Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d009481_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:8:66856052:66860035:1 gene:Zm00001d009481 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTCCGACTTTGTCGGGAGCAGATATACCAAGCAAGAAGATTTCCATGTTTTGTTGAGC
AAGAAAGATCCTGGAGAACCACCTGAACATAAGCACGTCCTGTGGATGGCACACTGGACC
AAAGCAAGCAGCAACAATGGCAGCAGCAATCCTTTGGAGGGTACCACCAAGGGCACTACT
ACGAAAGATAGCGAGACCTTGCCTTATGAATTCACGGAATCTACGGTTGCTAAAAGGCTC
ATGGTAGGAGTAAGCCATGGAAGCGCCTCCATGCAGCATGACCGACAATTCAATTCTAGT
GTGTGGGGTATGGCACGCCATATTTCCAACGAATTGGGACCGAAGAATAGTGAACATGTT
GATGGGTCTTTTGAAAAATTTGTGAAGAAGGATGCTGTGAACTTGAGAGCAAGGGCAGTT
GTGTCAGAAACATACTCTGTTCACAAGCTTTCAGAGTTACCGTTGGATTTTCAGCACCTT
GGGAACTCCGACGATCCAAGTCCAGATTGGAGCCACTTTCCAATGTTCGAAATTAATCGA
AAGATTGACAGTATTCTCAACCGCAAACGAAGGTCTGCACCTCTGAATCTAAATGCGTCT
GCATCCCATGTATTGGCCCTATCGTCACAAGAATACATGATGCACTCACATCAAATAGCT
GACGAGAACTTGGATATGTGCAGACCTGCAGAAGGCTTTGCATCTCACTTAGAAGATCCT
GCTGGCCTCAATTCAGATCCTTCAGGGCCAAAGTTAAAAGGACAGTTATTGGATACCGTG
TCATGTTCTTGCAGCAAGGACGACACCAATTCAGCAGATTGTCTAATAGACGAGCAGCAT
ACAAGCCACTATTTTGCAAACTCAAAGCATGAACTGCCCTCTGTATCTAACGAAAAGAAG
TTCAAGTTTGCAGGAAACAACCACAATCGAATTCTTGCAAGTGCGTCCCATAAACATGAA
AGTGTTGCAGAGGCAATGTTCTGTGCACCAGTACTTGGTAGTGAGCTTCAGAATGAACCT
ATAACTATTTCCAACATCGGCAAGAAGGATGGTGAAAACTTCCATGAGATGTATAATTGT
AATAGCAAGGCTGTTCCTTGTTCTTTGTTAGCTCATGAGCACCATCGTCATCTGAAAACA
CAGAGAACGGAATCTGCAGGAAATTTGAAAGTCTGCACGTTACCTGATCAACAAACTGCA
AATGAATTGGCAGACAAGAGTAATGGTGACCTGCTGACATATGGACCAAAGCCAAAGAAG
GGCTCTTGCAACCGAAGAAGCCTCTATTTATTCGAAAAGTTAACGATTCCTTCCAAATCA
CAAAGTGCATATCCTAAAAATTCTGCGTCTTCAGGAAAATCTAGCGGCTTTGGAGTTTGT
ATGTACGGCACCAATATTGGAAGCCAGTTATTCGGAGCACAGAATCAATCTTCATCTAAG
ACTGAAACATTGCACAGCGATGCTCTTATTGGGTCCAAATCCTCAGCAGGACAACGGTTG
CCCAGCCCCAGCCCCAGCCCCAGCCCCAGACGAAGCGAAAAGCGAGCAGCTAGCAGCTCC
GTCGTCCAACACCAAGCAGGGAGGAGAATCAGCATACAGTAA

