Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d009714_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:8:77386882:77391860:1 gene:Zm00001d009714 gene_biotype:protein_coding transcript_biotype:protein_coding description:Jasmonic acid-amido synthetase JAR1
Sequence	ATGCCGATCTGTAGCTGTGAAGAAACTATCCATGAGTTCGAGATGTTAACACGCGATGCT GGGCGTGTACAGAAGGATACACTGAAAAAGATCCTCGAGTTGAATGCTGATGCTGAATAT CTGAACAAGTTCGGCCTCAATGGCAGGACTGATGTAGAGAGCTACAAATCCTGCATCCCG CTGTGTGTGCACAGTGATCTTGAGCCATACATCCATAAGATTGCTGATGGTGATAGCTCC CCACTCCTCACTGGGAAGCCCGTCACCTCCCTTTCCCTCAGTTCTGGTACAACGCAGGGA AGGCCTAAGTTCTTGCCGTTTACTGATGAATTGCTTGAGACCACACTTCAAATATTCCAG ACTTCATATGCATTTAGGAACCGTGAGTATCCAATTGGAAGAGGAAAAGCCTTGCAGTTT ATCTATGGTAGCAAGCAAGTGGTAACAAAAGGCGGCATCCTTGCCACAACTGCAACAACA AACTTGTACCGGAGGGCACGATACAAGGAGGGGATGAAGGATATCCAGTCTCAATGCTGC AGCCCTGATGAAGTTGTTTTTGGCTCTGACTTCCACCAGTCCTTGTATTGTCACTTGCTC TGTGGTCTAATATACTCTGATGAGGTCCATCAGGTGTTCTCGACATTCGCTCACAGCTTA GTCCATGCATTTCAAACATTTGAGGAGGTTTGGGAAGATCTCTGTGCTGACATAAGAGAT GGTGTCCTCTCAGAGAAAGTTACAGTGCCATCGGTTCGTGAAGCCGTGACAAAAATCCTC AAGCCCAATCCTGAGCTCGCTGACTCGATCTATAAGAAGTGTACGGGCCTGAGCAACTGG TACGGTGTAATCCCAGCACTCTGGCCAAACGCAAAGTATGTGTACGGTATCATGACAGGG TCCATGGAACCGTATTTAAAGAAACTGAGGCACTATGCTGGGCACTTGCCTCTGATAAGC GCAGATTACGGCGCATCTGAAGGATGGGTTGGTGCTAATATAAACCCCACACTTCCACCT GAACAGGTGACATACGCTGTTCTCCCTCAGACCGGTTATTTTGAGTTCATTCCTTTGGAG GTGGAGAATAGTGCCTCCTCCATTCACTACTTAGAATCAGAACCAGTTGGCCTGACTGAA GTTGAGGTTGGCAAAACCTACGAAGTCGTGATAACTACCTTCGGAGGTCTATACCGCTAC CGGCTAGGAGATATCGTGAAGGTAACGGGCTTCCACAACGCAACACCGGAGCTCCGGTTC ATCTGCCGCAGAAGCCTAGTCCTGAGCATCAACATCGACAAGAACACCGAGCAAGACCTC CAGCTGGCCGTCGAGGAGGCAGCGAAGCTCCTGGACGCGGAGAAGCTGGAGATCGTCGAT TTCACCAGCTTCGTGGAGAAGTCAAGCGACCCCGGTCGCTACGTCATCTTCTGGGAGCTG AGCTCCGACGCGAGCGAGGACGTCCTGCGAGGCTGCGCGAACTGCCTGGACCTAGCCTTC GTCGATGCTGGGTATGTGGGCTCGAGGAAGATCAGAGCCATCGGCCCGCTGGAGCTGCGG ATTCTGAAGAGGGGAACCTTCAAGGAGATCCTGGATCACTTCCTGAGCCTCGGTGGCGCC GTGAGCCAGTTCAAGACGCCTCGGTTCGTCAACCCGTTGAACGTCAAGGTTCTGCAGATA CTCAGTAGGAACACCACCAGAAGCTACTTCAGTACCGCCTATGGGCTCTGA

Peptide Sequence

PEP ID	Zm00001d009714_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:8:77386882:77391860:1 gene:Zm00001d009714 transcript:Zm00001d009714_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Jasmonic acid-amido synthetase JAR1
Sequence	MPICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIP LCVHSDLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQ TSYAFRNREYPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEGMKDIQSQCC SPDEVVFGSDFHQSLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLCADIRD GVLSEKVTVPSVREAVTKILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMTG SMEPYLKKLRHYAGHLPLISADYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLE VENSASSIHYLESEPVGLTEVEVGKTYEVVITTFGGLYRYRLGDIVKVTGFHNATPELRF ICRRSLVLSINIDKNTEQDLQLAVEEAAKLLDAEKLEIVDFTSFVEKSSDPGRYVIFWEL SSDASEDVLRGCANCLDLAFVDAGYVGSRKIRAIGPLELRILKRGTFKEILDHFLSLGGA VSQFKTPRFVNPLNVKVLQILSRNTTRSYFSTAYGL

