Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d009733_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:8:78516311:78519823:1 gene:Zm00001d009733 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATGTCGCCATGGAAAGGGCGGCTGCGCTCTCACCACGCGACCCCTCAAAGTTTTCCCAAG
AGGAGGCCCCCTTCCCAGACCAAGAACCCGGAGGAGAAAGAGGAGCTCCAAACATGTAAG
AAGCATACTGCCCGCAAGAAGACCGCGAGAGGTCGCCACGCTGGAGCTGCTGCACAGCAG
CCCAGGGCTCTCTTACGCGGGTCGTCGCGGCTCGCTGGAAGAGACCATGAGCATCCAATT
ATGATAGACGATGATGTAAACGAGGAATGTAAATCTAGGGCTGATAATCAGCAATTACAC
CTCTCCGCAGGAAAGAGGAAGAGAGGAACAGAAAGGAGGTTGTTATCGAAGAAGCAAAGT
TGCCAGGACCCTGGACCATTCTCTGCGTATCACCAAGAAATTGCATCTTGCAATGAATCC
AGAAAATCCACCCACAGAAGGATTGAAAATGACCCTTCTACCGAGGTGAAGCTTAAAGTT
GGTGATGTGAGATTGGCAAACATTGATGAAAACATCAACAAGCCCAGTGGGACTGAGAGA
GAAGGAATAGAATTTTTTTGTGGTCCTGATGATGGGACAAAAGAGCAGGACATGGCATTG
CGCAAAGCTTACTTCAGTGCCCGACCATCCCCACATTTCTGGAAGAGGGTTTCAAAAATG
GTGCCAGGGAGATCTGCTGAAGATTGCTTCAACAGAATTTATACTGACCTCTCAACACCG
ACTCCAATTGCCCCACGTCCCAGAGCAAATTCTCTAGGCAAGCACAGTGGAAGGTCTTCA
GCACGAAAGAAACCATTTTCAAGGTTAAGAACTAAATCATCTGATCCCAGCCCAGGAGTT
CTAAAGCCTATAAAGAATGTTATCCTACATGAGAGGTACATTGATAAATTGGCACGTAGA
GAAGGAGCAAAAAGGCCTCGCAGAAGGGCTCCAGCTGGCTCTAAAGCTGCTGATTCTGGG
AAGTCTCTTTCTGAGCAGCAAGCTGGTAGTCTGAAGGCTGCTAAAAATGCTCTCATCTCA
GAAGCAACCGACTTCATAAGCAGTTTTAAGACGCTGCAAGCCAATTCGCTTGCGCATGCT
GTGGAGAATAGTGAAGACGAGATTGAATGTGATGCCAGTAATTGTAGCCATGATGATAAA
GAATAA

Peptide Sequence

PEP ID

Zm00001d009733_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:8:78516311:78519823:1 gene:Zm00001d009733 transcript:Zm00001d009733_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

MSPWKGRLRSHHATPQSFPKRRPPSQTKNPEEKEELQTCKKHTARKKTARGRHAGAAAQQ
PRALLRGSSRLAGRDHEHPIMIDDDVNEECKSRADNQQLHLSAGKRKRGTERRLLSKKQS
CQDPGPFSAYHQEIASCNESRKSTHRRIENDPSTEVKLKVGDVRLANIDENINKPSGTER
EGIEFFCGPDDGTKEQDMALRKAYFSARPSPHFWKRVSKMVPGRSAEDCFNRIYTDLSTP
TPIAPRPRANSLGKHSGRSSARKKPFSRLRTKSSDPSPGVLKPIKNVILHERYIDKLARR
EGAKRPRRRAPAGSKAADSGKSLSEQQAGSLKAAKNALISEATDFISSFKTLQANSLAHA
VENSEDEIECDASNCSHDDKE

Transcript Sequence

Transcript ID

Zm00001d009733_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:78516311:78519823:1 gene:Zm00001d009733 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

CGGCAATCTCTTCTCCCGTCTGCCCCGCGCTCTCCTCTCTCTCTTTCTCTCGTGGCGCAA
CTGGGTGGCCGCCGCCCTACGCCAGGTGCCTTTGCCGGTCTTCGTCAGGCCGGTTGTCGG
CGACGAGCACCCACCAGAGCTATTGGTTGAACATGTGTACACACCAATGTCGCCATGGAA
AGGGCGGCTGCGCTCTCACCACGCGACCCCTCAAAGTTTTCCCAAGAGGAGGCCCCCTTC
CCAGACCAAGAACCCGGAGGAGAAAGAGGAGCTCCAAACATGTAAGAAGCATACTGCCCG
CAAGAAGACCGCGAGAGGTCGCCACGCTGGAGCTGCTGCACAGCAGCCCAGGGCTCTCTT
ACGCGGGTCGTCGCGGCTCGCTGGAAGAGACCATGAGCATCCAATTATGATAGACGATGA
TGTAAACGAGGAATGTAAATCTAGGGCTGATAATCAGCAATTACACCTCTCCGCAGGAAA
GAGGAAGAGAGGAACAGAAAGGAGGTTGTTATCGAAGAAGCAAAGTTGCCAGGACCCTGG
ACCATTCTCTGCGTATCACCAAGAAATTGCATCTTGCAATGAATCCAGAAAATCCACCCA
CAGAAGGATTGAAAATGACCCTTCTACCGAGGTGAAGCTTAAAGTTGGTGATGTGAGATT
GGCAAACATTGATGAAAACATCAACAAGCCCAGTGGGACTGAGAGAGAAGGAATAGAATT
TTTTTGTGGTCCTGATGATGGGACAAAAGAGCAGGACATGGCATTGCGCAAAGCTTACTT
CAGTGCCCGACCATCCCCACATTTCTGGAAGAGGGTTTCAAAAATGGTGCCAGGGAGATC
TGCTGAAGATTGCTTCAACAGAATTTATACTGACCTCTCAACACCGACTCCAATTGCCCC
ACGTCCCAGAGCAAATTCTCTAGGCAAGCACAGTGGAAGGTCTTCAGCACGAAAGAAACC
ATTTTCAAGGTTAAGAACTAAATCATCTGATCCCAGCCCAGGAGTTCTAAAGCCTATAAA
GAATGTTATCCTACATGAGAGGTACATTGATAAATTGGCACGTAGAGAAGGAGCAAAAAG
GCCTCGCAGAAGGGCTCCAGCTGGCTCTAAAGCTGCTGATTCTGGGAAGTCTCTTTCTGA
GCAGCAAGCTGGTAGTCTGAAGGCTGCTAAAAATGCTCTCATCTCAGAAGCAACCGACTT
CATAAGCAGTTTTAAGACGCTGCAAGCCAATTCGCTTGCGCATGCTGTGGAGAATAGTGA
AGACGAGATTGAATGTGATGCCAGTAATTGTAGCCATGATGATAAAGAATAA