Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d009330_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:8:56626303:56630811:-1 gene:Zm00001d009330 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LNK2
Sequence

ATGGAACCTGTACAGACTCCTCAATATGCACTGTTCCAGGATAGCAAGAAGATAGGAGAA
GTTCAGCATGCTAATCAGTTTATGTTTCCTGGATATGGGTATCCTCCTGCATATCCATTT
CCTACCATTCCGTTAGTGTCAAACATTCAAGCTGAAGGCTATCAGACAAAACCAGCTGGC
ACAAGCTACCGAACTTCGGAAGATTACCTAAAACAGTCAAGTTCCACAGAAATGTCACAA
GATATACCATCAAGACCACTAACAATGACACCACAAGAAAAGATAGAAAAGCTTAGGCGC
CGGCAACAAATGCAAGCACTGATAGCTATTCAGCAACAACAGCAACAGTTTGGTCAACAG
GGTCCTGGCAGTGACACAATGGTGTCTCAAGCATACACCCCTGGTAACAAAAATCCGGAT
TCCTTAGGGAGTTCAATTGTCATAGATGAAAACACAAATAAGGTTATTTCGCCTGAGATG
ATTCCAACTGACCATGACCGGGTTCACAAGAGTTCTGCAATTTCAGATGATCCCTTTATA
GAGGAAAAAATATATTATCAGCTACAAGATGCTCTTGGCAAGTTGGATACCAAAACTCGA
CTATGCATTCGAGATAGTTTGCTTCGTTTGGTCCATAGTGCAACAGAGAGAAAGATTGAT
GGTGATAGGAGCACTAACAAGACTAATAAAGATGAAGATGAAGCTTCGGAAGACGCATCT
ACTAGGAAAACAAGGTCTCCAAACAAGGAAGCAGAAACAACCACTAATCCAATTGATCGT
ATAGTGGCCCATTTGCTGTTCCACAGACATTGCTCCAAGGTTGCAAAAGCAACAAAAGAA
ATAATATCGTCAATCCCCTTGACTCTAGAACCTGAGCCGAAGGTACCCTTGGGAACTCCT
AGGGTTCCATCAAAAGATCAACGAGATGAGCAAGAAATTGTGTTGCAACCATCACAATAA

Peptide Sequence

PEP ID

Zm00001d009330_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:8:56626303:56630811:-1 gene:Zm00001d009330 transcript:Zm00001d009330_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LNK2
Sequence

MEPVQTPQYALFQDSKKIGEVQHANQFMFPGYGYPPAYPFPTIPLVSNIQAEGYQTKPAG
TSYRTSEDYLKQSSSTEMSQDIPSRPLTMTPQEKIEKLRRRQQMQALIAIQQQQQQFGQQ
GPGSDTMVSQAYTPGNKNPDSLGSSIVIDENTNKVISPEMIPTDHDRVHKSSAISDDPFI
EEKIYYQLQDALGKLDTKTRLCIRDSLLRLVHSATERKIDGDRSTNKTNKDEDEASEDAS
TRKTRSPNKEAETTTNPIDRIVAHLLFHRHCSKVAKATKEIISSIPLTLEPEPKVPLGTP
RVPSKDQRDEQEIVLQPSQ

Transcript Sequence

Transcript ID

Zm00001d009330_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:56626303:56630811:-1 gene:Zm00001d009330 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LNK2
Sequence

