Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d009167_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:8:40630094:40633047:1 gene:Zm00001d009167 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase

Sequence

ATGCCGCCGGCGACAAGCACGCGCCCGCCGTTTCGTCGCCCGGTACCATTGCTGACGGTG
GTCGTTTCCGTGGCGCTCCTGTCACTCGTGTGCTTTCTTGTAGCTGCTGATGCAAGCAGA
TCGCTGCACTACCACTACCACCTCCGGAAGCACCGGAGGCACCACGGGCACCACCGCGCG
GAGAACTACAGCCACATCTCCCTGCCCCCTGCCGCGCCGCCTCCTGGCGCTGATGGCGAT
TCTCCGGCCGGACCGGTGGGTCTGCCTCCGGACGTTGGCGGCGCGCTGCCGCCGAGCTCC
TGCAGTGACAAGCCGTGCCCGCTTTCGCCTAGTCCTTCCAGGGCACCGGCAGGCGCGCCA
TGTTCGACGCCCGGTTCGGCCAAGCCTCCGGCTTTAACCTTGGCCACTCCGCCGTCGCCC
GCGCCAGCCACTCCACCATCTCATTCTCCTCCGAATCCACCGTCGTCGCACCAACCGTTT
CAGCGGCCCACACTTCCTCTTGCCAAGGCGCCGCCGTCGTCCAAGCCACCGTCGCCGGAC
ATCGCACCATTTCATCCTCACGCCAAGCCGCCGCGCGCGCTTCCAGACGCCAAGTCGCCG
TCACAGCCACCAAAAAGGGCGCCAGCACCATCGCCGTTGTCTCCTTCGAAGCCGCGCAAA
CCGCCATCGTGCACTTTGGCTACGCCACCACAGGCCCAGACATCGAGACTCGCCCCTGCC
AGTGCCAAGCCACCAATGCGATCACCAGCCCATCCACCGAAGCTCTCCCCGGCAAGCCCA
CTGGCGCACCCACCGGTCGAGCCGCCAAAGTCAGCTCTTGCCAAGCCGCCTGGTTTCTCT
TTCTCCCATACTACCAAGCCACAGCCACCAGTGGCTTCGATGGTGAAGCCACCACGACTC
GCCCCGGCCAAGCCTCCAGCGCCGTCGCCGTTGCCTGCAGCCCAGCCACCGCGGTGCTCC
ACGGCAAATCCGCCAGTAGCTCCTACGGCGTCAGCGAAGCCACCGGCGTACCCTCCTGCT
GCTGCGTCAAAGCCAATTCCGCCGCCGCCGCTCCCACCGGCAGCCAACAACAGCTCATCA
GCCTGGGGCAACGTGTTCGACGTGAGGGCGTTCGGGGCGTCGGGCAGCGGCTCAGGCAAC
GACACGCGCGCGTTGCGCGCTGCGTGGAAGGCGGCGTGCTCGTCCAACTCCACCACGCCC
ACGCTGCTGGTGCCGTCGGACGGCGTGTTCACCATCAGCTCCACCATCTTCGCCGGGCCG
TGCAAGTCCGCTGTGACCTTCCAAATCGACGGCGTGCTGATGCCGCCAGACGGGCCGGCG
AGCTGGCCGGCGTCCGACAGCCGGAAACAGTGGATAGTCTTCTACAAGGCCAACGGCATG
ACGCTGGCAGGGGAAGGCACCATCGAAGGCAACGGGGAGGAGTGGTGGGACCTCCCGTGC
AAGCCTCACAGGGTACGTACGTATCTGGTACGATTCTTCTTGAGCAACGACGTGACGGTG
CGCGGCCTGCGGATCGAGAACAGCCCGCAGTTCCACCTCAAGTTCGACGACTGCGAGAGG
GTGCGCGTGGATGGCCTCTTCGTCCGCTCGCCGGCGTTCAGCCCCAACACGGACGGCGTC
CACGTCGAGAACACCACGTCCGTCCAGATCCTCAACTCCAGGATCTACAACGGCGACGAC
TGTGTCTCCATCGGCGCCGGCTGCTCCGACGTCCGCATCGAGAACATAACATGCGGCCAC
GGCCATGGCATAAGCATCGGCAGCCTGGGCGTGCACGGCACGCGCGCCTGCGTGTCCAAC
ATCACGGTCCGGAACGCGCGGATCCTCGACTCCGACAACGGCGTCCGGATCAAGACCTGG
CAGGGAGGCACAGGCGCCGTGACGGCGGTCGAGTTCGCCGGCGTGCAGATGCAGAACGTG
AAGAACTGCATCCTCATCGACCAGTACTACTGCCTCGGGAGCGGGTGCGCCAACCTGTCC
TCCGCGGTGCGCGTCGCCGGGGTCACGTATCGGGACATCCGCGGCACGTACAATCCGCAG
GCCAGCGCGCCCATCCGCCTCGCGTGCAGCGACGCCGTCGCCTGCACGGACATCACCATG
TCCGGCGTCGAGCTGTTGCCGGCCAGCGGAGGAGGCGCACGAGCGCTGCTTGCGGACCCC
TACTGCTGGAACGCGTACGGAGTCATGGAGACGCTCACGCTGCCTCCTGTGTACTGCTTG
CAGGAAGGCCGACCGGAGTCGCTGCAAGATCAGCTCACCAGTTGCTGA

