Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d010121_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:8:100027537:100029612:1 gene:Zm00001d010121 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGGCAGCCGCCTCCGCCTCCACGCGACAAGCGACGGCGGAGGCGTGCAGTAGCCACGTC
CACCACGCGCACCTCGCGGCTCTCCTCAACGCTTCCGCGCGCTTGCCTCCGCTCCCTCTC
AGCCGCCTCCACCTCCCGCTCTCGCTCCCCACGGCCTCCCGCCTCGTCGCGTCCTTCCCT
CCACTCCCGCTCCTCGTCTGCTTCCTCCGCGCGCTCCGCCTCCTCCCCTCCTCGCCGCCG
CGCCCCTTTGACTCGCTCATCAAGTCATATGCCTCGCTCCCCAACCGCGCCTCCCTCGCT
GCTGCGGCGCTCGCGTTCGCCAGGTCAGCCGGGTACGTGCCCTCTGTGCTCGCCTACAAC
GCCGTCCTCCTCGCGCTCTCTGACGCGTCGCTCACCTCCGCTAGGCGCTTCTTCGACTCC
ATGCTTAGCGACGGCGTGGCGCCCAACGTGTACACCTACAACATCCTCATCCGCGCGCTG
TGCGGCCGCGGACACCGGAAAGAGGCGCTCAGCATCTTGCGTGACATGCGCGGCGCAGGT
TGCGGCCCCAATGTCGTGACTTACAACACGCTCGTCGCGGCGTTCTTCAGAGCCGGGGAG
GTGGATGGCGCGGAGAGGCTGGTCGGCATGATGCTTGACGGCGGCTTGAAGCCCAACCTG
GTGACTTTCAATTCAATGGTGAATGGGATGTGCAAGGCTGGGAAGATGGAGGACGCACGC
AAGGTGTTCGATGAAATGATGAGGGAGGGTTTGGCGCCGGATGGGGTCAGTTACAACACC
TTAGTGGGTGGGTATTGCAAGGCAGGGTGCTCGCATGAGGCATTGTCTGTGTTTGCAGAG
ATGACACAGAAAGGGATCATGCCAGACGTCGTGACATTTACGTCATTGATCCATGTAATG
TGCAAGGCTGGGAACTTGGAGTGGGCAGTGACATTGGTGAGGCAGATGAGGGAGAGGGGC
CTCCAGATGAATGAGGTCACTTTTACAGCCTTGATAGATGGGTTCTGCAAGAAGGGATTC
TTGGATGATGCATTGCTTGCAGTAAGGGGGATGAGGCAATGCAGAATAAAGCCTTCAGTG
GTGTGTTATAATGCACTTATTAATGGTTATTGTATGGTAGGAAGAATGGATGAAGCAAGA
GAGTTACTCCATGAAATGGAAGCTAAAGGACTGAAGCCTGACGTTGTGACATACAGTACG
ATTATCAGTGCGTACTGTAAGAATTGTGATACACATTCTGCATTCGAATTGAACCAACAG
ATGCTTGAGAAGGGTGTTCTTCCAGATGCAATCACCTACTCATCACTCATAAGGGTTCTT
TGTGAGGAGAAACGACTCAGTGACGCTCATGTGCTCTTCAAAAATATGATTAAGCTTGGC
CTACAACCTGATGAATTTACATACACATCTCTTATTGATGGCCACTGCAAGGAGGGTAAT
GTGGAGAGGGCTCTTTCTCTGCACGATAAAATGGTAAAGGCAGGAGTTCTTCCTGATGTT
GTGACTTACAGTGTGCTTATTAATGGGCTTAGTAAATCAGCACGTGCTATGGAAGCACAA
CAGTTGCTCTTCAAATTGTACCATGAAGAGCCAATTCCAGCAAATACTAAATATGATGCC
CTGATGCATTGTTGTAGAAAAGCTGAGCTTAAGAGTGTGTTAGCTCTCTTGAAGGGATTT
TGCATGAAAGGTTTAATGAATGAAGCTGATAAAGTTTATCAATCAATGTTAGACAGAAAC
TGGAATCTTGACGGGTCTGTCTACAGTGTGCTTATTCATGGGCATTGTAGGGCAGGAAAT
GTTATGAAGGCTCTCAGCTTCCATAAGCAAATGCTGCAGCGTGGTTTTGCTCCAAATTCA
ACAAGCACGATTTCCTTGATTAGGGGTCTATTTGAAAATGGGATGGTTGTAGAAGCAGAT
CAGGTGATTCAGCAGTTGTTGAACTGTTGTTCCCTTGCTGATGCAGAAGCATCAAAGGCT
CTTATTGACCTCAACTTAAATGAAGGTAATGTGGACGCAGTCTTAGACGTTCTGCATGGC
ATGGCAAAGGATGGACTGCTTCCAAGTCCAAGATGA

Peptide Sequence

PEP ID

Zm00001d010121_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:8:100027537:100029612:1 gene:Zm00001d010121 transcript:Zm00001d010121_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MAAASASTRQATAEACSSHVHHAHLAALLNASARLPPLPLSRLHLPLSLPTASRLVASFP
PLPLLVCFLRALRLLPSSPPRPFDSLIKSYASLPNRASLAAAALAFARSAGYVPSVLAYN
AVLLALSDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAG
CGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDAR
KVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVM
CKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSV
VCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQ
MLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGN
VERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDA
LMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGN
VMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKA
LIDLNLNEGNVDAVLDVLHGMAKDGLLPSPR