Peptide Sequence

PEP ID

Zm00001d009481_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:8:66856052:66860035:1 gene:Zm00001d009481 transcript:Zm00001d009481_T002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MSDFVGSRYTKQEDFHVLLSKKDPGEPPEHKHVLWMAHWTKASSNNGSSNPLEGTTKGTT
TKDSETLPYEFTESTVAKRLMVGVSHGSASMQHDRQFNSSVWGMARHISNELGPKNSEHV
DGSFEKFVKKDAVNLRARAVVSETYSVHKLSELPLDFQHLGNSDDPSPDWSHFPMFEINR
KIDSILNRKRRSAPLNLNASASHVLALSSQEYMMHSHQIADENLDMCRPAEGFASHLEDP
AGLNSDPSGPKLKGQLLDTVSCSCSKDDTNSADCLIDEQHTSHYFANSKHELPSVSNEKK
FKFAGNNHNRILASASHKHESVAEAMFCAPVLGSELQNEPITISNIGKKDGENFHEMYNC
NSKAVPCSLLAHEHHRHLKTQRTESAGNLKVCTLPDQQTANELADKSNGDLLTYGPKPKK
GSCNRRSLYLFEKLTIPSKSQSAYPKNSASSGKSSGFGVCMYGTNIGSQLFGAQNQSSSK
TETLHSDALIGSKSSAGQRLPSPSPSPSPRRSEKRAASSSVVQHQAGRRISIQ

