Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d009872_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:8:86437806:86440261:1 gene:Zm00001d009872 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-binding protein BRN1
Sequence

ATGCTACCAAAAAATGTAACAGATGCTGAAATGATAGATTTATTTTCAAAATATGGGAAT
ATCAAGGATTTGCAGATTTTGAGAGGTTCTCAACAAACGAGCAAAGCTGGCTGTGCCTTT
CTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTATAGAAGCTCTAAATGGAACACAC
AAAATAGAGGGTTCAAGTGTTCCCTTGGTTGTCAAATGGGCTGACACTGAAAAGGAAAGG
CAAGCTCGAAAAGCGCAAAAATCTCCATTCCAGTCTTCTAACATGTTGAATGCAAATGCT
ATGCGGCAGAATTCAGTGTTTGGAGCTCTACAGATGGGATATGTGCCGCAGTACAATGGA
TTTGGCTACCAGCCACAAGGAACCTACGGGCTTATGCAATACCCACCTCTATCTCCTGTG
CAAAATCAAGCTGCCTTCCAGAATATGGTCCAGCCTATTAATCAAGCAAGCTCGACCCGT
GGAGCTAATTCTGAACTTCCCCCTGATTTAGTTCCTAGATCATTTAATTCCACACAGTTG
GGAAGCCCCTATTCGCCTCTGCCTGGCTTGCAGTATCCTGGAGTGTATCCTGGTGGCCCT
ATTAATCATCGCCCCTTTTCAAATTCTCACAGTTCAACCAAAGTTCAAAATTTAAATGCT
AATTTACCGTCTTCAAGTCCCAGCAGCAATCCTGCCCCCCAGATAGAGGGCCCTCCTGGA
GCCAATTTGTTCATATATCACATTCCACAAGAATTTGGTGACCATGATCTTGCAAATGCA
TTTCATAGTTTTGGTAGAGTACTGAGTGCTAAAGTTTTTGTAGACAAGGCAACTGGTGTT
AGTAAATGCTTTGGTTTCGTAAGCTACGATTCTCCAGCTTCTGCACAAGCAGCCATTAGT
GTGATGAATGGATACCAATTAGGTGGTAAAAAGTTGAAAGTTCAACTCAAGAGAGACAAC
AGCAAGCACAGTAAACCTTTCTGA

Peptide Sequence

PEP ID

Zm00001d009872_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:8:86437806:86440261:1 gene:Zm00001d009872 transcript:Zm00001d009872_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-binding protein BRN1
Sequence

MLPKNVTDAEMIDLFSKYGNIKDLQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGTH
KIEGSSVPLVVKWADTEKERQARKAQKSPFQSSNMLNANAMRQNSVFGALQMGYVPQYNG
FGYQPQGTYGLMQYPPLSPVQNQAAFQNMVQPINQASSTRGANSELPPDLVPRSFNSTQL
GSPYSPLPGLQYPGVYPGGPINHRPFSNSHSSTKVQNLNANLPSSSPSSNPAPQIEGPPG
ANLFIYHIPQEFGDHDLANAFHSFGRVLSAKVFVDKATGVSKCFGFVSYDSPASAQAAIS
VMNGYQLGGKKLKVQLKRDNSKHSKPF

Transcript Sequence

Transcript ID

Zm00001d009872_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:86437806:86440261:1 gene:Zm00001d009872 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-binding protein BRN1
Sequence

AGAGCACAAGCTCTTTGTTGGAATGCTACCAAAAAATGTAACAGATGCTGAAATGATAGA
TTTATTTTCAAAATATGGGAATATCAAGGATTTGCAGATTTTGAGAGGTTCTCAACAAAC
GAGCAAAGCTGGCTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTAT
AGAAGCTCTAAATGGAACACACAAAATAGAGGGTTCAAGTGTTCCCTTGGTTGTCAAATG
GGCTGACACTGAAAAGGAAAGGCAAGCTCGAAAAGCGCAAAAATCTCCATTCCAGTCTTC
TAACATGTTGAATGCAAATGCTATGCGGCAGAATTCAGTGTTTGGAGCTCTACAGATGGG
ATATGTGCCGCAGTACAATGGATTTGGCTACCAGCCACAAGGAACCTACGGGCTTATGCA
ATACCCACCTCTATCTCCTGTGCAAAATCAAGCTGCCTTCCAGAATATGGTCCAGCCTAT
TAATCAAGCAAGCTCGACCCGTGGAGCTAATTCTGAACTTCCCCCTGATTTAGTTCCTAG
ATCATTTAATTCCACACAGTTGGGAAGCCCCTATTCGCCTCTGCCTGGCTTGCAGTATCC
TGGAGTGTATCCTGGTGGCCCTATTAATCATCGCCCCTTTTCAAATTCTCACAGTTCAAC
CAAAGTTCAAAATTTAAATGCTAATTTACCGTCTTCAAGTCCCAGCAGCAATCCTGCCCC
CCAGATAGAGGGCCCTCCTGGAGCCAATTTGTTCATATATCACATTCCACAAGAATTTGG
TGACCATGATCTTGCAAATGCATTTCATAGTTTTGGTAGAGTACTGAGTGCTAAAGTTTT
TGTAGACAAGGCAACTGGTGTTAGTAAATGCTTTGGTTTCGTAAGCTACGATTCTCCAGC
TTCTGCACAAGCAGCCATTAGTGTGATGAATGGATACCAATTAGGTGGTAAAAAGTTGAA
AGTTCAACTCAAGAGAGACAACAGCAAGCACAGTAAACCTTTCTGACACAGCGAATTCAT
TGTATGCTCACATGATCAGGAAAATCGGTACATACTATGTTTCACAATTGATTATTACAT
TGTTTCCTCTGGCTCTTGTATCTTTGTTCAATTCACATCCTTGAAAACTGTCACATCGTG
TATTTTTATCGCAGCATAGTTGTAGCATTTGTACCATTAGATCTTGTACATCAGACATTA
ATTCATTCAATTCTTTATTTTTAATTTTCATCATGAATCATTTTATTGTAAATAATCTTC
TAGGATTTACGATATGGCATGTTTCAGTGTTTGTTGTCCTT