCCTGCTTCCTTTCAAGAA GTGAGCGAGCGATTCCACTTACTTGGTCTGGTTGTTGCAAAAGCAATTAAAGACAACAGA ATTCTTGACATTCCATTTTCTAAAGCATTCTACAAACTTATCCTTGGACAGGAGCTTAAT ATATATGATATCCAGTCATTAGATTCTGAACTGGCCATATGCCTTGTGGAGTTTCAAGCG CTTGCTTGTCAGAGAAAATATGCAGAGTCCAATTTGACAAGGGACTGCCAGATATCAGAT TTGACTTATCGGGGTTGTAGAATTGAGGATCTTGCTATTGAGTTCGCTCTCCCAGGATAT CCAGAATATGTGCTCTCGCCAGGAAGTCGCTCTGACTGTTTGAATGCTGAGAATTTGGAA GAATATGTTCGTCATGTTGTTGACGCAACGGTTAAAAGTGGAATTGCAAGACAGATGGAA GCTTTTAAGTCAGGATTTAATGAGGTATTTCCGCTAAAAAAACTCCAGGTTTTTTCAGAG GACGAGCTAGAGAGATTACTTTGTGGTGAACAAGATACATGGGATTTTGCGAAACTTGTG GATCACATCAAATTTGATCATGGCTACACTTCCAGCAGCCCTCCTGTCATTAATTTGCTG GAAATCATACAAGAGTTTGGATCCATTCAACGTAGAGCTTTCTTGCAATTTATAACGGGT TCACCTCGGCTTCCACCAGGCGGCTTGGCTGCACTAAATCCAAAGTTCACAGTTGTTCGA AAGAATAACAGCAATGATGTTGATCATGACCTGCCGAGCGTGATGACTTGTGCCAACTAT CTTAAGTTACCTCCATACTCTTCAAAGGAAAAGATGAGAGAGAAACTCCTCTATGCAATT ACAGAGGGCCAGGGATCCTTCCACCTATCTTAA

Peptide Sequence

PEP ID	Zm00001d010572_P028
PEP Infomation	pep chromosome:B73_RefGen_v4:8:120660790:120673477:1 gene:Zm00001d010572 transcript:Zm00001d010572_T028 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase UPL4
Sequence	MEKVLPLIHTGGLTALSPSTCSNLIGLLAKLACTSLVAVKSLFELGVSSTIKGILITSDI SHGMPYLPLEKQNNQVNEALKLANQLIPSAARDVEDTQIILAKEKILTDEPRFLCQFSRD ILPVLIKAVNSGANSYICYGCASIVNNICYFSKSEILQDLLKETNIPSFLAGLLSRKDHH VLTSSLKIVEILMQKLPNAYLGFFIKEGVVNAVEALLNQQDCSKSTHMPDNMQQPETQPV IRNKTTCFCYAFDACRSEAAEKRTCRIGKDSLFTFARHVKTTYFTKDVVSSEMGLTEILQ KLKNCCAVLNETTDKSSEQCNLQNEEYLSTILSEVMMELHGGETMTTFEFLESGLVKSLS NYLSNGKYLQVEDNMGCSSDHLLAVVKRFQSFSRMSFSRMGQGWDDMLLTLLVRKLQNAL TSLDNFPVIMSHNFKPRSSIADIPTRHSTITPCIRVRFKKDEDETKLSSYNSAVNVEISS SLQTIEEFLWPKVSIDVNSQKAESPPSDTALEIKYADDDSQEQDSTPSQKADSPSEGLTC GSQNLPAETCPKQGTSSSGQAERNTTILSDYTIQQKLVFSLNGKELDRSVTLYQSILQDH INAGSEIILDMQFWRSVHDITFKAANPEANRTAVNPEANDSPRHSSTAMSSINENTTGFT WQMLPFFSSMLLGKLPCKLDRSGASYDILFMLHILEGLNRYSFHLVSDERNRSFAHGRIT NLDDLKAEVFSIPQQEFVSAKLTDKLEQQMHDPLVSRSCCLPLWCIELMSACPFLFSFEA RWKYFQLTAFGSLKNHHGHMMDASVNSVAERGSSHSRKKFKVDRDDILVSAAKMMKSHAK SNALLEVEYKEEVGTGLGPTMEFYTLISHEFQKSGLGMWRGELPCKSGTHDTHVSRFVVA SNGLFPRPWSASEDPASFQEVSERFHLLGLVVAKAIKDNRILDIPFSKAFYKLILGQELN IYDIQSLDSELAICLVEFQALACQRKYAESNLTRDCQISDLTYRGCRIEDLAIEFALPGY PEYVLSPGSRSDCLNAENLEEYVRHVVDATVKSGIARQMEAFKSGFNEVFPLKKLQVFSE DELERLLCGEQDTWDFAKLVDHIKFDHGYTSSSPPVINLLEIIQEFGSIQRRAFLQFITG SPRLPPGGLAALNPKFTVVRKNNSNDVDHDLPSVMTCANYLKLPPYSSKEKMREKLLYAI TEGQGSFHLS

