Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d010216_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:8:104484073:104490847:1 gene:Zm00001d010216 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 27
Sequence

ATGAATTTCAGTTGGATGAAGATCTTCTTTAGGCAATTAGAGGAGTCTGGAGTTCTTAAC
GGGGCCCTTAAAGCTCAAGGCAATTCATGGGGCTTGCACATGCCACTCGTTTGTCCAGAT
GGTGCTGTTGTAGCTTATGCTTGGAAGCGTCAACTAGCAGGTCAGGCTGGTGCATCTGCT
GTGGACAGGACTAGGTTAGCTCTCAAGGCTTTCACTGACCAGAAAAGAAGATTCTTTCCT
CATCTAGAAGATGAAGTTGTTAGCCATCTCCATGATGGTCAACCTGGTGACACCAAAAAG
TCAAAGTTGTTTACCAGCAATGGATATCTAGAGGAAAAATCTTTGTCTGAAATACTGAAA
AATTTAGAACATGAAGTACCTAACATAAAAATATTCACATACTGGCATCTGGATTGGTCA
AAAAGAGCTTCATCATTAGCATCTCTGTTGGATGATGACTTTGTGGATCCATCTAAAGAG
CTGAACCTGCAAAATATGGACAAATCGAGATCTGATGCTCTGACAACTACCATAGACCAA
GTTGCTGTTATTGAATTGCTGGTTCCTTCAATATTTAGAGCTGTAGTGTCATTGCATCCT
GCTGGATCTACTGATCCTGATGCAGTGGCATTCTTCTCTCCCACTGAGGGAGGAAGCTAT
CTTCATGCAAGGGGCACATCGGTACATCATGTGTTTAAGCATGTAAAAGAACATGCTGAC
AAGGCATTGCAGTACTTCATCAATGCGGAGCCGAGTAAAGCACTACCTCTTCTTTTGCGT
TGGATTGCCAGCTATCAGACTCTGTTTACGAAGGTTTGCAGCAAATGCAGACGGCTTCTG
ATGATGGACAAGTCTTTGGCTTTGCTGTTGCCTCCTGTCCACCGCCCCTATCACCAGACT
TCAAATGTTGGACCAGATCTTCAAGAGGCCTACCACATTGGATGTTCCTCCTACGATGGC
TAG

Peptide Sequence

PEP ID

Zm00001d010216_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:8:104484073:104490847:1 gene:Zm00001d010216 transcript:Zm00001d010216_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 27
Sequence

MNFSWMKIFFRQLEESGVLNGALKAQGNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASA
VDRTRLALKAFTDQKRRFFPHLEDEVVSHLHDGQPGDTKKSKLFTSNGYLEEKSLSEILK
NLEHEVPNIKIFTYWHLDWSKRASSLASLLDDDFVDPSKELNLQNMDKSRSDALTTTIDQ
VAVIELLVPSIFRAVVSLHPAGSTDPDAVAFFSPTEGGSYLHARGTSVHHVFKHVKEHAD
KALQYFINAEPSKALPLLLRWIASYQTLFTKVCSKCRRLLMMDKSLALLLPPVHRPYHQT
SNVGPDLQEAYHIGCSSYDG

Transcript Sequence

Transcript ID

Zm00001d010216_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:104484073:104490847:1 gene:Zm00001d010216 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 27
Sequence

AGGCCTGGAATTCGGAGGCCCAGGAATCATGATGCAGCAGGCTCAGGCGCACACCTCGGC
ACTTGCGGGAGCGCCGTCGGCGTCGGCGGTGGCACCGACGGTGGCTCACCCGCACGATCC
GGTGGGCGGGGATGCGCCGCCGAAGCAGGTGGCTCAGGCGATGGAGCGGCTGGGCCGTGC
TGGCCGGTTCATCGCGGACATCCGGCTCGGCGCGGACCGCCTCCTCGAGGCTCTTTTCGT
CTCCGGCGACGCGCCCCCGTACAGCGTGCGCCAGCACGTCGACAGGATGGAGCGTATTAT
CGTCAAGGAGGATGCCGCCATGCGCCTCCACTTTCAGGACCTACGCGCCCTCGGCAGAGT
TTGGTCGTCGCCATCAGGATAATGTTGAGGTGATCTTCCCAGAATCACAAGTTGTGGGCA
GCGGTAATGAATTTCAGTTGGATGAAGATCTTCTTTAGGCAATTAGAGGAGTCTGGAGTT
CTTAACGGGGCCCTTAAAGCTCAAGGCAATTCATGGGGCTTGCACATGCCACTCGTTTGT
CCAGATGGTGCTGTTGTAGCTTATGCTTGGAAGCGTCAACTAGCAGGTCAGGCTGGTGCA
TCTGCTGTGGACAGGACTAGGTTAGCTCTCAAGGCTTTCACTGACCAGAAAAGAAGATTC
TTTCCTCATCTAGAAGATGAAGTTGTTAGCCATCTCCATGATGGTCAACCTGGTGACACC
AAAAAGTCAAAGTTGTTTACCAGCAATGGATATCTAGAGGAAAAATCTTTGTCTGAAATA
CTGAAAAATTTAGAACATGAAGTACCTAACATAAAAATATTCACATACTGGCATCTGGAT
TGGTCAAAAAGAGCTTCATCATTAGCATCTCTGTTGGATGATGACTTTGTGGATCCATCT
AAAGAGCTGAACCTGCAAAATATGGACAAATCGAGATCTGATGCTCTGACAACTACCATA
GACCAAGTTGCTGTTATTGAATTGCTGGTTCCTTCAATATTTAGAGCTGTAGTGTCATTG
CATCCTGCTGGATCTACTGATCCTGATGCAGTGGCATTCTTCTCTCCCACTGAGGGAGGA
AGCTATCTTCATGCAAGGGGCACATCGGTACATCATGTGTTTAAGCATGTAAAAGAACAT
GCTGACAAGGCATTGCAGTACTTCATCAATGCGGAGCCGAGTAAAGCACTACCTCTTCTT
TTGCGTTGGATTGCCAGCTATCAGACTCTGTTTACGAAGGTTTGCAGCAAATGCAGACGG
CTTCTGATGATGGACAAGTCTTTGGCTTTGCTGTTGCCTCCTGTCCACCGCCCCTATCAC
CAGACTTCAAATGTTGGACCAGATCTTCAAGAGGCCTACCACATTGGATGTTCCTCCTAC
GATGGCTAGCTGATGCTTCTAAGATGTTCCTGACATTGTCATTGACATAGTACGTGTACA
ACAGTCCTGTGTGAAACAATGTTCTTTTTTTTTTGGAATGTATCCAACCCATTAGGTGAC
ATATGTATAGAAACGTTACTGGTTGCTTAGGTACTTGAAGTTCTACGCTCTTGC