Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d010470_T036
CDS Infomation

cds chromosome:B73_RefGen_v4:8:116801111:116818574:-1 gene:Zm00001d010470 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase KEG
Sequence

ATGCGCGTGCCATGCTGCTCGTTATGCAACGTCAGATATGACGAGGAGGAGCGGACGCCG
CTGCTCCTCCACTGCGGCCATGGATTCTGCCGCGCGTGCCTCTCCCGCATGCTAGCGGCA
GCCCCCGGAGCCACGCTGCCGTGCCCGCGATGTCGCCATCCGACCGCCGTAGGCAACTCA
GTCTCTGCGCTGCGGAAGAACTTCCCCATTCTATCGCTCCTCTCCGCATCCCCCTCATCC
CCGTCTTTCCTCCACTCCGACTCGGGGTCATCCTCCGACGGCTCCGAAGATGAGGATGAC
TTCTTCGCACGGCCCACTCGCCGCCCCGCGCCCGCGCCCGCCGCCGCGTCGCCCGGATGC
AGCTCCTTCGACCTCGCCTCGCACCCGGACCTCAAGCTCGCCCGTCGCATCGGGAGCGGC
CCGCCTGGGCCCGCCGGGCAGGACGTGTGGGTCGGCACGCTGTCTCGTGGCGGCGGCGGG
GTCAAGCGGTGCAAGCACCAGGTGGCAGTGAAGAGGGTGCCCCAAACCGCGGGGGATGGG
CTCGAGGTTGTTCAAGAGGAGGTGGAGCGGCTGAGGCGTGCCTCCACATGGTGTCGGAAC
GTGTGCACCTTCCATGGTGCTGTGAGGGTCGGCGGCCACCTCTGTTTCGTGATGGATCAT
TATGTCGGGTCTGTGCAGGCGGAGATGCGGCAGAATGGTGGACGCCTCACGCTGGAGCAG
ATTCTCAGGTATGGGGCTGATATTGCTCGTGGAGTAGCAGAACTCCATGCAGCGGGTATT
GTTTGTATGAGCATAAAGCCGTCAAACATTCTTTTGGATGCTCATGGACATGCAGTCGTT
TCGGATTATGGTCTTTCAGCAATTCTGAAGAATAGGAGAGTTCCTGATGACTCCGGTGCT
GGCATTGATGCTATGCTGCTTAGTCCCAATTATACAGCTCCTGAGGCATGGGGACCACTG
AAGAAGTCACTGAATATGTTTTGGGATAGTGCAAACGGTATATCACCAGAGTCGGATGCA
TGGAGTTTTGGTTGCACGCTCGTGGAAATGTGTACTGGTGCTGTTCCATGGGCTGGACTG
ACTGCAGAGGAGATCTGTAAGTCTGTTGCAAAAGAGAAGAAGCCACCACCTCAATATTCA
AGAGTAGTAGGTGTAGGACTTCCTGGGGAGCTGTGGAAGATGATTGGTGAATGTTTGCAG
TTCCGAGCTTCAAGAAGACCATCCTTCCAGGACATGCTGAAAATTTTCCTTCGACACCTT
CTGGACATACCACGGAGCCCACCTGCTAGTCCTGAGAATGATTTCGCAAATGAAAACTTG
CCCAATGGCATGGAACCTCCAACAACCTCCATCCTAGAGATGGTTCGTTATAATCCAAAT
GCCTTGCATCATCTTGTATGCGAAGGAGATGCTGCTGGTGTTAGGGATCTACTTGCGAAG
GTTGCATCAGAGAGAAATGGTGGTTTCATCCGTTCTCTCTTAGAAGCACAAAATACAGAT
GGACTCACTGCCCTACATTTAGCATGTCGCCGAGGCTCGGCAGAGCTTGTGGAAGCTATT
GTGGCTTACCAAGAGAATGTAGATATATTAGATAAGGATGAAGACCCACCTATAGTATTT
GCTTTGGCTGCTGGCTCTCCACGATGTGTTCGTGCACTTGTAGGCAGGTCTGCTAGTATC
AATTCTAGGCTTAGAGAAGGCCTGGGTCCTACTCTTGCCCATGTCTGTGCTCATCATGGT
CAACCAGAGTGCATGCAAGAGCTGCTGATGGCTGGAGCTGATCCCAACGCAGTAGATGGT
GAAGGTGAATCTGTCCTGCATATTGCCGTGGCCAGGAGATATACTGATTGTGCTATTGCT
ATACTTGAAAATGGAGGCTGCAGATCGATGGGAATATCAAATTCTCAACATAAAACGCCA
TTGCATTTATGTGTTGAGACATGGAACACGACTGTGGTAAGAAGATGGGTTGATGTTGCA
TCTCTAGAGGATATAGCAGAAGCAATTGATGTACCCAGCCCTGTTGGTACAGCTTTATGC
ATGGCAGCAGCTCTTAAAAAGGAGCACGAGAAAGAGGGTCGAGAGTTAGTAAGAATATTG
CTTGCTGCTGGTGCTGATCCTACAGCACAAGATGATCCACACTGTAGAACTGCATTACAT
ACTGCAGCAATGATCAATGACGTGGAGCTTGTTAAGATTATACTGGAAGCAGGAGTCGAT
GTTAATATAAGAAATGCTCAAAATACAACCCCACTCCATGTTGCACTTAATAGAGGTGCA
AACTCGTGTGTTGGCTTGCTTTTAGCATCTGGTGCAAATTGCAACATACAGGATGATGAT
GGTGACAATGCTTTTCACATAGCTGCTGACGCAGCAAAAATGATACGCGAAAACTTGACT
TGGATTGCTCAAATGCTACTACAGCCGTCACCTGCTGTTGATGTGAGAAACCACCGAGGT
TGGACACTACGAGACTTTCTTGAGAGGCTTCCACGAGAATGGATTTATGAAGAATTGATG
GAAATGCTTGAAGATAAAGGAGTTCATCTCTCACCAACCATGTAA