Transcript Sequence

Transcript ID	Zm00001d009714_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:77386882:77391860:1 gene:Zm00001d009714 gene_biotype:protein_coding transcript_biotype:protein_coding description:Jasmonic acid-amido synthetase JAR1
Sequence	ATCCCGCCCCCGGGCGCGGCACCGCCCGCCGTGCTGCTGTTCCGTTCCGTTCCGTTCCGT TCATCTCCTCCTTATAATCCTCCTCCTCCGCCCGTCGCCTGCCGCACCGCACCCGCCCCG GCCTCCTCCGCAGTCCCATGAGCCAGGCCGCGCCCGTGGCGAACCCTGCTCGCGCCGCGC CTGCCCATTCCCCCTCCGCCCCCGTCGGCCACCGGGCCGCCTCGCCCGCCCGGCGCCCGC GCGGAGCCACAGGCGTCGGCGCCACAGCCGCCCGCTCCCCTCTGCCGCCGGTGCCCGGAG TGCAGATCCGTCTGACCGCGCCGCCGCCGCTCTCGGATATCGCTTTATCCTTCGTATAAT TGTATTGTCAAACTGGCACCCACCGGAATCATATAGCCTGGATAACCAGCAAGCTGCTCT CCGTCTCCTCTCATCAGTGATAAATCCAAGATTCTGCCAGTAAAGATGCCGATCTGTAGC TGTGAAGAAACTATCCATGAGTTCGAGATGTTAACACGCGATGCTGGGCGTGTACAGAAG GATACACTGAAAAAGATCCTCGAGTTGAATGCTGATGCTGAATATCTGAACAAGTTCGGC CTCAATGGCAGGACTGATGTAGAGAGCTACAAATCCTGCATCCCGCTGTGTGTGCACAGT GATCTTGAGCCATACATCCATAAGATTGCTGATGGTGATAGCTCCCCACTCCTCACTGGG AAGCCCGTCACCTCCCTTTCCCTCAGTTCTGGTACAACGCAGGGAAGGCCTAAGTTCTTG CCGTTTACTGATGAATTGCTTGAGACCACACTTCAAATATTCCAGACTTCATATGCATTT AGGAACCGTGAGTATCCAATTGGAAGAGGAAAAGCCTTGCAGTTTATCTATGGTAGCAAG CAAGTGGTAACAAAAGGCGGCATCCTTGCCACAACTGCAACAACAAACTTGTACCGGAGG GCACGATACAAGGAGGGGATGAAGGATATCCAGTCTCAATGCTGCAGCCCTGATGAAGTT GTTTTTGGCTCTGACTTCCACCAGTCCTTGTATTGTCACTTGCTCTGTGGTCTAATATAC TCTGATGAGGTCCATCAGGTGTTCTCGACATTCGCTCACAGCTTAGTCCATGCATTTCAA ACATTTGAGGAGGTTTGGGAAGATCTCTGTGCTGACATAAGAGATGGTGTCCTCTCAGAG AAAGTTACAGTGCCATCGGTTCGTGAAGCCGTGACAAAAATCCTCAAGCCCAATCCTGAG CTCGCTGACTCGATCTATAAGAAGTGTACGGGCCTGAGCAACTGGTACGGTGTAATCCCA GCACTCTGGCCAAACGCAAAGTATGTGTACGGTATCATGACAGGGTCCATGGAACCGTAT TTAAAGAAACTGAGGCACTATGCTGGGCACTTGCCTCTGATAAGCGCAGATTACGGCGCA TCTGAAGGATGGGTTGGTGCTAATATAAACCCCACACTTCCACCTGAACAGGTGACATAC GCTGTTCTCCCTCAGACCGGTTATTTTGAGTTCATTCCTTTGGAGGTGGAGAATAGTGCC TCCTCCATTCACTACTTAGAATCAGAACCAGTTGGCCTGACTGAAGTTGAGGTTGGCAAA ACCTACGAAGTCGTGATAACTACCTTCGGAGGTCTATACCGCTACCGGCTAGGAGATATC GTGAAGGTAACGGGCTTCCACAACGCAACACCGGAGCTCCGGTTCATCTGCCGCAGAAGC CTAGTCCTGAGCATCAACATCGACAAGAACACCGAGCAAGACCTCCAGCTGGCCGTCGAG GAGGCAGCGAAGCTCCTGGACGCGGAGAAGCTGGAGATCGTCGATTTCACCAGCTTCGTG GAGAAGTCAAGCGACCCCGGTCGCTACGTCATCTTCTGGGAGCTGAGCTCCGACGCGAGC GAGGACGTCCTGCGAGGCTGCGCGAACTGCCTGGACCTAGCCTTCGTCGATGCTGGGTAT GTGGGCTCGAGGAAGATCAGAGCCATCGGCCCGCTGGAGCTGCGGATTCTGAAGAGGGGA ACCTTCAAGGAGATCCTGGATCACTTCCTGAGCCTCGGTGGCGCCGTGAGCCAGTTCAAG ACGCCTCGGTTCGTCAACCCGTTGAACGTCAAGGTTCTGCAGATACTCAGTAGGAACACC ACCAGAAGCTACTTCAGTACCGCCTATGGGCTCTGATAAATAAGAAACGCTGCTAGTAGT TCCATCCATGTAATTATATTTATATAAAAAAATATTGCTTCACTGTTCTGTTCTAGTCTC CAGGTAAAAGAAAACAATCTACTCATCCTAGTCCTGCTGGCGCCCTGCTAGAATGTCTGT AAATCCATATGCAAGCAAATGCATTCAGTCTCTGCCTGTGTTCTGAT