Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d009983_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:8:93324376:93339948:-1 gene:Zm00001d009983 gene_biotype:protein_coding transcript_biotype:protein_coding description:Binding protein
Sequence

ATGGCGGCGGCGGCGGCGGCGGGCGCGGCATCTTCCATCCTCTCGTCCACGCCCCCGCGC
CGCCTCACCTTCCCTCCCGCCCACATCCGCAAACCCCTCGCCGCGGCCGCCCCCAAGGCC
CTCAACCTGTCATCGCAGAAACTCCCCCCGCTCTCTTCATCTGCCACGGCCTCGCCACCA
CCTCCGCCCGACGGGGACGATAAGCCGGACCCCATCAAGCTCGCTTTCGCCCGCGCTGCC
GCATACAAGAAGGGGAGGGACAGTCACAGCCCGAGCCCGAGCCCGGCGCCGGCCCCGCCT
CCCACGCCGCCGCCACAGTCTTCACCACCGTCGCAGCCGCAGGCTTCGGTCAGTGAGCCC
GGCAGTAAGGAGGCTTTTAAGCGGGCGTTGGAGTACCGAAACGGCAACGGGGCCGGAGCG
GGCGCGGCTGGTGGTGACTCCCCGCTGCTGGGAGGCTCGCCGGATTTTGGTCAGAATGCC
CTAATTAGTGAAGAAGTCTCGTTTGGCAAGAGAGGAGGGTACGAGTTTGATGAGGCTGAT
TTTTTGGGTCTCGACTTCTTTGAGAAAAAACGTTCTAAAGGTCTACCACCTGGGCTGGCT
CCAGCTTTTGAGCCTTTACGAGATGACGATTTTCCTGAGGTGGACATAATAGTTGGAGAC
CCCAGCAAATTTGACAAGTCTCCTCGCCGAACTGAAATCCAACCGGTAGACAACGGGGAG
TCAGGGGAAGCATCTCAATCGACTACTAAACCAAATGAAGCTGACAAGGCTGGGATAGCA
CCCCCTTCAACTGTTATTGAGACTGAAGAAGATGAAGATGTTTATAGACCCACAGTTAGA
TCATGGGGAATGTTTCCGAGGCCACAAAATATTTCAAAGGCGTATGGCGGTGGAAGAAAT
ATACGCCTTGGTGGAGAGACTCAAAGTGCAGAAGAAAAGGCAGCCAAAGATAAGCGCACC
AAAGAGCTAATAGCTGCATATAGGAATCGACAGAACATGGTAATCGATGCAAAGACAAAA
GCAGAGTGCATCAAGGACTTCTATGTAATGGATGGGATTTTCATCTTTGCTTTAATGCAC
ATGTATTTGTTACGTATTTGTAAAATTGTCATATGGAAGGCCTTGAGGGAAGGTGATGAG
ATGATGAATACTGGAAGGCTTAAACAAGCATTACCTTATTATGAAAAAGTGATGGACGCT
GTGGACTTTAAGACTGAATTTCATGGAAGGGCTGCTCTGCAATGGTCCATCTGTCTTGAT
TCACTTTGCAGGTCCAAGGAAGCAATGAGCATGTATAGCAAACTTAAAAACCACCCGAAT
AGTGAGATCAGCAAGAAAGCAAACATGTTCGTGTTCAGCTTTCAGGCAATGGATTTCATG
AAGGTGAGCAGCATTCCAGTGCCCAAAAGCACAGGCTACGAGACGTACTTCACCAAATTT
GGCAGCAAGAAGAATTACTACGCGAGCTTAGAAGAGCCGGAGGTGGGAATCGAGCAGATC
GTCCCGTACATCATCTTTCTTGTTTCGCCGATATTTTTAGTTGCTTTTGTTGCACTGAGA
AAATCCTTCCAACTATGA

Peptide Sequence

PEP ID

Zm00001d009983_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:8:93324376:93339948:-1 gene:Zm00001d009983 transcript:Zm00001d009983_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Binding protein
Sequence

MAAAAAAGAASSILSSTPPRRLTFPPAHIRKPLAAAAPKALNLSSQKLPPLSSSATASPP
PPPDGDDKPDPIKLAFARAAAYKKGRDSHSPSPSPAPAPPPTPPPQSSPPSQPQASVSEP
GSKEAFKRALEYRNGNGAGAGAAGGDSPLLGGSPDFGQNALISEEVSFGKRGGYEFDEAD
FLGLDFFEKKRSKGLPPGLAPAFEPLRDDDFPEVDIIVGDPSKFDKSPRRTEIQPVDNGE
SGEASQSTTKPNEADKAGIAPPSTVIETEEDEDVYRPTVRSWGMFPRPQNISKAYGGGRN
IRLGGETQSAEEKAAKDKRTKELIAAYRNRQNMVIDAKTKAECIKDFYVMDGIFIFALMH
MYLLRICKIVIWKALREGDEMMNTGRLKQALPYYEKVMDAVDFKTEFHGRAALQWSICLD
SLCRSKEAMSMYSKLKNHPNSEISKKANMFVFSFQAMDFMKVSSIPVPKSTGYETYFTKF
GSKKNYYASLEEPEVGIEQIVPYIIFLVSPIFLVAFVALRKSFQL