Peptide Sequence

PEP ID

Zm00001d010470_P036
PEP Infomation

pep chromosome:B73_RefGen_v4:8:116801111:116818574:-1 gene:Zm00001d010470 transcript:Zm00001d010470_T036 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase KEG
Sequence

MRVPCCSLCNVRYDEEERTPLLLHCGHGFCRACLSRMLAAAPGATLPCPRCRHPTAVGNS
VSALRKNFPILSLLSASPSSPSFLHSDSGSSSDGSEDEDDFFARPTRRPAPAPAAASPGC
SSFDLASHPDLKLARRIGSGPPGPAGQDVWVGTLSRGGGGVKRCKHQVAVKRVPQTAGDG
LEVVQEEVERLRRASTWCRNVCTFHGAVRVGGHLCFVMDHYVGSVQAEMRQNGGRLTLEQ
ILRYGADIARGVAELHAAGIVCMSIKPSNILLDAHGHAVVSDYGLSAILKNRRVPDDSGA
GIDAMLLSPNYTAPEAWGPLKKSLNMFWDSANGISPESDAWSFGCTLVEMCTGAVPWAGL
TAEEICKSVAKEKKPPPQYSRVVGVGLPGELWKMIGECLQFRASRRPSFQDMLKIFLRHL
LDIPRSPPASPENDFANENLPNGMEPPTTSILEMVRYNPNALHHLVCEGDAAGVRDLLAK
VASERNGGFIRSLLEAQNTDGLTALHLACRRGSAELVEAIVAYQENVDILDKDEDPPIVF
ALAAGSPRCVRALVGRSASINSRLREGLGPTLAHVCAHHGQPECMQELLMAGADPNAVDG
EGESVLHIAVARRYTDCAIAILENGGCRSMGISNSQHKTPLHLCVETWNTTVVRRWVDVA
SLEDIAEAIDVPSPVGTALCMAAALKKEHEKEGRELVRILLAAGADPTAQDDPHCRTALH
TAAMINDVELVKIILEAGVDVNIRNAQNTTPLHVALNRGANSCVGLLLASGANCNIQDDD
GDNAFHIAADAAKMIRENLTWIAQMLLQPSPAVDVRNHRGWTLRDFLERLPREWIYEELM
EMLEDKGVHLSPTM

Transcript Sequence

Transcript ID

Zm00001d010470_T036
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:116801111:116818574:-1 gene:Zm00001d010470 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase KEG
Sequence

