Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d010212_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:8:104219169:104225767:1 gene:Zm00001d010212 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase

Sequence

ATGGCCGCGGCGGAGATAGTCGTCGTCGCCGTCGTGACCTTGCTTCTCGGGCTAACGTCG
TGCATGGCAGAGAGTTCGGTATGGAGGGAGGAGGACCGGCGCGTCCGAGGAGAGGTGACG
TACGAGCAGAGGGCCCTGGTGCTGGACGGCGCCAGGAGGATGCTGTTCGCCGGGGAGATG
CACTACCCAAGGAGCACGCCGGAGATGTGGCCAAAACTCATTGCTAAAGCAAAGGAGGGC
GGGCTTGACGTGATACAGACCTACGTATTCTGGAACGTTCATGAGCCTATCCAGGGCCAG
TACAACTTCGAGGGAAGATATGATCTTGTCAGGTTCATCAAGGAAATTCAAGCTCAGGGT
CTCTACGTAAGCCTCAGGATCGGTCCCTTCATAGAGTCTGAATGGAAATATGGAGGATTT
CCATTTTGGCTACATGATGTCCCAAACATTACCTTCCGAAGTGATAACGAACCCTTTAAG
CAACACATGCAAAGATTTGTTACAGATATAGTAAATATGATGAAACATGAAGGACTTTAC
TACCCACAAGGAGGTCCCATTATAACTTCTCAGATTGAGAACGAATACCAAATGGTTGAG
CCTGCATTTGGCTCAAGTGGGCAACGTTACGTCAGTTGGGCAGCTGCAATGGCTGTAGAC
CTTCAAACAGGTGTTCCCTGGACGATGTGCAAGCAAAACGATGCTCCAGATCCAGTTGTC
GGTATTCATTCCTATACTATTCCAGTTAACTTCCAAAATGATAGCAGAAACTATCTTATA
TACGGCAACGATACAAAATTGAGGTCTCCACAAGATATCACCTTTGCAGTTGCATTATTT
ATAGCAAGGAAAAATGGAAGCTATGTGAGCTACTACATGTATCACGGAGGAACAAACTTT
GGGAGGTTTGCTTCTTCATATGTAACAACAAGCTACTACGATGGAGCTCCTCTTGATGAA
TATGGTTTGATATGGCAACCAACATGGGGTCATCTCAGAGAACTGCATGCTGCAGTAAAA
CAGTCATCAGAACCACTACTATTTGGGACATACTCCAATCTTTCTATAGGTCAAGAACAA
GAGGCACATATCTTCGAAACAGAAACTCAATGTGTGGCTTTCCTAGTCAACTTTGATCAG
CATCATATATCAGAAGTAGTATTTCGTAATATATCACTGGAACTGGCCCCAAAATCAATC
AGCATTCTCTTAGATTGTAAGCAGGTAGTTTTTGAAACAGCTAAGGTAAATGCTCAGCAT
GGATCAAGAACAGCTGAAGAAGTGCAGTCTTTTAGTGACATTAGTACTTGGAAGGCATTC
AAGGAACCAATTCCTCAAGATGTGAGTAAATCTGCATACAGTGGAAACCGACTCTTTGAA
CATCTATCAACTACTAAAGATGCTACCGATTATCTATGGTACATTGTTGGCTATGAATAT
ACACCGAGTGATGATGGCCAACTTGTGTTGATTAATGTTGAGTCACGAGCACATATATTG
CATGCCTTTGTCAACAATGCATATGTGGGTAGAATACATGGAAGCCATGGTGGACCTGCC
AATATAATTTTCAGCACAAATATTTCTCTACAGGAAGGACCAAACACCATATCATTGCTA
AGTGCTATGGTTGGATCACCGGATTCGGGTGCTCATATGGAAAGGAGAGTATTTGGAATT
AGGAAAGTGAGCATACAACAGGGACAAGAGCCAGAAAATCTGCTCAACAATGAGCTATGG
GGGTACCAAGTTGGCTTATTCGGGGAAAGGAATAACATCTACACACAAGATTCAAAAATT
ACTGAATGGACAACTATCGACAATTTGACATATAGCCCACTTACTTGGTACAAGACTACA
TTTTCCACACCAGTGGGAAATGACGCAGTGACACTGAACCTTACTGGTATGGGTAAGGGT
GAAGTATGGGTCAATGGAGAGAGTATCGGACGATATTGGGTCTCTTTCAAGGCTCCTAGT
GGCAATCCTTCGCAATCACTGTATCACATACCACGAGAATTTCTAAACCCTCAAGACAAT
ACCCTAGTCCTTTTTGAGGAAATGGGAGGCAACCCACAGCTAATAACAGTGAACACAATG
TCGGTATCAAGAGTGTGTGGCAATGTGAATGAGCTCTCAGCTCCATCACTTCAATATAAG
GATAAGGAACCAGCAGTAGATCTCTGGTGTCCAGAAGGCAAACATATATCAGCAATTGAG
TTTGCAAGCTACGGAGGTCCTACGGGTGACTGCAAAAAATTTGGTTTCGGAAGATGCCAT
GCAGGATCATCAGAATCTGTTGTAAAACAGGCTTGCTTGGGTAAAAGTGGATGCTCTGTT
CCCGTAACACCTATCAAATTTGGAGGCGATCCATGTCCTGGAATCCAAAAATCTCTTCTA
GTTGTGGCGAACTACAGGTGA