Transcript Sequence

Transcript ID	Zm00001d010572_T028
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:120660790:120673477:1 gene:Zm00001d010572 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase UPL4
Sequence	GATAGTAGAGAAGGTTGCAGCTTGCCTGGTAAGCATTGCGGACTCCTTTAGCACTTCGGT TGATCTTGTCGATCATCTCTGCCACCAGGGTGTTATGGAGAAGGTCCTACCTTTGATCCA CACTGGTGGACTCACGGCCCTTAGCCCATCGACATGTAGTAATCTGATTGGGCTTCTTGC TAAGCTAGCCTGTACTTCACTTGTGGCAGTGAAATCTCTGTTTGAGCTGGGTGTTAGTAG CACAATAAAGGGGATTTTGATCACTTCAGACATTTCCCATGGCATGCCATATTTGCCTCT GGAAAAACAAAACAATCAGGTCAATGAAGCTCTTAAACTAGCAAACCAGTTGATTCCTTC AGCAGCAAGGGATGTTGAAGACACCCAGATCATACTAGCGAAAGAAAAAATACTTACGGA TGAACCAAGGTTCTTGTGTCAATTCTCTAGGGATATTCTTCCTGTCTTGATCAAGGCGGT GAACTCTGGTGCCAATTCATACATTTGCTATGGGTGTGCTTCAATTGTTAACAATATTTG TTACTTCAGTAAATCAGAAATACTTCAGGACTTGCTCAAGGAAACAAACATACCAAGCTT CTTGGCTGGTTTATTGTCTAGAAAGGATCATCATGTGCTGACCTCATCACTAAAGATAGT CGAGATTCTCATGCAAAAGCTTCCTAATGCATACCTTGGTTTCTTTATCAAGGAAGGTGT CGTCAATGCAGTTGAGGCGCTTCTTAATCAACAGGATTGTTCAAAATCCACCCATATGCC TGATAACATGCAACAACCTGAGACTCAACCTGTCATAAGAAATAAGACTACATGTTTCTG CTACGCATTTGATGCCTGTAGATCTGAAGCTGCTGAAAAAAGGACTTGCAGGATTGGGAA GGACAGTCTTTTTACTTTTGCCAGGCATGTGAAGACAACTTACTTTACTAAGGATGTAGT GAGCTCTGAGATGGGGTTAACTGAGATTTTGCAGAAACTCAAAAATTGCTGTGCAGTTTT GAATGAGACCACAGACAAGTCATCTGAACAATGCAATCTTCAAAATGAAGAATACTTATC TACCATTTTAAGTGAGGTGATGATGGAGCTTCATGGGGGAGAAACAATGACAACCTTTGA ATTTCTTGAGAGTGGATTGGTTAAATCTTTATCAAATTACCTCTCAAATGGCAAGTACCT CCAGGTGGAGGACAATATGGGTTGCAGTTCTGACCATCTTTTGGCTGTGGTGAAAAGATT TCAGTCATTTTCTCGGATGTCTTTCTCAAGAATGGGCCAAGGTTGGGATGACATGCTCCT GACACTTTTAGTAAGGAAGCTGCAGAATGCTCTTACTTCTCTTGACAACTTTCCAGTTAT AATGAGCCACAACTTCAAGCCAAGGAGCAGTATTGCTGATATCCCTACAAGGCACTCAAC AATTACTCCATGTATCCGAGTAAGATTCAAGAAAGACGAAGATGAAACTAAATTGTCAAG CTATAACAGTGCCGTGAATGTGGAAATATCGTCATCCTTGCAAACCATTGAAGAATTTCT ATGGCCCAAAGTTAGTATAGATGTCAATAGTCAAAAGGCTGAATCACCACCTAGTGACAC TGCTTTGGAAATCAAATATGCTGACGATGACTCTCAGGAACAAGATTCCACACCTAGTCA GAAGGCTGATTCACCATCAGAGGGCCTCACTTGTGGAAGTCAGAATCTACCTGCAGAAAC ATGTCCGAAGCAAGGAACTTCATCTTCTGGTCAAGCAGAAAGAAACACAACAATCTTGAG