Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d009717_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:8:77524892:77526895:1 gene:Zm00001d009717 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase-like superfamily protein
Sequence

ATGCCGCCGACGCTGGGCCTGCTCCTCGCGGCGGCGGCGGCGGTCCTGCTGCTGCTGCTG
CCGCCGCCACCATCGGCGGGGGCGCAGGAGACGTGCTGGTCGGGGCCGGCGCCGCGGCGC
GGGGCGTGGATGTCCGTGGCCAGCTTCGGGGCGCGCGGGGACGGGCAGACGCTCAACACG
GGCGCGTTCGCGCGCGCCGTGGCGCGCATCGCGCGTCGCCGGGGCGCGCGGGGCGGCACG
CTGCTGTACGTGCCGCCCGGGGTGTGGCTCACGGGCCCCTTCAACCTCACCTCCCACATG
ACGCTCTTCCTCGCCCGCGGCGCCATCGTCCGCGCCACCCAGGACACGTCGAGCTGGCCG
CTCATCGACCCGCTGCCGTCGTACGGGAGAGGGCGCGAGCTGCCTGGCGGGAGATACATG
AGCTTGATCCACGGCCACGGTCTGCAGGACGTCTTCATCACAGGTGAGAACGGCACCATC
GACGGCCAAGGCGGCGTGTGGTGGGACATGTGGAAGAAGCGCACGCTGCCCTTCACGAGG
CCGCACCTGCTGGAGCTCATGTACTCCACCGACGTCGTCGTCTCCAACCTCGTCTTCCAG
GACTCGCCGTTCTGGAACATCCACCCGGTTTACTGCAGCAACGTAGTGATAGCAAACCTG
ACTGTGTTGGCGCCGCACGACTCCCCCAACACCGACGGGATCGATCTAGATTCAAGCAGC
AACGTGTGCGTCGAGGACTGCTACATCTCCGCCGGCGACGACCTGATCTCCATCAAGAGC
GGGTGGGACGAGTACGGCGTGGCCTTCGGCCGCCCAAGCTCCGGCATCACGGTCCGGAGG
ATAACCGGGTCGGGCCCGTTCGCCGGCTTCGCGGTCGGGAGCGAGACCTCGGGCGGCGTG
GAGGACGTCGTGGCCGAGCACCTGAGCTTCTCCGGCGTGGGCGTCGGGGTTCACGTGAAG
ACAAACTCGGGCAGGGGCGGCTTCATCCGGAACGTCACCGTCTCCCAGGTGACCCTGGAC
GGCGCCCGCTACGGCCTGAGGATCGCCGGCGACGTTGGGGGCCACCCCGGCGCGTCCTAC
AACGCGAGCCTGCTCCCCGTCATCGACGGCGTGGCGGTCAGGAACGTCTGGGGCCGGAAC
GTCCGGCAGGCCGGGCTCATACGGGGCATCAGGGACTCGGTCTTCAGTAACATTTGCCTC
TCCAACGTGAAGCTCTATGGCATTGGCAGCGACTCCATCGGGCCGTGGAGATGCCGAGCC
GTCAGTGGCAGCGCACTCGACGTGCAACCGTCGCCATGTGCGGAGCTGGCTAGTACGTCC
GGGACAGGTTTCTGTACCTGA

Peptide Sequence

PEP ID

Zm00001d009717_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:8:77524892:77526895:1 gene:Zm00001d009717 transcript:Zm00001d009717_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase-like superfamily protein
Sequence

MPPTLGLLLAAAAAVLLLLLPPPPSAGAQETCWSGPAPRRGAWMSVASFGARGDGQTLNT
GAFARAVARIARRRGARGGTLLYVPPGVWLTGPFNLTSHMTLFLARGAIVRATQDTSSWP
LIDPLPSYGRGRELPGGRYMSLIHGHGLQDVFITGENGTIDGQGGVWWDMWKKRTLPFTR
PHLLELMYSTDVVVSNLVFQDSPFWNIHPVYCSNVVIANLTVLAPHDSPNTDGIDLDSSS
NVCVEDCYISAGDDLISIKSGWDEYGVAFGRPSSGITVRRITGSGPFAGFAVGSETSGGV
EDVVAEHLSFSGVGVGVHVKTNSGRGGFIRNVTVSQVTLDGARYGLRIAGDVGGHPGASY
NASLLPVIDGVAVRNVWGRNVRQAGLIRGIRDSVFSNICLSNVKLYGIGSDSIGPWRCRA
VSGSALDVQPSPCAELASTSGTGFCT

