Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d010507_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:8:118419214:118420164:-1 gene:Zm00001d010507 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence	ATGGAGCCTGGTCCCGACGGGCCTGCTGGTGGCCAAGGAACCAGTGCGCCAGCGGAGGCC GGGCCGTCTCCGTCGTCGTCATCGGCCGCCGCAGCCGCCTCGTCGTCGAGTCGGAAGCAG GCAGAGCAGCAAGCGCCGCCGCAGCAACAAGCAGGAGCACAGCAGAGGCAACAGCAGGCA GCAAGGGCCCAGCATCAGGAAGCTCCAGCGCCGCAGGCGGCCCAGGCCCAACCGCAGCCA CTGGCGCAGCAGCCTCCGCCGCCTCCTCCTCCAGCGGGGCTGAGCCGGTACGAGTCGCAG AAGCGCCGCGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACAAGCCGCCACTGACG CTGGCCCGCTGCAGCGGCGCGCACGTCATCGAGTTCCTCCGCTACCTGGACCAGTTCGGC AAGACCAAGGTGCACACCGAGGGCTGCGCCCACTTCGGCCAGCCCAACCCGCCGGCGCCC TGCGCGTGCCCGCTGCGCCAGGCGTGGGGCAGCCTCGACGCGCTCATCGGCCGCCTCCGC GCCGCGTACGAGGAGTCCGGCGGCCGCCCCGAGTCCAACCCGTTCGCGGCCAAGGCCGTG CGCATCTACCTCCGCGACGTGCGGGAGGCGCAGGCCAAGGCGCGCGGCATCCCCTACGAG AAGAGGAAGCGCAAGCGCGGAAGCGCGGCCGCGGCGCCTCCAGTTGCGCCGCCTCCTGTT GTAACTGCAGAGACCGCAGGGACCACGTCAGGGACCGTCTGTGACGAGGAGGAGGAACCA TCGCCGTCTGCAGGTGATGAACCACAGAAGCAGACCACCACGCCGACGTCCGCCTCGGCT CCTCCTACAAGTACTTCCAGCGCTAGTGCAAGTAGTAGCAGTGCCGCCGCGGCCACCACG TCGACGACGACGACAAGGAAGGAGGAAGAAGGATCCGCGCCAAGCTCGTGA

Peptide Sequence

PEP ID	Zm00001d010507_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:8:118419214:118420164:-1 gene:Zm00001d010507 transcript:Zm00001d010507_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence	MEPGPDGPAGGQGTSAPAEAGPSPSSSSAAAAASSSSRKQAEQQAPPQQQAGAQQRQQQA ARAQHQEAPAPQAAQAQPQPLAQQPPPPPPPAGLSRYESQKRRDWNTFLQYLRNHKPPLT LARCSGAHVIEFLRYLDQFGKTKVHTEGCAHFGQPNPPAPCACPLRQAWGSLDALIGRLR AAYEESGGRPESNPFAAKAVRIYLRDVREAQAKARGIPYEKRKRKRGSAAAAPPVAPPPV VTAETAGTTSGTVCDEEEEPSPSAGDEPQKQTTTPTSASAPPTSTSSASASSSSAAAATT STTTTRKEEEGSAPSS

Transcript Sequence

Transcript ID	Zm00001d010507_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:118419214:118420164:-1 gene:Zm00001d010507 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence	ATGGAGCCTGGTCCCGACGGGCCTGCTGGTGGCCAAGGAACCAGTGCGCCAGCGGAGGCC GGGCCGTCTCCGTCGTCGTCATCGGCCGCCGCAGCCGCCTCGTCGTCGAGTCGGAAGCAG GCAGAGCAGCAAGCGCCGCCGCAGCAACAAGCAGGAGCACAGCAGAGGCAACAGCAGGCA GCAAGGGCCCAGCATCAGGAAGCTCCAGCGCCGCAGGCGGCCCAGGCCCAACCGCAGCCA CTGGCGCAGCAGCCTCCGCCGCCTCCTCCTCCAGCGGGGCTGAGCCGGTACGAGTCGCAG AAGCGCCGCGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACAAGCCGCCACTGACG CTGGCCCGCTGCAGCGGCGCGCACGTCATCGAGTTCCTCCGCTACCTGGACCAGTTCGGC AAGACCAAGGTGCACACCGAGGGCTGCGCCCACTTCGGCCAGCCCAACCCGCCGGCGCCC TGCGCGTGCCCGCTGCGCCAGGCGTGGGGCAGCCTCGACGCGCTCATCGGCCGCCTCCGC GCCGCGTACGAGGAGTCCGGCGGCCGCCCCGAGTCCAACCCGTTCGCGGCCAAGGCCGTG CGCATCTACCTCCGCGACGTGCGGGAGGCGCAGGCCAAGGCGCGCGGCATCCCCTACGAG AAGAGGAAGCGCAAGCGCGGAAGCGCGGCCGCGGCGCCTCCAGTTGCGCCGCCTCCTGTT GTAACTGCAGAGACCGCAGGGACCACGTCAGGGACCGTCTGTGACGAGGAGGAGGAACCA TCGCCGTCTGCAGGTGATGAACCACAGAAGCAGACCACCACGCCGACGTCCGCCTCGGCT CCTCCTACAAGTACTTCCAGCGCTAGTGCAAGTAGTAGCAGTGCCGCCGCGGCCACCACG TCGACGACGACGACAAGGAAGGAGGAAGAAGGATCCGCGCCAAGCTCGTGA