Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d009341_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:8:57438059:57439657:1 gene:Zm00001d009341 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase-like superfamily protein
Sequence

ATGCCCAACACACTGGTGCTGTTTCACGTGATCAACGCCACTGTCGCCGGAATCAAACTA
CTCAACTCCAAGTTCTTCCACATCAACATCGACAACTCAGAGAGCATCACCGTGAAGGAC
GTGAACATCACCGCGCCCGCCGACGTTGAGAACACGGACGGCGTCCACGTCGGAGGCTCC
TCCAAGATCAGCATCCTCAACTCGACCATCGGCACCGGCGACGACTGCGTCTCGATTGGG
CCCGGGTGCAACGGCGTCTTGGTGGACAGCATCACCTGCGGCCCCGGGCAGGGCATCAGC
GTCGGCTGCCTAGGCCGCTACAAGGACGAGAAGGACGTGAGCGACATCACGGTGCGGAAC
TGCGTGCTCAAGAACACCACCAACGGCGTGCGCATCAAGTCGTACGTGGACGCCGAGTCC
GTGCTGACGGCCTCCCATCTCACCTTCGAGAACATCAGGATGGAGGAGGTGGCCAACCCC
ATCGTCATCGACCAGTACTTCTGCCCGCAGAAGGTATGCCCTGGCAAGCGGAGCAACTCC
TCGCATGTCTCCGTCAAGGACGTCACGTTCCGCAACATCACCGGCACGTCGTCCACGCCC
GAGGCCATCAGCCTGCTCTGCTCGGAGACGCAGCCATGCAGCGGCGTCTCCCTCATCGAT
GTCAACGTGGAGTACGCCGGCAAGAACAACAAAACCATGGCCGTCTGCAGCAACGCCAAG
GGCACCGCCAAGGGAAGCATCGAGGCACTGGCTTGCCTGGTCTGA

Peptide Sequence

PEP ID

Zm00001d009341_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:8:57438059:57439657:1 gene:Zm00001d009341 transcript:Zm00001d009341_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase-like superfamily protein
Sequence

MPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNITAPADVENTDGVHVGGS
SKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRN
CVLKNTTNGVRIKSYVDAESVLTASHLTFENIRMEEVANPIVIDQYFCPQKVCPGKRSNS
SHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNVEYAGKNNKTMAVCSNAK
GTAKGSIEALACLV

Transcript Sequence

Transcript ID

Zm00001d009341_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:57438059:57439657:1 gene:Zm00001d009341 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase-like superfamily protein
Sequence

CCCCAGCGGCGAGGAGAGCCGGCGGCCACAGGAAGGAGAAATGGCTTCCGCACACAACGC
TCTCCGGGTGTTTTTCATCCTAGCCGTGGTATGTGCCGTATGCACAGCGAAAAGGACAGG
AGCCAACAAGGAAGAATCGGCGGCAGCCCCCGGTGGCGCTGCTGGAGGCAGCGGCGGGAC
GTTCGACATCTCCAAGCTCGGCGCGACCAGCGACGGCAAGACGGACTGCACAAAGATCGG
TGACGGTGCAGGCAGTCCAGGACGCGTGGACGTCAGCGTGCGAAGCGACCGGAAGCGCCA
CGGTGGTGATCCCCAAGGGCGACTACCTGGTCGGCCCTCTCAACTTCACTGGGCCATGCA
AGGGGAGCAACATCGCCATCCAGCTGGATGGCAACCTGCTGGGATCAAACGACCTGGACA
AGTACACGGCGAGCTGGATCGAATTGTCTCACGTTAACAACATCGGGATCACCGGCTCGG
GCACGCTGGACGGCCAGGGGACCGCCGTTTATAGCAAGAGCAAGACCGACAACGTGAAGG
CGATGCCCAACACACTGGTGCTGTTTCACGTGATCAACGCCACTGTCGCCGGAATCAAAC
TACTCAACTCCAAGTTCTTCCACATCAACATCGACAACTCAGAGAGCATCACCGTGAAGG
ACGTGAACATCACCGCGCCCGCCGACGTTGAGAACACGGACGGCGTCCACGTCGGAGGCT
CCTCCAAGATCAGCATCCTCAACTCGACCATCGGCACCGGCGACGACTGCGTCTCGATTG
GGCCCGGGTGCAACGGCGTCTTGGTGGACAGCATCACCTGCGGCCCCGGGCAGGGCATCA
GCGTCGGCTGCCTAGGCCGCTACAAGGACGAGAAGGACGTGAGCGACATCACGGTGCGGA
ACTGCGTGCTCAAGAACACCACCAACGGCGTGCGCATCAAGTCGTACGTGGACGCCGAGT
CCGTGCTGACGGCCTCCCATCTCACCTTCGAGAACATCAGGATGGAGGAGGTGGCCAACC
CCATCGTCATCGACCAGTACTTCTGCCCGCAGAAGGTATGCCCTGGCAAGCGGAGCAACT
CCTCGCATGTCTCCGTCAAGGACGTCACGTTCCGCAACATCACCGGCACGTCGTCCACGC
CCGAGGCCATCAGCCTGCTCTGCTCGGAGACGCAGCCATGCAGCGGCGTCTCCCTCATCG
ATGTCAACGTGGAGTACGCCGGCAAGAACAACAAAACCATGGCCGTCTGCAGCAACGCCA
AGGGCACCGCCAAGGGAAGCATCGAGGCACTGGCTTGCCTGGTCTGATGATGACCTTCCT
TTTGCATGCATGCATGGTATCTCATCCTTGATGATGATCTAGCTCACTAGTTCTTTTTAA
TTTCCGCTTCATTCGCTTTTCCAAATTCGATTGTGTTTCAGCCAAGTTGTTTAGCGG