Transcript Sequence

Transcript ID

Zm00001d009481_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:66856052:66860035:1 gene:Zm00001d009481 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GCGGTTGGGCCAATGGGACGGGCGTAAGTGCGTAAGCGAGGACGCGAGGTGAGGTGTGGA
GATTGAGGGGTGGGAGCTGTTGTGGCGCGTGTCTCCCTGTCGCCCGCAGCTTCTTTTTAT
TCCTCCCGTCCGGTTCCGTTCCGGGGAATTGATTCTGGGGAGCCGGCGCGGCCGCGGCTG
CTTTGATCCCTTGCCGCCTGCCTGGCCTGGGCTCTCGTACCGCAACCGCAATTTGGCGGC
GTGCGTGTTCCTTGCCTAGATTGGCGTGATCCAGCTCTGCTCCAACCGTAGAAGTGCGCG
CACTTGCTGCTAGCTAAGAAGCATCTGCAGTGATCGTTCCAGGCTCGTGAGGAAACTCAT
TTGCTCGAATCATGTCCGACTTTGTCGGGAGCAGATATACCAAGCAAGAAGATTTCCATG
TTTTGTTGAGCAAGAAAGATCCTGGAGAACCACCTGAACATAAGCACGTCCTGTGGATGG
CACACTGGACCAAAGCAAGCAGCAACAATGGCAGCAGCAATCCTTTGGAGGGTACCACCA
AGGGCACTACTACGAAAGATAGCGAGACCTTGCCTTATGAATTCACGGAATCTACGGTTG
CTAAAAGGCTCATGGTAGGAGTAAGCCATGGAAGCGCCTCCATGCAGCATGACCGACAAT
TCAATTCTAGTGTGTGGGGTATGGCACGCCATATTTCCAACGAATTGGGACCGAAGAATA
GTGAACATGTTGATGGGTCTTTTGAAAAATTTGTGAAGAAGGATGCTGTGAACTTGAGAG
CAAGGGCAGTTGTGTCAGAAACATACTCTGTTCACAAGCTTTCAGAGTTACCGTTGGATT
TTCAGCACCTTGGGAACTCCGACGATCCAAGTCCAGATTGGAGCCACTTTCCAATGTTCG
AAATTAATCGAAAGATTGACAGTATTCTCAACCGCAAACGAAGGTCTGCACCTCTGAATC
TAAATGCGTCTGCATCCCATGTATTGGCCCTATCGTCACAAGAATACATGATGCACTCAC
ATCAAATAGCTGACGAGAACTTGGATATGTGCAGACCTGCAGAAGGCTTTGCATCTCACT
TAGAAGATCCTGCTGGCCTCAATTCAGATCCTTCAGGGCCAAAGTTAAAAGGACAGTTAT
TGGATACCGTGTCATGTTCTTGCAGCAAGGACGACACCAATTCAGCAGATTGTCTAATAG
ACGAGCAGCATACAAGCCACTATTTTGCAAACTCAAAGCATGAACTGCCCTCTGTATCTA
ACGAAAAGAAGTTCAAGTTTGCAGGAAACAACCACAATCGAATTCTTGCAAGTGCGTCCC
ATAAACATGAAAGTGTTGCAGAGGCAATGTTCTGTGCACCAGTACTTGGTAGTGAGCTTC
AGAATGAACCTATAACTATTTCCAACATCGGCAAGAAGGATGGTGAAAACTTCCATGAGA
TGTATAATTGTAATAGCAAGGCTGTTCCTTGTTCTTTGTTAGCTCATGAGCACCATCGTC
ATCTGAAAACACAGAGAACGGAATCTGCAGGAAATTTGAAAGTCTGCACGTTACCTGATC
AACAAACTGCAAATGAATTGGCAGACAAGAGTAATGGTGACCTGCTGACATATGGACCAA
AGCCAAAGAAGGGCTCTTGCAACCGAAGAAGCCTCTATTTATTCGAAAAGTTAACGATTC
CTTCCAAATCACAAAGTGCATATCCTAAAAATTCTGCGTCTTCAGGAAAATCTAGCGGCT
TTGGAGTTTGTATGTACGGCACCAATATTGGAAGCCAGTTATTCGGAGCACAGAATCAAT
CTTCATCTAAGACTGAAACATTGCACAGCGATGCTCTTATTGGGTCCAAATCCTCAGCAG
GACAACGGTTGCCCAGCCCCAGCCCCAGCCCCAGCCCCAGACGAAGCGAAAAGCGAGCAG
CTAGCAGCTCCGTCGTCCAACACCAAGCAGGGAGGAGAATCAGCATACAGTAAAGAAGAT
GGATCTCATAATCTCAACGAAGGCCACGATGTTTCGTCCAAAGCAGCTATCGGTAGCAAG
CAACCATGCATGCCTGGAGCAGGAATCACGAACCTGGATCTCATACTCTCCCAGATGAGC
AGGATGAGAAACCAGATTCCCAGTGGCGGTGTAACTCAGCCACCAATAGGCGCCGAGCCA
AGTGATAGATGGCTCAAGCGCCTGCAGCTCGGCGTACCAGACCCTGACGTCCTTGGTTCC
AAGACCAAGAGGCCAAAAGTCGGAGACAGTCCTCCGCCACCCAGGCAAATAAACCGGTCC
TTTGACGTGGCACTCCCTTGCAACCCAGGAAAACAGGAGGAGCAGAGCTTGAATGGAGGG
GGGAAAGTGCAGGGAAGAGCCCCCCCGATTCCAGAGAAGAGCGTCAATCGCTGGATAGGG
AGATGGTGCCAGGGCGGCACTCCTGTTTTCCGTGAAGGCCCAGGCCAGGGAAGGCAGGCA
ACGAAACCTGCTGGCCGGTTGTCCGAGGAGCTTGAAGGACAGTTCTTTCCAAGCACTGCG
GCGATGGCGATGATGGGGCGCGCGATGCACAAGCTCCGGCCGTGCGAGCAGCAGCAGAAG
GGGCCATTCGTGGTGTGGAAGATAGATTGACCTTTTTGGGTGTGATATACTTGTTTCTTT
AAAAAAAATAAAATGTAAGGCAACTATGCATTTTGCCTGGCTGTGGCTCATGGTTTATTG
CTTTCTGGTAGTGGAAGTAGCTAGGTGTAGTGCCTACTGATTGTGTAATGCTTTGCTGTA
CCAAAAGTGTAATACTATACTGTTTACTGTG