Peptide Sequence

PEP ID

Zm00001d009167_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:8:40630094:40633047:1 gene:Zm00001d009167 transcript:Zm00001d009167_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase

Sequence

MPPATSTRPPFRRPVPLLTVVVSVALLSLVCFLVAADASRSLHYHYHLRKHRRHHGHHRA
ENYSHISLPPAAPPPGADGDSPAGPVGLPPDVGGALPPSSCSDKPCPLSPSPSRAPAGAP
CSTPGSAKPPALTLATPPSPAPATPPSHSPPNPPSSHQPFQRPTLPLAKAPPSSKPPSPD
IAPFHPHAKPPRALPDAKSPSQPPKRAPAPSPLSPSKPRKPPSCTLATPPQAQTSRLAPA
SAKPPMRSPAHPPKLSPASPLAHPPVEPPKSALAKPPGFSFSHTTKPQPPVASMVKPPRL
APAKPPAPSPLPAAQPPRCSTANPPVAPTASAKPPAYPPAAASKPIPPPPLPPAANNSSS
AWGNVFDVRAFGASGSGSGNDTRALRAAWKAACSSNSTTPTLLVPSDGVFTISSTIFAGP
CKSAVTFQIDGVLMPPDGPASWPASDSRKQWIVFYKANGMTLAGEGTIEGNGEEWWDLPC
KPHRVRTYLVRFFLSNDVTVRGLRIENSPQFHLKFDDCERVRVDGLFVRSPAFSPNTDGV
HVENTTSVQILNSRIYNGDDCVSIGAGCSDVRIENITCGHGHGISIGSLGVHGTRACVSN
ITVRNARILDSDNGVRIKTWQGGTGAVTAVEFAGVQMQNVKNCILIDQYYCLGSGCANLS
SAVRVAGVTYRDIRGTYNPQASAPIRLACSDAVACTDITMSGVELLPASGGGARALLADP
YCWNAYGVMETLTLPPVYCLQEGRPESLQDQLTSC

Transcript Sequence

Transcript ID

Zm00001d009167_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:40630094:40633047:1 gene:Zm00001d009167 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase

