Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d010173_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:8:102966206:102970709:1 gene:Zm00001d010173 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polypyrimidine tract-binding protein homolog 3
Sequence

ATGTCAGAGCCGTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAGTCT
GATCTCCTTCAGCTGCTGCAGCCGTTCGGCATGGTCTCCAAGATCGTCATGTTGCGTGCC
AAGAACCAAGCTCTTCTGCAGATGGAAGACCTCCATGCTTCCGTGAGCGCGCTGCAATAT
TACACTTCTGTTCAACCTAGCATAAGGGGAAGGAATGTATACATGCAGTTCTCATCTCAC
CAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAGGGGTCCGAACCC
AACCGAATACTTTTAGTTACTATCCACCATATGATCTATCCTATAACAGTGGAGATTCTA
CATCAAGTATTCAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCT
GGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCT
TTGCATGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAATCTC
AGTGAACTGCAAGTCCACTACAACAACGACCGATCTAGAGATTTCACAAATCCATCGTTG
CCTACAGAACAACGTCCTAGGGCCTCTCAGCAAGGTTATCTTGACCCAGCTAATCTCTAT
GCCTTCCAACAAGCTGGAGCTTCATATGCACAGATGGGGAGGGTTGCAATGATTGCGGCT
GCATTTGGTGGAACTTTACCTCATGGAGTGACTGGTACCAATGAACGGTGCACACTCATC
GTCAGTAATCTGAATACTGATAAAATTGATGAGGATAAGCTTTTCAATCTGTTTTCCTTG
TATGGAAACATAGTACGAATCAAGATACTGCGTAACAAACCAGATCATGCACTTGTTGAG
ATGGCTGATGGGTTGCAGGCAGAGCTAGCTGTGCATTATTTGAAGGGGTCTATACTATTT
GGGAAGAAACTGGAAGTTAACTACTCAAAGTATCCTAACATCACACCTGCTCCTGACGCC
CACGACTACTTAAACTCAAGCATAAACCGGTTCAACAGCAACGTGGTCAAGAACTACCGA
CATTGCTGCTCTCCAACGAAGATGATCCACATTTCTGCCCTCCCTCAAGATATCTCTGAG
GAAGCAATCCTGAACCATGTGTCTGAGCACGGCACTGTTCTCAACACGAAGCTATTCGAG
GTGAATGGCAAGAGGCAGGCTCTCATTTTGTTCAAGAGCGAAGAGGAGGCTACCGAGGCC
CTCGTGTCAAAGCATGCCAGCACGCTCGAGGGTAACACGATCCGGATCTCTTTCTCCCAG
ATGCAGAGTATATAA

Peptide Sequence

PEP ID

Zm00001d010173_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:8:102966206:102970709:1 gene:Zm00001d010173 transcript:Zm00001d010173_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polypyrimidine tract-binding protein homolog 3
Sequence

MSEPSKVIHIRNVGHEIAESDLLQLLQPFGMVSKIVMLRAKNQALLQMEDLHASVSALQY
YTSVQPSIRGRNVYMQFSSHQELTTDQSSHGRNSDQGSEPNRILLVTIHHMIYPITVEIL
HQVFKAYGFVEKIVTFQKSAGFQALIQYHSRQEAVEAFGSLHGRNIYDGCCQLDIQYSNL
SELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYLDPANLYAFQQAGASYAQMGRVAMIAA
AFGGTLPHGVTGTNERCTLIVSNLNTDKIDEDKLFNLFSLYGNIVRIKILRNKPDHALVE
MADGLQAELAVHYLKGSILFGKKLEVNYSKYPNITPAPDAHDYLNSSINRFNSNVVKNYR
HCCSPTKMIHISALPQDISEEAILNHVSEHGTVLNTKLFEVNGKRQALILFKSEEEATEA
LVSKHASTLEGNTIRISFSQMQSI

Transcript Sequence

Transcript ID

Zm00001d010173_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:102966206:102970709:1 gene:Zm00001d010173 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polypyrimidine tract-binding protein homolog 3
Sequence

CCCCTCCCTTCTCTCTCTCTTCGCCGCAGCGTCAGCCGACGGCAAAACCCTAGATCTCTC
TCCCTCTTAAACCCTCTCAACAAGGTAATGTTTGTTGCCAGAAGATTGGAGCTTTGGCTG
TAGATCTCTCTTCTCCCCGTTTCCTCGATAGTTTCGCGACCGACCAATTTCTTGGTGATT
TTTGGCTGTTGCCTGTGTTACAGTGCGGGAGGATGTCAGAGCCGTCCAAGGTAATCCACA
TCCGCAACGTCGGGCACGAGATTGCCGAGTCTGATCTCCTTCAGCTGCTGCAGCCGTTCG
GCATGGTCTCCAAGATCGTCATGTTGCGTGCCAAGAACCAAGCTCTTCTGCAGATGGAAG
ACCTCCATGCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAGGG
GAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGACCAGAGCTCTC
ATGGAAGGAATTCTGATCAGGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACC
ATATGATCTATCCTATAACAGTGGAGATTCTACATCAAGTATTCAAAGCTTATGGATTTG
TGGAGAAGATTGTCACATTTCAAAAGTCAGCTGGTTTTCAAGCTCTTATTCAGTATCACT
CGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCATGGAAGGAACATATACGATGGTT
GCTGCCAACTAGATATTCAATATTCAAATCTCAGTGAACTGCAAGTCCACTACAACAACG
ACCGATCTAGAGATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTC
AGCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAGCTTCATATG
CACAGATGGGGAGGGTTGCAATGATTGCGGCTGCATTTGGTGGAACTTTACCTCATGGAG
TGACTGGTACCAATGAACGGTGCACACTCATCGTCAGTAATCTGAATACTGATAAAATTG
ATGAGGATAAGCTTTTCAATCTGTTTTCCTTGTATGGAAACATAGTACGAATCAAGATAC
TGCGTAACAAACCAGATCATGCACTTGTTGAGATGGCTGATGGGTTGCAGGCAGAGCTAG
CTGTGCATTATTTGAAGGGGTCTATACTATTTGGGAAGAAACTGGAAGTTAACTACTCAA
AGTATCCTAACATCACACCTGCTCCTGACGCCCACGACTACTTAAACTCAAGCATAAACC
GGTTCAACAGCAACGTGGTCAAGAACTACCGACATTGCTGCTCTCCAACGAAGATGATCC
ACATTTCTGCCCTCCCTCAAGATATCTCTGAGGAAGCAATCCTGAACCATGTGTCTGAGC
ACGGCACTGTTCTCAACACGAAGCTATTCGAGGTGAATGGCAAGAGGCAGGCTCTCATTT
TGTTCAAGAGCGAAGAGGAGGCTACCGAGGCCCTCGTGTCAAAGCATGCCAGCACGCTCG
AGGGTAACACGATCCGGATCTCTTTCTCCCAGATGCAGAGTATATAAGCCACCTCAAGGG
AAAGCCCCTGCCGTCCTCACTCGCCCCACTTCGAGCTCTATTTAGGAAGCATTTCAGACT
AAGATGTGAATCCTGTGCACCATTCTCCAAGACTGATGCTGTCTGAGCTGTACCTCCCCT
GACCTTGTTTTTTTTTTCACGCAACACTGGACTTTCACCAAAAGGTTTGTGTTTCTTTCC
AAATCCTGTTGGTTAGGATATCATTTACTCCTTAATCTTCATGTCCTGACATTCTAAGTT
GGAAGGCCTGTTAATTGCGTGTGAATTATATTATCCTTTTGCCTG