TGATTACACCATACAACAAAAATTGGTATTTAGCTTAAATGGGAAAGAGCTTGACCGGTC TGTTACTCTATATCAGTCAATCCTGCAGGATCATATCAATGCAGGGTCTGAGATAATTCT GGACATGCAGTTTTGGCGCAGTGTACATGACATAACTTTCAAAGCTGCTAATCCAGAAGC AAATAGAACAGCTGTTAACCCAGAAGCAAATGATTCTCCTAGGCATTCCTCTACTGCAAT GTCATCAATAAATGAGAATACAACTGGGTTTACATGGCAGATGCTCCCATTCTTTTCTAG TATGTTGCTTGGTAAACTTCCTTGCAAACTTGACAGATCAGGTGCTTCGTATGACATATT GTTTATGTTACACATTTTAGAGGGATTAAACAGGTATTCCTTTCACCTCGTGTCTGATGA GAGAAACCGTTCTTTTGCCCATGGAAGGATAACTAACCTTGATGATCTGAAGGCTGAAGT TTTCTCGATTCCTCAGCAAGAGTTTGTCAGCGCCAAATTAACAGATAAATTGGAGCAACA AATGCATGATCCATTAGTTTCAAGGTCTTGCTGCCTGCCTTTATGGTGCATTGAACTGAT GTCTGCATGTCCTTTCTTATTTTCATTTGAGGCGAGATGGAAGTATTTCCAGTTGACGGC ATTTGGTTCTTTGAAAAATCATCATGGCCACATGATGGATGCAAGTGTTAACAGTGTTGC GGAAAGGGGGTCTTCCCACTCACGGAAAAAGTTCAAAGTTGATCGTGATGATATACTGGT TTCAGCAGCAAAAATGATGAAGTCCCATGCTAAGAGCAATGCTCTACTTGAAGTAGAATA TAAAGAGGAAGTGGGCACTGGTTTAGGTCCTACAATGGAATTCTATACATTGATAAGTCA TGAATTTCAGAAGTCTGGTCTAGGCATGTGGAGAGGGGAACTTCCTTGTAAATCTGGTAC CCATGATACTCATGTTTCTAGATTTGTGGTTGCCTCTAATGGACTTTTCCCTAGACCTTG GTCTGCTTCTGAAGATCCTGCTTCCTTTCAAGAAGTGAGCGAGCGATTCCACTTACTTGG TCTGGTTGTTGCAAAAGCAATTAAAGACAACAGAATTCTTGACATTCCATTTTCTAAAGC ATTCTACAAACTTATCCTTGGACAGGAGCTTAATATATATGATATCCAGTCATTAGATTC TGAACTGGCCATATGCCTTGTGGAGTTTCAAGCGCTTGCTTGTCAGAGAAAATATGCAGA GTCCAATTTGACAAGGGACTGCCAGATATCAGATTTGACTTATCGGGGTTGTAGAATTGA GGATCTTGCTATTGAGTTCGCTCTCCCAGGATATCCAGAATATGTGCTCTCGCCAGGAAG TCGCTCTGACTGTTTGAATGCTGAGAATTTGGAAGAATATGTTCGTCATGTTGTTGACGC AACGGTTAAAAGTGGAATTGCAAGACAGATGGAAGCTTTTAAGTCAGGATTTAATGAGGT ATTTCCGCTAAAAAAACTCCAGGTTTTTTCAGAGGACGAGCTAGAGAGATTACTTTGTGG TGAACAAGATACATGGGATTTTGCGAAACTTGTGGATCACATCAAATTTGATCATGGCTA CACTTCCAGCAGCCCTCCTGTCATTAATTTGCTGGAAATCATACAAGAGTTTGGATCCAT TCAACGTAGAGCTTTCTTGCAATTTATAACGGGTTCACCTCGGCTTCCACCAGGCGGCTT GGCTGCACTAAATCCAAAGTTCACAGTTGTTCGAAAGAATAACAGCAATGATGTTGATCA TGACCTGCCGAGCGTGATGACTTGTGCCAACTATCTTAAGTTACCTCCATACTCTTCAAA GGAAAAGATGAGAGAGAAACTCCTCTATGCAATTACAGAGGGCCAGGGATCCTTCCACCT ATCTTAACCAATAAGCGATAATGATACTTCGCATGCAACAGGAGTTTCTCTTTGTAAGTA TCTCGTAGGAAAGGAAAACACGGTGTAAATGTGGGTGGTTCACTGCTTATTTTAGCTGAC AGCACGATCTGGTGGAGCTGATTTTAGGAGAGAAAAAAACGGCTACCGCTCTTTGTACAT ACTAGGTTTCAGGTGTGATCAAGCAGATCACTAGTGTGCCTAGTTCGCTACTCTTTTGTT CAAACTTTCGGTGTACATATGCGTGCCTGCCTGATAGAAGTGC