Transcript Sequence

Transcript ID

Zm00001d009983_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:93324376:93339948:-1 gene:Zm00001d009983 gene_biotype:protein_coding transcript_biotype:protein_coding description:Binding protein
Sequence

GCCTCGAGTCTTCCCCGCGCCGCGCGGGCAACGGATAACAAACGCTCGGCTTGTCGCCGT
CCGTCCCCTGCCGCCACCCATCACCTGCTATCCCGCCGGGATCGTACGCCAATTCGCCAA
AACGATGGCGGCGGCGGCGGCGGCGGGCGCGGCATCTTCCATCCTCTCGTCCACGCCCCC
GCGCCGCCTCACCTTCCCTCCCGCCCACATCCGCAAACCCCTCGCCGCGGCCGCCCCCAA
GGCCCTCAACCTGTCATCGCAGAAACTCCCCCCGCTCTCTTCATCTGCCACGGCCTCGCC
ACCACCTCCGCCCGACGGGGACGATAAGCCGGACCCCATCAAGCTCGCTTTCGCCCGCGC
TGCCGCATACAAGAAGGGGAGGGACAGTCACAGCCCGAGCCCGAGCCCGGCGCCGGCCCC
GCCTCCCACGCCGCCGCCACAGTCTTCACCACCGTCGCAGCCGCAGGCTTCGGTCAGTGA
GCCCGGCAGTAAGGAGGCTTTTAAGCGGGCGTTGGAGTACCGAAACGGCAACGGGGCCGG
AGCGGGCGCGGCTGGTGGTGACTCCCCGCTGCTGGGAGGCTCGCCGGATTTTGGTCAGAA
TGCCCTAATTAGTGAAGAAGTCTCGTTTGGCAAGAGAGGAGGGTACGAGTTTGATGAGGC
TGATTTTTTGGGTCTCGACTTCTTTGAGAAAAAACGTTCTAAAGGTCTACCACCTGGGCT
GGCTCCAGCTTTTGAGCCTTTACGAGATGACGATTTTCCTGAGGTGGACATAATAGTTGG
AGACCCCAGCAAATTTGACAAGTCTCCTCGCCGAACTGAAATCCAACCGGTAGACAACGG
GGAGTCAGGGGAAGCATCTCAATCGACTACTAAACCAAATGAAGCTGACAAGGCTGGGAT
AGCACCCCCTTCAACTGTTATTGAGACTGAAGAAGATGAAGATGTTTATAGACCCACAGT
TAGATCATGGGGAATGTTTCCGAGGCCACAAAATATTTCAAAGGCGTATGGCGGTGGAAG
AAATATACGCCTTGGTGGAGAGACTCAAAGTGCAGAAGAAAAGGCAGCCAAAGATAAGCG
CACCAAAGAGCTAATAGCTGCATATAGGAATCGACAGAACATGGTAATCGATGCAAAGAC
AAAAGCAGAGTGCATCAAGGACTTCTATGTAATGGATGGGATTTTCATCTTTGCTTTAAT
GCACATGTATTTGTTACGTATTTGTAAAATTGTCATATGGAAGGCCTTGAGGGAAGGTGA
TGAGATGATGAATACTGGAAGGCTTAAACAAGCATTACCTTATTATGAAAAAGTGATGGA
CGCTGTGGACTTTAAGACTGAATTTCATGGAAGGGCTGCTCTGCAATGGTCCATCTGTCT
TGATTCACTTTGCAGGTCCAAGGAAGCAATGAGCATGTATAGCAAACTTAAAAACCACCC
GAATAGTGAGATCAGCAAGAAAGCAAACATGTTCGTGTTCAGCTTTCAGGCAATGGATTT
CATGAAGGTGAGCAGCATTCCAGTGCCCAAAAGCACAGGCTACGAGACGTACTTCACCAA
ATTTGGCAGCAAGAAGAATTACTACGCGAGCTTAGAAGAGCCGGAGGTGGGAATCGAGCA
GATCGTCCCGTACATCATCTTTCTTGTTTCGCCGATATTTTTAGTTGCTTTTGTTGCACT
GAGAAAATCCTTCCAACTATGAACAGAAATCATGGACGAGTTGCTGAGGTTTTAATACCG
TATAGGAGCACATAGCTTGGCAATAGAAGATTATTATTATGATTTTTTTGTTTTCATCAA
AAGAGCAAATTATTTTGTG