Sequence

ATACGCAATGCCGCCGGCGACAAGCACGCGCCCGCCGTTTCGTCGCCCGGTACCATTGCT
GACGGTGGTCGTTTCCGTGGCGCTCCTGTCACTCGTGTGCTTTCTTGTAGCTGCTGATGC
AAGCAGATCGCTGCACTACCACTACCACCTCCGGAAGCACCGGAGGCACCACGGGCACCA
CCGCGCGGAGAACTACAGCCACATCTCCCTGCCCCCTGCCGCGCCGCCTCCTGGCGCTGA
TGGCGATTCTCCGGCCGGACCGGTGGGTCTGCCTCCGGACGTTGGCGGCGCGCTGCCGCC
GAGCTCCTGCAGTGACAAGCCGTGCCCGCTTTCGCCTAGTCCTTCCAGGGCACCGGCAGG
CGCGCCATGTTCGACGCCCGGTTCGGCCAAGCCTCCGGCTTTAACCTTGGCCACTCCGCC
GTCGCCCGCGCCAGCCACTCCACCATCTCATTCTCCTCCGAATCCACCGTCGTCGCACCA
ACCGTTTCAGCGGCCCACACTTCCTCTTGCCAAGGCGCCGCCGTCGTCCAAGCCACCGTC
GCCGGACATCGCACCATTTCATCCTCACGCCAAGCCGCCGCGCGCGCTTCCAGACGCCAA
GTCGCCGTCACAGCCACCAAAAAGGGCGCCAGCACCATCGCCGTTGTCTCCTTCGAAGCC
GCGCAAACCGCCATCGTGCACTTTGGCTACGCCACCACAGGCCCAGACATCGAGACTCGC
CCCTGCCAGTGCCAAGCCACCAATGCGATCACCAGCCCATCCACCGAAGCTCTCCCCGGC
AAGCCCACTGGCGCACCCACCGGTCGAGCCGCCAAAGTCAGCTCTTGCCAAGCCGCCTGG
TTTCTCTTTCTCCCATACTACCAAGCCACAGCCACCAGTGGCTTCGATGGTGAAGCCACC
ACGACTCGCCCCGGCCAAGCCTCCAGCGCCGTCGCCGTTGCCTGCAGCCCAGCCACCGCG
GTGCTCCACGGCAAATCCGCCAGTAGCTCCTACGGCGTCAGCGAAGCCACCGGCGTACCC
TCCTGCTGCTGCGTCAAAGCCAATTCCGCCGCCGCCGCTCCCACCGGCAGCCAACAACAG
CTCATCAGCCTGGGGCAACGTGTTCGACGTGAGGGCGTTCGGGGCGTCGGGCAGCGGCTC
AGGCAACGACACGCGCGCGTTGCGCGCTGCGTGGAAGGCGGCGTGCTCGTCCAACTCCAC
CACGCCCACGCTGCTGGTGCCGTCGGACGGCGTGTTCACCATCAGCTCCACCATCTTCGC
CGGGCCGTGCAAGTCCGCTGTGACCTTCCAAATCGACGGCGTGCTGATGCCGCCAGACGG
GCCGGCGAGCTGGCCGGCGTCCGACAGCCGGAAACAGTGGATAGTCTTCTACAAGGCCAA
CGGCATGACGCTGGCAGGGGAAGGCACCATCGAAGGCAACGGGGAGGAGTGGTGGGACCT
CCCGTGCAAGCCTCACAGGGTACGTACGTATCTGGTACGATTCTTCTTGAGCAACGACGT
GACGGTGCGCGGCCTGCGGATCGAGAACAGCCCGCAGTTCCACCTCAAGTTCGACGACTG
CGAGAGGGTGCGCGTGGATGGCCTCTTCGTCCGCTCGCCGGCGTTCAGCCCCAACACGGA
CGGCGTCCACGTCGAGAACACCACGTCCGTCCAGATCCTCAACTCCAGGATCTACAACGG
CGACGACTGTGTCTCCATCGGCGCCGGCTGCTCCGACGTCCGCATCGAGAACATAACATG
CGGCCACGGCCATGGCATAAGCATCGGCAGCCTGGGCGTGCACGGCACGCGCGCCTGCGT
GTCCAACATCACGGTCCGGAACGCGCGGATCCTCGACTCCGACAACGGCGTCCGGATCAA
GACCTGGCAGGGAGGCACAGGCGCCGTGACGGCGGTCGAGTTCGCCGGCGTGCAGATGCA
GAACGTGAAGAACTGCATCCTCATCGACCAGTACTACTGCCTCGGGAGCGGGTGCGCCAA
CCTGTCCTCCGCGGTGCGCGTCGCCGGGGTCACGTATCGGGACATCCGCGGCACGTACAA
TCCGCAGGCCAGCGCGCCCATCCGCCTCGCGTGCAGCGACGCCGTCGCCTGCACGGACAT
CACCATGTCCGGCGTCGAGCTGTTGCCGGCCAGCGGAGGAGGCGCACGAGCGCTGCTTGC
GGACCCCTACTGCTGGAACGCGTACGGAGTCATGGAGACGCTCACGCTGCCTCCTGTGTA
CTGCTTGCAGGAAGGCCGACCGGAGTCGCTGCAAGATCAGCTCACCAGTTGCTGAGATGA
CACTGTTTTCTTTTATCTAACCAAAAACAAATATATTGCCGATGACAGTACAACGGTAAA
AATTGTTACAAAAGTTTCACATGTGATCAATCCCAACCGGTGTGACAGTTATTGCCTATG
GGTCGCACCCTTTGGGGACCCTGTGTACTGTACTATATATATAACTATCTCTGCAATAAA
GAAACTGTCTCAGTCATTTGTC