Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d009771_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:8:80434251:80440706:1 gene:Zm00001d009771 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium permeable stress-gated cation channel 1
Sequence

ATGGCTTCCCTTGGTGACATAGGCCTCGCCGCGGGTCTCAACGTATTGACCGCCGTTGCC
TTCTTGCTCGCATTTGCATTCCTTCGGCTGCAGCCAATCAACGACAGGGTCTACTTTCCT
AAATGGTACCTCAGGGGAATGAGAGACAATCCAATCGTATCTGGTGCAGCTGTGCAAAAG
TTTGTTAACTTAGACGCCAGATCCTACTTGAAGTTTTTAAACTGGATGCCAGCTGCTCTC
AAGATGCCCCAGGATGAGCTCATTAACCATGCAGGCCTTGATTCTGTGGTCTACCTACGG
ATATACGTAACAGGGCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTG
GTCCCAGTCAATTGGACCAATGACACCCTAGGACGCATCAACGTAGTCTACAGTCCTATT
GACAAACTTTCGATATCTAATGTACCTAATGGGTCGAAGAGGTTTATAGCTCACTTGGGC
ATGGCTTATGCCATCACATTTTGGACCTGTTATGTACTGTTGAAGGAGTATGAAATTATT
TCTAACATGAGGCTGCGCTTTCTAGCTTCAGAGAAACGCCGACCAGATCAGTTCACTGTC
CTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTC
TTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGGTGGTTTACAACGCAAATAAA
CTTGCTGATCTGGTTGAAAAGAAGAAGAAGATGCGAAATTGGCTTGACTATTACCTACTA
AAGTATGAGCGAAATTCATCATTGAGGCCTACCACAAAGACTGGCTTTCTTGGATGTTTT
GGTTCCAAGGTGGATGCTATTGACTATTACAAATCAGAGATCGAGAAAATCGGGAAACAG
GAAGCTGAAGAGCGTAAGAATGTCATGAAGGATCCAAAATCAGTTGTGCCGGCAGCCTTT
GTCTCATTTCGCTCCCGATGGGGTGCAGCAGTCTGTGCTCAGACCCAGCAAACAAGCAAT
CCAACACTCTGGTTGACAGAATGGGCTCCGGAACCTCGTGATGTTTATTGGAATAATCTG
TCCATCCCATTTGTGTCCCTTACAATTAGGAGATTGATAGTTGCTGTGGCATTCTTCTTC
CTTAACTTCTTTTACGTCATCCCAATAACATTCGTACAGTCTCTTGCAAACCTTGAAGGA
ATAGAGAAGGCACTTCCATTTCTAAAACCCTTGATTGACTTGCCATTCATTAAATCATTC
ATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATA
CTGATGTTTATGTCTAAATTTGAAGGACTGATATCGCAGTCATCTCTGGAGAGGCGATCT
GCATCTAAGTATTACATATTCTTGTTCTTCAATGTATTTTTGGGGAGCGTAATTGCAGGA
TCTGCTCTGGAGCAGCTTAAAACTTATCTCCATACATCAGCAAACGACATACCAAGGATC
ATTGGTGACTCCATCCCAATGAAGGCGACTTTTTTCATAACATATGTGATGGTTGATGGT
TGGACTGGAATAGCTGGTGAAATATTGAGACTGAAGCCGCTTATATTCTTCCATCTGAAG
AACTTTTTCTTGGTCAAAACCGAAAAGGACAGAGAAGAAGCTATGGACCCTGGCAGTATC
TGCTTTGACTCAACTGAACCTAGAATACAGTTGTACTTCTTGCTTGGCCTTGTTTATGCT
GCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTC
TTCCGCCACCAGATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGG
CCTAGCGTTCATGGGCGTATAATCACAGCGTTGATTGTATCGCAACTGCTGCTCCTGGGA
CTGATGAGCACGAACGACTTTGAGCAGACGACACCTGTGCTCCTTGTTCTTCCTGTGCTG
ACCTTTGGGTTTTACAAGTACTGCAAGAACCGCTTTGAGCCGGCATTCGTGAGGAACCCG
CTGCAGGAGGCGATGAAGAAGGACACCCTAGAACGCGCCCGGGAGCCCAACTTGGATCTG
AAGGCGTACCTGGCCAACTCGTACCTGCACCCGGTGTTCAAGGGGGACGAAGGCGACGAC
AGGTACTCGGTGATGGACGACGATGGGTGGATGGAGGAGGAGGTGATCGTGCCGACGAAG
CGGCATTCGAGGAGGACGACGCCCGCGCAGAGCAAGCATGAAGGGTCGGACTCGCTCTCT
GTGCTCGAGAGTTCTCTACAGCGGTAG