GCAGGAACCAGGAGAAAGGTCGGCGGAGCGAGCAGGAAGGGCAACGCAGCGCTGCGTGTT
GCTTGTCGTCCTTCCTTCCCCAGCCTCCCACCGCATCACCACCAACCCTCTACCTCTCAC
TTTCTGAAATTCCCACGTTGCTCTCCCGTCTTCCCTCCTCCCCTCCCCAAACCCCCACCC
CAACGCCCAGATCTACCCTCCCCATTTACAGCTTTCTCTCCGGCCCTGCGCCCCAGGGCA
CCGCGCCGCCCGAAACCGTCGGCGCCGGCGCGATGCGCGTGCCATGCTGCTCGTTATGCA
ACGTCAGATATGACGAGGAGGAGCGGACGCCGCTGCTCCTCCACTGCGGCCATGGATTCT
GCCGCGCGTGCCTCTCCCGCATGCTAGCGGCAGCCCCCGGAGCCACGCTGCCGTGCCCGC
GATGTCGCCATCCGACCGCCGTAGGCAACTCAGTCTCTGCGCTGCGGAAGAACTTCCCCA
TTCTATCGCTCCTCTCCGCATCCCCCTCATCCCCGTCTTTCCTCCACTCCGACTCGGGGT
CATCCTCCGACGGCTCCGAAGATGAGGATGACTTCTTCGCACGGCCCACTCGCCGCCCCG
CGCCCGCGCCCGCCGCCGCGTCGCCCGGATGCAGCTCCTTCGACCTCGCCTCGCACCCGG
ACCTCAAGCTCGCCCGTCGCATCGGGAGCGGCCCGCCTGGGCCCGCCGGGCAGGACGTGT
GGGTCGGCACGCTGTCTCGTGGCGGCGGCGGGGTCAAGCGGTGCAAGCACCAGGTGGCAG
TGAAGAGGGTGCCCCAAACCGCGGGGGATGGGCTCGAGGTTGTTCAAGAGGAGGTGGAGC
GGCTGAGGCGTGCCTCCACATGGTGTCGGAACGTGTGCACCTTCCATGGTGCTGTGAGGG
TCGGCGGCCACCTCTGTTTCGTGATGGATCATTATGTCGGGTCTGTGCAGGCGGAGATGC
GGCAGAATGGTGGACGCCTCACGCTGGAGCAGATTCTCAGGTATGGGGCTGATATTGCTC
GTGGAGTAGCAGAACTCCATGCAGCGGGTATTGTTTGTATGAGCATAAAGCCGTCAAACA
TTCTTTTGGATGCTCATGGACATGCAGTCGTTTCGGATTATGGTCTTTCAGCAATTCTGA
AGAATAGGAGAGTTCCTGATGACTCCGGTGCTGGCATTGATGCTATGCTGCTTAGTCCCA
ATTATACAGCTCCTGAGGCATGGGGACCACTGAAGAAGTCACTGAATATGTTTTGGGATA
GTGCAAACGGTATATCACCAGAGTCGGATGCATGGAGTTTTGGTTGCACGCTCGTGGAAA
TGTGTACTGGTGCTGTTCCATGGGCTGGACTGACTGCAGAGGAGATCTGTAAGTCTGTTG
CAAAAGAGAAGAAGCCACCACCTCAATATTCAAGAGTAGTAGGTGTAGGACTTCCTGGGG
AGCTGTGGAAGATGATTGGTGAATGTTTGCAGTTCCGAGCTTCAAGAAGACCATCCTTCC
AGGACATGCTGAAAATTTTCCTTCGACACCTTCTGGACATACCACGGAGCCCACCTGCTA
GTCCTGAGAATGATTTCGCAAATGAAAACTTGCCCAATGGCATGGAACCTCCAACAACCT
CCATCCTAGAGATGGTTCGTTATAATCCAAATGCCTTGCATCATCTTGTATGCGAAGGAG
ATGCTGCTGGTGTTAGGGATCTACTTGCGAAGGTTGCATCAGAGAGAAATGGTGGTTTCA
TCCGTTCTCTCTTAGAAGCACAAAATACAGATGGACTCACTGCCCTACATTTAGCATGTC
GCCGAGGCTCGGCAGAGCTTGTGGAAGCTATTGTGGCTTACCAAGAGAATGTAGATATAT
TAGATAAGGATGAAGACCCACCTATAGTATTTGCTTTGGCTGCTGGCTCTCCACGATGTG
TTCGTGCACTTGTAGGCAGGTCTGCTAGTATCAATTCTAGGCTTAGAGAAGGCCTGGGTC
CTACTCTTGCCCATGTCTGTGCTCATCATGGTCAACCAGAGTGCATGCAAGAGCTGCTGA
TGGCTGGAGCTGATCCCAACGCAGTAGATGGTGAAGGTGAATCTGTCCTGCATATTGCCG
TGGCCAGGAGATATACTGATTGTGCTATTGCTATACTTGAAAATGGAGGCTGCAGATCGA
TGGGAATATCAAATTCTCAACATAAAACGCCATTGCATTTATGTGTTGAGACATGGAACA
CGACTGTGGTAAGAAGATGGGTTGATGTTGCATCTCTAGAGGATATAGCAGAAGCAATTG
ATGTACCCAGCCCTGTTGGTACAGCTTTATGCATGGCAGCAGCTCTTAAAAAGGAGCACG
