Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d009005_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:8:29712796:29720386:1 gene:Zm00001d009005 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS domain-containing protein
Sequence	ATGGATCAGAGCCGGCGGGCGGTGGAGTCGTACTGGCGCTCGCGGATGGTGGACGGCGTC ACGGCGGACGACGACAAGGTCGCGCCCGTCTACAAGCTCGAGGAGATCTGCGAGCTCCTG CGTGCCTCCGACGCCAGCATCGTCAAGGAGGTCGCCGACTTCGTCCTCAAGCGCCTCGAC AACAAGAGCTCCCTTGTTAAGCAAAAGGCTTTACGGTTGATCAAATACGCAATTGGAAAA TCTGGTACTGATTTCAAGAGGGAGATGCAAAGGCACTCAGCGGCTATACGCCAACTAGTT CATTACAAAGGCCACCCTGACCCCTTAAGAGGGGATGCCCTTAATAAGGCTGTTCGGGAA ACTGCGAATGAGGCTATTGCTGCAATTTTCTCCACAGAGGACCCTAAACCTGCTGTCGCA ACCGAAAGTCTTGGCAAGCGCATACAAGGCTTTGGAAATACTAATTACGAGCCATCTAGA GATGAAAAGAAGTCTTTCCTTAGTGAACTTAGCGAAGTAGTGGGTATTGGAAGTGCATCC ATCAAGCAGGGTTTGAGCAACTTCGCTGCAGCGCATGCAATAATGATAAATGACAACGGC AGCACATACAAGAGCCCTAATCTACGTAGGTCTTTAACCACAGAATCTGAAAAATATGGC CGGTATGATCCAAGTGAAATTCAAAGTGAGAGCCGTGCCTCATCTGATGCTTCAAAGAAC GTAGCTTCTGGTTCTTGGGGTCCGACTTCCAGTTCTGCACCATCCGATGATACTAGCTCA AGTCAACCAGGGGTTAAAACTCGTGAAGAAAGACTTCTGGAGACAATTGTTACTGCAAGT GGTGTGCGATTGCAACCAACGCGAGATGCTCTGCGGGTTTTTTTAACAGAAGCTTCCAAA TTGGATGCAGTTGCCTTGAGCCGCGCACTTGAAAACAAACTGAATTCCCCATTATGGCAG GTTCGCATGAAGGCTATTTGTGTGTTGGAAGCCATTGTAAGGAAACAGGATACTGATCCT TATTCTATCATTGCTTCATATTTCATTGAGAACACAGCTTCTGTTGTTAAATGCTCTGAG CTGCCACAGGTTTCTCTCAGAGAGAAGGCCTCAAAGGTCTTGAATATGCTGATTGGGGAA GAGCCTACTGGAACCACAGCAACAAAATCTGCAATGGCCACACCTGTTCAGATGCCTGAT TTGATCGATACAGGTGATCAAGATGGTCTGGCAACAAGTTCTGGACAGGAAAGCAATGGA CAAAAAAATACTGGGAAAGCATATGTTTCTTCAGTTGATGATTTGCTTGGTGGTGAACCT ATTGCTGATACAAGTGTCACTGCTGATAGCAATGGAAGCGATCCATTTGCAGATGTATCG TTCCATGAGGTAGAGGCTAAGGAGACTAATGATCTCTTCTCAGGATTGATAGTAGAAGAA AAATCATCAGCTACCATGCACGGCAGTTCTTCATCAAACAAAAATGAATTACCAGATATC TTTGGCAGCCCCCCTGATTCTTTCATCCAAGGTAGTGTTACTGACCAAGGAACTGTCAAT GATTTGATGTCTGGTTTGAACCTTAATGGAACAGGTCAGGCTCATCCTCCAGTTAAAGCA GAACCCAATAGCACCTTCAGTGGTTCACAGTTCTTTGATACAAACAATGAGATCGGCCAT GTGGCAAGTGCTGCAGCATTGAATGGCATTGTTGGTCAAAACTCGTTTTACCAACAGCAG CAGACTCCCTTGCAGTACAGCTTCCCTCAACATATGATGCTCAATCAATCATTTCCTGGG CAACAATTAAATTATGGTGCTATGGGGATTCTTCTTGCTCAGCAGCAGCAGTTACTGCAA AATTTTGGAAATTTCAATGCTGAACTTGGGAATTCTTCTTTCAATTCGATGAACAGTGGA AATGCATCAGTGCTTCCAGATATTTTCAATTCAAGTAATCAACCTCAAAATCATGTTGCA GCGATGAGCAGTTCGAAGAAAGATGACACTAGAGCTTTTGATTTTGTTTCGGTATGTATT TCTATAATTCTATCTAGTAATTAG