Peptide Sequence

PEP ID

Zm00001d009771_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:8:80434251:80440706:1 gene:Zm00001d009771 transcript:Zm00001d009771_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium permeable stress-gated cation channel 1
Sequence

MASLGDIGLAAGLNVLTAVAFLLAFAFLRLQPINDRVYFPKWYLRGMRDNPIVSGAAVQK
FVNLDARSYLKFLNWMPAALKMPQDELINHAGLDSVVYLRIYVTGLKIFVPITVLAFLVL
VPVNWTNDTLGRINVVYSPIDKLSISNVPNGSKRFIAHLGMAYAITFWTCYVLLKEYEII
SNMRLRFLASEKRRPDQFTVLVRNIPPDPDESISELVEHFFLVNHPDHYLQHQVVYNANK
LADLVEKKKKMRNWLDYYLLKYERNSSLRPTTKTGFLGCFGSKVDAIDYYKSEIEKIGKQ
EAEERKNVMKDPKSVVPAAFVSFRSRWGAAVCAQTQQTSNPTLWLTEWAPEPRDVYWNNL
SIPFVSLTIRRLIVAVAFFFLNFFYVIPITFVQSLANLEGIEKALPFLKPLIDLPFIKSF
IQGFLPGIALKIFLIVLPTILMFMSKFEGLISQSSLERRSASKYYIFLFFNVFLGSVIAG
SALEQLKTYLHTSANDIPRIIGDSIPMKATFFITYVMVDGWTGIAGEILRLKPLIFFHLK
NFFLVKTEKDREEAMDPGSICFDSTEPRIQLYFLLGLVYAAVTPFLLPFILVFFGFAYVV
FRHQIINVYNQQYESAAQFWPSVHGRIITALIVSQLLLLGLMSTNDFEQTTPVLLVLPVL
TFGFYKYCKNRFEPAFVRNPLQEAMKKDTLERAREPNLDLKAYLANSYLHPVFKGDEGDD
RYSVMDDDGWMEEEVIVPTKRHSRRTTPAQSKHEGSDSLSVLESSLQR

Transcript Sequence

Transcript ID

Zm00001d009771_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:80434251:80440706:1 gene:Zm00001d009771 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium permeable stress-gated cation channel 1
Sequence