TATATGAATTTGGCAAGTTTCTAGCTATTATTTATACATTAAAAATCTATTTATATTTTA
TTTTATCTGATTTTCGAGTTTTCTGGACTGGGCCTCAAATACAGAGAAGTGCAGAGGCTA
GCTGGTAAATTATCCTAGACTCAGTGAACAATACCCCCAGGACGGCGGGTTGCGAAAAAT
TTGAGGTGCGCCGAACCCTGGTCGGACATGGTATCCTGATCGAGCGACTAATCGTCGCTA
TTCGTTGACTAGTCGGACGACCAGACGATCAGGTGTCCTAATCGGGTCGCCTGCCCTGAT
CGACCACCCAAAACCGACTAGTCCGACTAAGTCGGACGACTTGAAAACACAACCACAAAT
CTAACACAACATACACATTTCGTAGCACTTATTTGTTGAACTTGTAGTCTTTTTGTAGGC
CAACATTCTGCACCATACAACATAGCAGGTCTAATCGTCGTCCTATAGAAAGTCAGATGG
TTGACGCCACTTCATCCTTCTTGCTTTGATTCTATGGCTAACATGTTCATCAATATCCCC
GTCTTTGTAATATTGATCCTAAATACCTAAAGGTGTCCTTCCTAGGCACTGCTTGACCTT
CCAAACTAACATCTCCTTCCTCGTGTAATGTCAAAATCACACCTCATATATTCTATTTTA
GTTCTATTGAGTCTAAAACCATTGGATTCTAGAGTCTCCCGCCATAACTCTAGTTTTCTA
TTTACTCCTTCTCGACTTTTATCAACTAGAACTACATTGTTCGCAAAAAAAACATACACC
AAAGGATATCCCCTTATATGTCAAAAGGTAAGGGCTCAAAGCTTATCCTTGATGTTAGCC
CTATTCTAATCGAGAAGTCATTTGTGTCCCCATCATTTGTTCGAAGACTAGTCACAACAC
TTGTTGTACATGTCTTTACTAATACTTTGTTGGAACTTTATGTTTTTTTCCAAAGCCCAC
CACATAACATTCTTTTGCTCGATGTTGGTTCAAATAGATCTTCGTTATTCCTCTCACGAT
GCTCGATAACTATCTCTCATAGTTTCACAGTATGGCTCATCAACTTAATTCCCTGGTAAT
TAGTACAACTTTGAATATTTTCCTTATTCTTGTAGATCGGTACCAATATACTTCTCCACT
CGTTAGGCACCAAGTTGGTTAGGTGGTCTAAGTAGCACTCAGGTCCTATGTTAGAATCCC
AGTGGGAGCGAATTTCAAGTTAACGTTAAAAAAGATCACTCACTGGTTTCTCTGGTTGTG
TGCACACGAGATCGATTGACCTATGGGGAGGGGGGTGGATCCTCATGTAGGGGCTGGGAG
GGCTCAAAGAATGAGTAAAGATCTGACCTATATGGGGCGGACCCTCATGCTGCACACGGG
TTCTTGAGACTCTTATCAATCAAAATTTGGTCTGTTCTTGAGACTCTTATCAACCAAATC
CCCACAACAAGCTTGACTAAGATAATCTTATCTCCTTGTCTCCCCATATCCACCACACTG
TTCTTGAGACTCTTATCAATCAAAATTTCTACTCCATTTCTATTTGCAGCTATCCTTTTG
TACCAATGTTTGAAATCGGTATTGTCTACCACCTCGCCTCCTGACCCTTCTATTTGGTCT
GTTGGACGTATAAGCTATTTACATGTCTTCTAGTCGTTTCAACTAACTCCTTTAACTTAA
CTATAAGCGACCCTACGTTCCAGCTATCTAAATGCATCATAGTTGGTTTGGCGCTTCCTT
ACCCTTCGCGCCTGTCGGTGATGCGGAGACACTTGCATATTTTTCATTACACCTGGATAC
CGATGTAGCACGCTACTAAGGAAGTATCGACCTGATCCTTGCTTCCTTGACACCGTGTCC
ATATCGCGACATGGCGTGTCACCAAGGCGGTGCCGACCTGGCCCTTGCCCATTTAGCACC
ATACCTAGGTTCTGATATGACGTGTTGCTAAGAGGGTTACACCCCAACAGATTTTTTTGG
GTTAACTTTGGCTCGCCAAGCCTAACACAACCCTTCTCATTTACACATGTTCTTATGTTT