Transcript Sequence

Transcript ID

Zm00001d010121_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:100027537:100029612:1 gene:Zm00001d010121 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGGCAGCCGCCTCCGCCTCCACGCGACAAGCGACGGCGGAGGCGTGCAGTAGCCACGTC
CACCACGCGCACCTCGCGGCTCTCCTCAACGCTTCCGCGCGCTTGCCTCCGCTCCCTCTC
AGCCGCCTCCACCTCCCGCTCTCGCTCCCCACGGCCTCCCGCCTCGTCGCGTCCTTCCCT
CCACTCCCGCTCCTCGTCTGCTTCCTCCGCGCGCTCCGCCTCCTCCCCTCCTCGCCGCCG
CGCCCCTTTGACTCGCTCATCAAGTCATATGCCTCGCTCCCCAACCGCGCCTCCCTCGCT
GCTGCGGCGCTCGCGTTCGCCAGGTCAGCCGGGTACGTGCCCTCTGTGCTCGCCTACAAC
GCCGTCCTCCTCGCGCTCTCTGACGCGTCGCTCACCTCCGCTAGGCGCTTCTTCGACTCC
ATGCTTAGCGACGGCGTGGCGCCCAACGTGTACACCTACAACATCCTCATCCGCGCGCTG
TGCGGCCGCGGACACCGGAAAGAGGCGCTCAGCATCTTGCGTGACATGCGCGGCGCAGGT
TGCGGCCCCAATGTCGTGACTTACAACACGCTCGTCGCGGCGTTCTTCAGAGCCGGGGAG
GTGGATGGCGCGGAGAGGCTGGTCGGCATGATGCTTGACGGCGGCTTGAAGCCCAACCTG
GTGACTTTCAATTCAATGGTGAATGGGATGTGCAAGGCTGGGAAGATGGAGGACGCACGC
AAGGTGTTCGATGAAATGATGAGGGAGGGTTTGGCGCCGGATGGGGTCAGTTACAACACC
TTAGTGGGTGGGTATTGCAAGGCAGGGTGCTCGCATGAGGCATTGTCTGTGTTTGCAGAG
ATGACACAGAAAGGGATCATGCCAGACGTCGTGACATTTACGTCATTGATCCATGTAATG
TGCAAGGCTGGGAACTTGGAGTGGGCAGTGACATTGGTGAGGCAGATGAGGGAGAGGGGC
CTCCAGATGAATGAGGTCACTTTTACAGCCTTGATAGATGGGTTCTGCAAGAAGGGATTC
TTGGATGATGCATTGCTTGCAGTAAGGGGGATGAGGCAATGCAGAATAAAGCCTTCAGTG
GTGTGTTATAATGCACTTATTAATGGTTATTGTATGGTAGGAAGAATGGATGAAGCAAGA
GAGTTACTCCATGAAATGGAAGCTAAAGGACTGAAGCCTGACGTTGTGACATACAGTACG
ATTATCAGTGCGTACTGTAAGAATTGTGATACACATTCTGCATTCGAATTGAACCAACAG
ATGCTTGAGAAGGGTGTTCTTCCAGATGCAATCACCTACTCATCACTCATAAGGGTTCTT
TGTGAGGAGAAACGACTCAGTGACGCTCATGTGCTCTTCAAAAATATGATTAAGCTTGGC
CTACAACCTGATGAATTTACATACACATCTCTTATTGATGGCCACTGCAAGGAGGGTAAT
GTGGAGAGGGCTCTTTCTCTGCACGATAAAATGGTAAAGGCAGGAGTTCTTCCTGATGTT
GTGACTTACAGTGTGCTTATTAATGGGCTTAGTAAATCAGCACGTGCTATGGAAGCACAA
CAGTTGCTCTTCAAATTGTACCATGAAGAGCCAATTCCAGCAAATACTAAATATGATGCC
CTGATGCATTGTTGTAGAAAAGCTGAGCTTAAGAGTGTGTTAGCTCTCTTGAAGGGATTT
TGCATGAAAGGTTTAATGAATGAAGCTGATAAAGTTTATCAATCAATGTTAGACAGAAAC
TGGAATCTTGACGGGTCTGTCTACAGTGTGCTTATTCATGGGCATTGTAGGGCAGGAAAT
GTTATGAAGGCTCTCAGCTTCCATAAGCAAATGCTGCAGCGTGGTTTTGCTCCAAATTCA
ACAAGCACGATTTCCTTGATTAGGGGTCTATTTGAAAATGGGATGGTTGTAGAAGCAGAT
CAGGTGATTCAGCAGTTGTTGAACTGTTGTTCCCTTGCTGATGCAGAAGCATCAAAGGCT
CTTATTGACCTCAACTTAAATGAAGGTAATGTGGACGCAGTCTTAGACGTTCTGCATGGC
ATGGCAAAGGATGGACTGCTTCCAAGTCCAAGATGA