AGAAAGAGGGTCGAGAGTTAGTAAGAATATTGCTTGCTGCTGGTGCTGATCCTACAGCAC
AAGATGATCCACACTGTAGAACTGCATTACATACTGCAGCAATGATCAATGACGTGGAGC
TTGTTAAGATTATACTGGAAGCAGGAGTCGATGTTAATATAAGAAATGCTCAAAATACAA
CCCCACTCCATGTTGCACTTAATAGAGGTGCAAACTCGTGTGTTGGCTTGCTTTTAGCAT
CTGGTGCAAATTGCAACATACAGGATGATGATGGTGACAATGCTTTTCACATAGCTGCTG
ACGCAGCAAAAATGATACGCGAAAACTTGACTTGGATTGCTCAAATGCTACTACAGCCGT
CACCTGCTGTTGATGTGAGAAACCACCGAGGTTGGACACTACGAGACTTTCTTGAGAGGC
TTCCACGAGAATGGATTTATGAAGAATTGATGGAAATGCTTGAAGATAAAGGAGTTCATC
TCTCACCAACCATGTAAGGGACTCATGTTGTTTTTTTTCTCGAACACGCAGGAGAACTGC
ACATCATTATATTAAGTAGAGAGAAGGTCTAAAGAAGACCAAGAACAACAGCTATACAAA
AAAAAGGGGGTAAAAAGAGAGAAAAATCAGAAAATAAAGGAGAAAAAGGAAGAAAAAGAA
GGAACAAACAGGGGGGGGGGAAGTGAACCAAGCCCCTAATTTAAGGCCATAGCCTTCTCA
GAGCCTTAGCACCTGCCATCTCCCAAAGCCTGGCATCCTCCTGGATCTGTTGCAGAACCA
TATTCGTGTTTGGGGACTCATGTTGTTTTTCGAGTACTTTAACAAAAACTTCACATATTA
GGTACTTCCACAAACCATACTTGGCAGGTTTTAGCAAAGTTACACTTTTGACATTAGCTA
AACAACACTTTTGGCAAGTCCTTTTAGACAACATACTCTGACCAACTGGCGGGCCTGAGT
GATTTCTGTTTTCCATGATGCTAATATGGAGCTACCACGTCGTCGGCTAAACAAGCCATC
TTGACTGCATGGCATTGAAGGGGAGTAAGGGCTGTTTGCTCCACCCACATCTTTGTATCA
AGCTATCAACAAGCAGGCTATACACCCGACACGCTTGGTCCACCATGACAGTATTCTTAC
GTGCCTCTTACATGAGGGTGGTCCTTTTTGGAATGATATCGACTTATGCATTTTGAATCT
TGCATATAGCTTTGTTAGGAGGTGTTTGGCATGGCTCTAGAGCAAAATTCAAAGGGGAAG
TTGGTCAAAGCTAGCCAAACACCCCAACTCTAGGGTTGCAAACTCTATAGAGTTTTGGGA
GCTGCAGTACAAATTTTTGGAGTATCTCCTTCACTGCTCCTTGTAGTTTTGGAGCAGGCT
AGAGCAGAGCCATGCCAAACACCCCCTTAGTCACACACACATCCACAACCTCTCCCCCTC
AACACACATACGCTTAGGAGAAAAAACACAAACAAGGGACAAATGACAAAGGGGATAGGC
AACACCAAGCAGTGTTCCACAAGGCACACTTAAGTACTAGACAGAGGGCCACTGCCTCGC
CTAAGGGGATAGGTCGAAGGTAGGCGGCATGCCTGCAGATCCAGAGTGGTGCTACATGGC
GGGTGGTGGCGAACACGTCTGGGAGGCAGGGACTTCAGGCCGTGGTGGCGCGCGCGCGGG
GGGGGGGGGGGGGGGTGATGTTGCACTGTCGTGGAGAAGCAAGGACAGTGTACTGCACGG
ACGAGACAAGGACTTTGGGGTGGCGAGTGGCACATATGATGCAGGAACAGGGGCGGCCAG
TTATGACTTGCGAATCGTGGTCAAAGCTGGGAGACCAAGGGATAAGGCTTGCTGCTCACT
GCTCAGACTTGGCCGATGGTTTTGTCTTTCATACCAGAAATTCTTAGAGAAAACACAAGA
AACCAGTAGACCTCGCCGATGGTTTTGTCTTTCTGATCACATAGCAAACATTTCTGGTGA
TGCTGTAGACCTCGCCGAGCACGACAATCTTCAGTCCAGCACTTACTATGGGTGACCAAT
CACATGAAAAAACCGATATTTGTTAGGACTTAGGAGCCCTGGTAGTCTAAAAAATACTGA
CATTTTCAACAGATAAGTGTTGCAGAAATGCATATGTTGTGTTGGATTTGTGTCCATATA
ATAAGGGATCAAATCCGAAATGATGATGTATGTGATAGGCTAGGGGTAGCACCAATTGAA
GAAAATGTTGTCTAACACCGGTTGAGATGGTTTAGACATTTTTTCGAACACGTGGGAGAA
CCACGTATCAATATATTAAGAAGAC