AGAAAATATTTCTTGGCTACTCTGGTTACCCACTTTTGGTAGGTATCAAATGCTAATGCT
AAATCTGGAGCGGAGCTGAGATTAAAATTCATCTGACTTGTGAATATTCTGGGAAACTAA
ATCAGTTCTTGCATGAAGTAGAATTCATGTGATGTACTCTGCCAAACTATTTAGATTACT
TCGGAGCTTTTCTGTGTCAAATTGTAGCACCAATTGATATGCTGTTGTTTCTCATCTGGA
TTGATGTCATAAAACAAAATAACATTGTTTGAGACTGCATTAGCTCCAGAAAATTTGTAG
CTGGTAGAGCAGGTTATTTGGTGCCCTAGAAAATTGTGGAGCTGGAGTTGTGAATCTTTA
GAAGACATTTAGATAAGTTGTTTTGTTTATTGTTTATATTAAAAATATTTTTCAAAACCA
TTTAAATTTATGTTATAAACTACAGCTCAACGTTGGAGCTGGAACCTGATTGCGTATCTG
TCAACAAGCTGTTTCTGAAAAAAACTTTAGATCTTTTGAGAAAATCTTGCCATACTAATG
TGATATCTCATATTTGTCAGTTCTGCTCCAGTTGGTTCTCTCAAGCCCATTATAAAAGTT
TTTGGTGCGCTCAAGTACATTAAGCACAAAGTGAAGCTTTTATTAGCAAAATGAGCTCTT
CCTAAACTTAGTTTTTGAGCCTGTGATTAATCTGCTTACTTTATTGGCACTTTTTAGCAC
CTGATTTGAGGGGAGGGGGTGATTTTTCTTTAGTTTAATTGTAAATTAACCACTCCATGT
AGGTCGAAGCACATAAGAGGCCAGTGTGGTCACGTAGAAAACCAGAGGAAAGAGGTAAAA
GTAAAATATCCAGCAGTACAAGTGGCTTCTCCCACAGCAAAGTAGAGAGTTCATCGACGA
ATTTGCAAACTCCTATGGAACCTGTACAGACTCCTCAATATGCACTGTTCCAGGATAGCA
AGAAGATAGGAGAAGTTCAGCATGCTAATCAGTTTATGTTTCCTGGATATGGGTATCCTC
CTGCATATCCATTTCCTACCATTCCGTTAGTGTCAAACATTCAAGCTGAAGGCTATCAGA
CAAAACCAGCTGGCACAAGCTACCGAACTTCGGAAGATTACCTAAAACAGTCAAGTTCCA
CAGAAATGTCACAAGATATACCATCAAGACCACTAACAATGACACCACAAGAAAAGATAG
AAAAGCTTAGGCGCCGGCAACAAATGCAAGCACTGATAGCTATTCAGCAACAACAGCAAC
AGTTTGGTCAACAGGGTCCTGGCAGTGACACAATGGTGTCTCAAGCATACACCCCTGGTA
ACAAAAATCCGGATTCCTTAGGGAGTTCAATTGTCATAGATGAAAACACAAATAAGGTTA
TTTCGCCTGAGATGATTCCAACTGACCATGACCGGGTTCACAAGAGTTCTGCAATTTCAG
ATGATCCCTTTATAGAGGAAAAAATATATTATCAGCTACAAGATGCTCTTGGCAAGTTGG
ATACCAAAACTCGACTATGCATTCGAGATAGTTTGCTTCGTTTGGTCCATAGTGCAACAG
AGAGAAAGATTGATGGTGATAGGAGCACTAACAAGACTAATAAAGATGAAGATGAAGCTT
CGGAAGACGCATCTACTAGGAAAACAAGGTCTCCAAACAAGGAAGCAGAAACAACCACTA
ATCCAATTGATCGTATAGTGGCCCATTTGCTGTTCCACAGACATTGCTCCAAGGTTGCAA
AAGCAACAAAAGAAATAATATCGTCAATCCCCTTGACTCTAGAACCTGAGCCGAAGGTAC
CCTTGGGAACTCCTAGGGTTCCATCAAAAGATCAACGAGATGAGCAAGAAATTGTGTTGC
AACCATCACAATAATGTGAGATGTGCTAGAAGATAAGGTTTTACTCAATTTGAGTAAACT
TATTTGCATTTAGTTAGCCTATGAATCTAATGTCGTCCTTCTAACGAGTATACACATGCT
GATTAATCAACTGTTCAGGATAAAAAGTTATGCAAATCCAGTGATGATGGCAGT