Peptide Sequence

PEP ID

Zm00001d010212_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:8:104219169:104225767:1 gene:Zm00001d010212 transcript:Zm00001d010212_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase

Sequence

MAAAEIVVVAVVTLLLGLTSCMAESSVWREEDRRVRGEVTYEQRALVLDGARRMLFAGEM
HYPRSTPEMWPKLIAKAKEGGLDVIQTYVFWNVHEPIQGQYNFEGRYDLVRFIKEIQAQG
LYVSLRIGPFIESEWKYGGFPFWLHDVPNITFRSDNEPFKQHMQRFVTDIVNMMKHEGLY
YPQGGPIITSQIENEYQMVEPAFGSSGQRYVSWAAAMAVDLQTGVPWTMCKQNDAPDPVV
GIHSYTIPVNFQNDSRNYLIYGNDTKLRSPQDITFAVALFIARKNGSYVSYYMYHGGTNF
GRFASSYVTTSYYDGAPLDEYGLIWQPTWGHLRELHAAVKQSSEPLLFGTYSNLSIGQEQ
EAHIFETETQCVAFLVNFDQHHISEVVFRNISLELAPKSISILLDCKQVVFETAKVNAQH
GSRTAEEVQSFSDISTWKAFKEPIPQDVSKSAYSGNRLFEHLSTTKDATDYLWYIVGYEY
TPSDDGQLVLINVESRAHILHAFVNNAYVGRIHGSHGGPANIIFSTNISLQEGPNTISLL
SAMVGSPDSGAHMERRVFGIRKVSIQQGQEPENLLNNELWGYQVGLFGERNNIYTQDSKI
TEWTTIDNLTYSPLTWYKTTFSTPVGNDAVTLNLTGMGKGEVWVNGESIGRYWVSFKAPS
GNPSQSLYHIPREFLNPQDNTLVLFEEMGGNPQLITVNTMSVSRVCGNVNELSAPSLQYK
DKEPAVDLWCPEGKHISAIEFASYGGPTGDCKKFGFGRCHAGSSESVVKQACLGKSGCSV
PVTPIKFGGDPCPGIQKSLLVVANYR

Transcript Sequence

Transcript ID

Zm00001d010212_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:104219169:104225767:1 gene:Zm00001d010212 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase

Sequence

GACTGCAAGGAACTAACTGGTCCGGGAGGTGCAGGCAGGAGAGGCGAGCTGACCGATCGA
TCACCAGGGGATACCGTACCGTGGCGTGGTGGGGGAGAGAGAGAGCGAGATGGCCGCGGC
GGAGATAGTCGTCGTCGCCGTCGTGACCTTGCTTCTCGGGCTAACGTCGTGCATGGCAGA
GAGTTCGGTATGGAGGGAGGAGGACCGGCGCGTCCGAGGAGAGGTGACGTACGAGCAGAG
GGCCCTGGTGCTGGACGGCGCCAGGAGGATGCTGTTCGCCGGGGAGATGCACTACCCAAG
GAGCACGCCGGAGATGTGGCCAAAACTCATTGCTAAAGCAAAGGAGGGCGGGCTTGACGT
GATACAGACCTACGTATTCTGGAACGTTCATGAGCCTATCCAGGGCCAGTACAACTTCGA
GGGAAGATATGATCTTGTCAGGTTCATCAAGGAAATTCAAGCTCAGGGTCTCTACGTAAG
CCTCAGGATCGGTCCCTTCATAGAGTCTGAATGGAAATATGGAGGATTTCCATTTTGGCT
ACATGATGTCCCAAACATTACCTTCCGAAGTGATAACGAACCCTTTAAGCAACACATGCA
AAGATTTGTTACAGATATAGTAAATATGATGAAACATGAAGGACTTTACTACCCACAAGG
AGGTCCCATTATAACTTCTCAGATTGAGAACGAATACCAAATGGTTGAGCCTGCATTTGG
CTCAAGTGGGCAACGTTACGTCAGTTGGGCAGCTGCAATGGCTGTAGACCTTCAAACAGG
TGTTCCCTGGACGATGTGCAAGCAAAACGATGCTCCAGATCCAGTTGTCGGTATTCATTC
CTATACTATTCCAGTTAACTTCCAAAATGATAGCAGAAACTATCTTATATACGGCAACGA
TACAAAATTGAGGTCTCCACAAGATATCACCTTTGCAGTTGCATTATTTATAGCAAGGAA
AAATGGAAGCTATGTGAGCTACTACATGTATCACGGAGGAACAAACTTTGGGAGGTTTGC
TTCTTCATATGTAACAACAAGCTACTACGATGGAGCTCCTCTTGATGAATATGGTTTGAT
ATGGCAACCAACATGGGGTCATCTCAGAGAACTGCATGCTGCAGTAAAACAGTCATCAGA
ACCACTACTATTTGGGACATACTCCAATCTTTCTATAGGTCAAGAACAAGAGGCACATAT
CTTCGAAACAGAAACTCAATGTGTGGCTTTCCTAGTCAACTTTGATCAGCATCATATATC
AGAAGTAGTATTTCGTAATATATCACTGGAACTGGCCCCAAAATCAATCAGCATTCTCTT
AGATTGTAAGCAGGTAGTTTTTGAAACAGCTAAGGTAAATGCTCAGCATGGATCAAGAAC
AGCTGAAGAAGTGCAGTCTTTTAGTGACATTAGTACTTGGAAGGCATTCAAGGAACCAAT
TCCTCAAGATGTGAGTAAATCTGCATACAGTGGAAACCGACTCTTTGAACATCTATCAAC
TACTAAAGATGCTACCGATTATCTATGGTACATTGTTGGCTATGAATATACACCGAGTGA
TGATGGCCAACTTGTGTTGATTAATGTTGAGTCACGAGCACATATATTGCATGCCTTTGT
CAACAATGCATATGTGGGTAGAATACATGGAAGCCATGGTGGACCTGCCAATATAATTTT
CAGCACAAATATTTCTCTACAGGAAGGACCAAACACCATATCATTGCTAAGTGCTATGGT
TGGATCACCGGATTCGGGTGCTCATATGGAAAGGAGAGTATTTGGAATTAGGAAAGTGAG
CATACAACAGGGACAAGAGCCAGAAAATCTGCTCAACAATGAGCTATGGGGGTACCAAGT
TGGCTTATTCGGGGAAAGGAATAACATCTACACACAAGATTCAAAAATTACTGAATGGAC
AACTATCGACAATTTGACATATAGCCCACTTACTTGGTACAAGACTACATTTTCCACACC
AGTGGGAAATGACGCAGTGACACTGAACCTTACTGGTATGGGTAAGGGTGAAGTATGGGT
CAATGGAGAGAGTATCGGACGATATTGGGTCTCTTTCAAGGCTCCTAGTGGCAATCCTTC
GCAATCACTGTATCACATACCACGAGAATTTCTAAACCCTCAAGACAATACCCTAGTCCT
TTTTGAGGAAATGGGAGGCAACCCACAGCTAATAACAGTGAACACAATGTCGGTATCAAG
AGTGTGTGGCAATGTGAATGAGCTCTCAGCTCCATCACTTCAATATAAGGATAAGGAACC
AGCAGTAGATCTCTGGTGTCCAGAAGGCAAACATATATCAGCAATTGAGTTTGCAAGCTA
CGGAGGTCCTACGGGTGACTGCAAAAAATTTGGTTTCGGAAGATGCCATGCAGGATCATC
AGAATCTGTTGTAAAACAGGCTTGCTTGGGTAAAAGTGGATGCTCTGTTCCCGTAACACC
TATCAAATTTGGAGGCGATCCATGTCCTGGAATCCAAAAATCTCTTCTAGTTGTGGCGAA
CTACAGGTGACACTAGACAGTCACACAAGTATACATCATAGAAAAGAAGTTGGACGAGTA
TAAAAAATAAAAAGATGAGTTACAAAATCAACGAGCAATAGAGTGGAGGGAAAGTATAAG
TCAAAACATATAGTAATTGTTATTAGGTAGGCAATTGATCACTTGAGGCTTAGTTGGTAG
ACCCCATGTACCGATTGTTTTGACCTGGCATAGATATGTGTTATCTGTATA