CTCCCTCATTTGATGGTGATGCGTCCGTCCGTTCAGCTTCGCAAATCCTCTCAGCCCTTG
CGGTGCCCGGTACGGAGTTAGAGGGCAAGCATGGCTTCCCTTGGTGACATAGGCCTCGCC
GCGGGTCTCAACGTATTGACCGCCGTTGCCTTCTTGCTCGCATTTGCATTCCTTCGGCTG
CAGCCAATCAACGACAGGGTCTACTTTCCTAAATGGTACCTCAGGGGAATGAGAGACAAT
CCAATCGTATCTGGTGCAGCTGTGCAAAAGTTTGTTAACTTAGACGCCAGATCCTACTTG
AAGTTTTTAAACTGGATGCCAGCTGCTCTCAAGATGCCCCAGGATGAGCTCATTAACCAT
GCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGGGCTCAAGATATTTGTT
CCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCCAGTCAATTGGACCAATGACACCCTA
GGACGCATCAACGTAGTCTACAGTCCTATTGACAAACTTTCGATATCTAATGTACCTAAT
GGGTCGAAGAGGTTTATAGCTCACTTGGGCATGGCTTATGCCATCACATTTTGGACCTGT
TATGTACTGTTGAAGGAGTATGAAATTATTTCTAACATGAGGCTGCGCTTTCTAGCTTCA
GAGAAACGCCGACCAGATCAGTTCACTGTCCTTGTGCGGAATATACCACCAGATCCTGAT
GAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTA
CAACACCAGGTGGTTTACAACGCAAATAAACTTGCTGATCTGGTTGAAAAGAAGAAGAAG
ATGCGAAATTGGCTTGACTATTACCTACTAAAGTATGAGCGAAATTCATCATTGAGGCCT
ACCACAAAGACTGGCTTTCTTGGATGTTTTGGTTCCAAGGTGGATGCTATTGACTATTAC
AAATCAGAGATCGAGAAAATCGGGAAACAGGAAGCTGAAGAGCGTAAGAATGTCATGAAG
GATCCAAAATCAGTTGTGCCGGCAGCCTTTGTCTCATTTCGCTCCCGATGGGGTGCAGCA
GTCTGTGCTCAGACCCAGCAAACAAGCAATCCAACACTCTGGTTGACAGAATGGGCTCCG
GAACCTCGTGATGTTTATTGGAATAATCTGTCCATCCCATTTGTGTCCCTTACAATTAGG
AGATTGATAGTTGCTGTGGCATTCTTCTTCCTTAACTTCTTTTACGTCATCCCAATAACA
TTCGTACAGTCTCTTGCAAACCTTGAAGGAATAGAGAAGGCACTTCCATTTCTAAAACCC
TTGATTGACTTGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTG
AAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTTGAAGGACTG
ATATCGCAGTCATCTCTGGAGAGGCGATCTGCATCTAAGTATTACATATTCTTGTTCTTC
AATGTATTTTTGGGGAGCGTAATTGCAGGATCTGCTCTGGAGCAGCTTAAAACTTATCTC
CATACATCAGCAAACGACATACCAAGGATCATTGGTGACTCCATCCCAATGAAGGCGACT
TTTTTCATAACATATGTGATGGTTGATGGTTGGACTGGAATAGCTGGTGAAATATTGAGA
CTGAAGCCGCTTATATTCTTCCATCTGAAGAACTTTTTCTTGGTCAAAACCGAAAAGGAC
AGAGAAGAAGCTATGGACCCTGGCAGTATCTGCTTTGACTCAACTGAACCTAGAATACAG
TTGTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATA
TTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGATAATAAATGTCTATAAT
CAGCAATATGAGAGCGCCGCACAGTTCTGGCCTAGCGTTCATGGGCGTATAATCACAGCG
TTGATTGTATCGCAACTGCTGCTCCTGGGACTGATGAGCACGAACGACTTTGAGCAGACG
ACACCTGTGCTCCTTGTTCTTCCTGTGCTGACCTTTGGGTTTTACAAGTACTGCAAGAAC
CGCTTTGAGCCGGCATTCGTGAGGAACCCGCTGCAGGAGGCGATGAAGAAGGACACCCTA
GAACGCGCCCGGGAGCCCAACTTGGATCTGAAGGCGTACCTGGCCAACTCGTACCTGCAC
CCGGTGTTCAAGGGGGACGAAGGCGACGACAGGTACTCGGTGATGGACGACGATGGGTGG
ATGGAGGAGGAGGTGATCGTGCCGACGAAGCGGCATTCGAGGAGGACGACGCCCGCGCAG
AGCAAGCATGAAGGGTCGGACTCGCTCTCTGTGCTCGAGAGTTCTCTACAGCGGTAGTCA
CAGTAGGAGCTTAGCCTGTACAGAATGGATGAAAATGATCACGGCCCTGCTCCATTGCTT
TTGCTTTGGTTGTTGGTTGTTCATGTCACAGGGGACACACACACACAGATAGAATTCAAG
AGAGCTGTGGGGAGGACTGAGGGGAGAGATAGTTTACTGTAGCTTGGACAAAGAATCTGA
ATACAGCAGTTACATTATCTGATGAATCTGTTAGCACCATCCATCTCTAGCTAGAGTTCT
CTACAACTGCAGTTACATACATCACCTGGCCTGCCTGCTCTCCCTACCATTCTGGTAACC
GGAGAACAAGCAAGCAAGAAGAAAACAAAGAATGCTATGCTCAGACGTCAAAATTCTTGC
CGGATCAGTGAGTCAGTGCATAGAGATCAGTCATGCCACCTGAGGAGCATGACGACGCAT
CTCATGGCGATGTACACCTTGGCCCTCTGCTCCCTGAGAGATCTGCCGAACCCTCCAGCT
CCAGCGGCTGCTCGGCTCCCAGCCGCCTTGGTCTTCATCCTCAGGCTTCCTTACTAACTT
GTGCGACAGAAGCGGCAATGGCAGAATAGGTTAGCTTAGCTTGCTGCGATATGTTGGTTC
AGGCAGCTTGACATGGCCATGTCTCTTTATATAGCTAGAGCTAGCTACAGGCTTAAGCAG
ACAGAGCTGCAGGACAGGAGTAAGTATTATTAGTGAGTGAGTTAGTTGCAAGTGAGCATA
TAATCAATTGCAGGCCCCGAGGAGCGTCATGTGGGCATCAGTGGCAACCCACGCCTGCAT
GCCGCCGCACCATCCGACATGACAGTGAAAACTTGCGCTTCTGTATATTTTAACTGCAGT
GGCCTCCATGATCCGATTCCTCTTGTCGGCTGCGAGTCATGCACATGATCCTGATGCTTG
GACGTACCCGTTTTAGGAGGCAGAGAGCACCTTCATTGCATCTTCGTCCCTGAAGCTTGC
ACTGTCAGCAGAGAGTGCTAACTGTGGGACCAACTGAATTAATGAAGGTGAAATTCGAC