Transcript Sequence

Transcript ID

Zm00001d009717_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:77524892:77526895:1 gene:Zm00001d009717 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase-like superfamily protein
Sequence

CTGCCGTGCCACTGCCATCCTCGAGCACAAGGGACCGACCAGACCCGATCCACAGCTCAT
CACACACACACACAGTGGCGAGCTCGTCAATTGCAGGCAAGACAGCAAGCGCATTTACAC
AGCACGCTGAAAGCCGGGACGCAGAGCAGCTTTTGCGCCTTGTCCCCTCCTGCTCGTCGC
TTCCCTCACTCTCACAGCCACGCCACGCCACGAGAGAAGAATGCCGCCGACGCTGGGCCT
GCTCCTCGCGGCGGCGGCGGCGGTCCTGCTGCTGCTGCTGCCGCCGCCACCATCGGCGGG
GGCGCAGGAGACGTGCTGGTCGGGGCCGGCGCCGCGGCGCGGGGCGTGGATGTCCGTGGC
CAGCTTCGGGGCGCGCGGGGACGGGCAGACGCTCAACACGGGCGCGTTCGCGCGCGCCGT
GGCGCGCATCGCGCGTCGCCGGGGCGCGCGGGGCGGCACGCTGCTGTACGTGCCGCCCGG
GGTGTGGCTCACGGGCCCCTTCAACCTCACCTCCCACATGACGCTCTTCCTCGCCCGCGG
CGCCATCGTCCGCGCCACCCAGGACACGTCGAGCTGGCCGCTCATCGACCCGCTGCCGTC
GTACGGGAGAGGGCGCGAGCTGCCTGGCGGGAGATACATGAGCTTGATCCACGGCCACGG
TCTGCAGGACGTCTTCATCACAGGTGAGAACGGCACCATCGACGGCCAAGGCGGCGTGTG
GTGGGACATGTGGAAGAAGCGCACGCTGCCCTTCACGAGGCCGCACCTGCTGGAGCTCAT
GTACTCCACCGACGTCGTCGTCTCCAACCTCGTCTTCCAGGACTCGCCGTTCTGGAACAT
CCACCCGGTTTACTGCAGCAACGTAGTGATAGCAAACCTGACTGTGTTGGCGCCGCACGA
CTCCCCCAACACCGACGGGATCGATCTAGATTCAAGCAGCAACGTGTGCGTCGAGGACTG
CTACATCTCCGCCGGCGACGACCTGATCTCCATCAAGAGCGGGTGGGACGAGTACGGCGT
GGCCTTCGGCCGCCCAAGCTCCGGCATCACGGTCCGGAGGATAACCGGGTCGGGCCCGTT
CGCCGGCTTCGCGGTCGGGAGCGAGACCTCGGGCGGCGTGGAGGACGTCGTGGCCGAGCA
CCTGAGCTTCTCCGGCGTGGGCGTCGGGGTTCACGTGAAGACAAACTCGGGCAGGGGCGG
CTTCATCCGGAACGTCACCGTCTCCCAGGTGACCCTGGACGGCGCCCGCTACGGCCTGAG
GATCGCCGGCGACGTTGGGGGCCACCCCGGCGCGTCCTACAACGCGAGCCTGCTCCCCGT
CATCGACGGCGTGGCGGTCAGGAACGTCTGGGGCCGGAACGTCCGGCAGGCCGGGCTCAT
ACGGGGCATCAGGGACTCGGTCTTCAGTAACATTTGCCTCTCCAACGTGAAGCTCTATGG
CATTGGCAGCGACTCCATCGGGCCGTGGAGATGCCGAGCCGTCAGTGGCAGCGCACTCGA
CGTGCAACCGTCGCCATGTGCGGAGCTGGCTAGTACGTCCGGGACAGGTTTCTGTACCTG
AATCAGTTTTTCCGCCTCCTATAGCAGCAATAAAGACGTCAGCATTTCTCCATTTTGTTC
ATCACCTACAGGGCCCTTTGTTTCTTTGGCAAACTCTTCTGCGATTCAGCTGTCACTGTT
GAATTCTGCTGTTGGCAGAGGATAATCTATTTTTACC