Peptide Sequence

PEP ID	Zm00001d009005_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:8:29712796:29720386:1 gene:Zm00001d009005 transcript:Zm00001d009005_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS domain-containing protein
Sequence	MDQSRRAVESYWRSRMVDGVTADDDKVAPVYKLEEICELLRASDASIVKEVADFVLKRLD NKSSLVKQKALRLIKYAIGKSGTDFKREMQRHSAAIRQLVHYKGHPDPLRGDALNKAVRE TANEAIAAIFSTEDPKPAVATESLGKRIQGFGNTNYEPSRDEKKSFLSELSEVVGIGSAS IKQGLSNFAAAHAIMINDNGSTYKSPNLRRSLTTESEKYGRYDPSEIQSESRASSDASKN VASGSWGPTSSSAPSDDTSSSQPGVKTREERLLETIVTASGVRLQPTRDALRVFLTEASK LDAVALSRALENKLNSPLWQVRMKAICVLEAIVRKQDTDPYSIIASYFIENTASVVKCSE LPQVSLREKASKVLNMLIGEEPTGTTATKSAMATPVQMPDLIDTGDQDGLATSSGQESNG QKNTGKAYVSSVDDLLGGEPIADTSVTADSNGSDPFADVSFHEVEAKETNDLFSGLIVEE KSSATMHGSSSSNKNELPDIFGSPPDSFIQGSVTDQGTVNDLMSGLNLNGTGQAHPPVKA EPNSTFSGSQFFDTNNEIGHVASAAALNGIVGQNSFYQQQQTPLQYSFPQHMMLNQSFPG QQLNYGAMGILLAQQQQLLQNFGNFNAELGNSSFNSMNSGNASVLPDIFNSSNQPQNHVA AMSSSKKDDTRAFDFVSVCISIILSSN

Transcript Sequence

Transcript ID	Zm00001d009005_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:29712796:29720386:1 gene:Zm00001d009005 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS domain-containing protein
Sequence	GAAACCGTTGTTGTGGTTGTTGGTTGCACAGGCAGGATTGCAGGAAGGCACAAGAAGGGC AAAAGGCAGGCAGACCCGCGCGCCATTCTCTAGAACCTTCCACGGTCCACCTCCCTCGTT CCTCCGGCGGCACGTGCCCGTGCCGCTCGGCTCACCCGCAACCCTCCCTCCACGCCTCTC CTCGTCGACGAGCGGACCCGGTCCACGCCCCCACCCCCTTCCCATCCCAATCCCAGATCC CGGCCAGCCCTCCGATTCGGCCGCGACCGTGGTGGGTTCGGTCCCCCTCCGATCGGGGCA GCAGCCATGGATCAGAGCCGGCGGGCGGTGGAGTCGTACTGGCGCTCGCGGATGGTGGAC GGCGTCACGGCGGACGACGACAAGGTCGCGCCCGTCTACAAGCTCGAGGAGATCTGCGAG CTCCTGCGTGCCTCCGACGCCAGCATCGTCAAGGAGGTCGCCGACTTCGTCCTCAAGCGC CTCGACAACAAGAGCTCCCTTGTTAAGCAAAAGGCTTTACGGTTGATCAAATACGCAATT GGAAAATCTGGTACTGATTTCAAGAGGGAGATGCAAAGGCACTCAGCGGCTATACGCCAA CTAGTTCATTACAAAGGCCACCCTGACCCCTTAAGAGGGGATGCCCTTAATAAGGCTGTT CGGGAAACTGCGAATGAGGCTATTGCTGCAATTTTCTCCACAGAGGACCCTAAACCTGCT GTCGCAACCGAAAGTCTTGGCAAGCGCATACAAGGCTTTGGAAATACTAATTACGAGCCA TCTAGAGATGAAAAGAAGTCTTTCCTTAGTGAACTTAGCGAAGTAGTGGGTATTGGAAGT GCATCCATCAAGCAGGGTTTGAGCAACTTCGCTGCAGCGCATGCAATAATGATAAATGAC AACGGCAGCACATACAAGAGCCCTAATCTACGTAGGTCTTTAACCACAGAATCTGAAAAA TATGGCCGGTATGATCCAAGTGAAATTCAAAGTGAGAGCCGTGCCTCATCTGATGCTTCA AAGAACGTAGCTTCTGGTTCTTGGGGTCCGACTTCCAGTTCTGCACCATCCGATGATACT AGCTCAAGTCAACCAGGGGTTAAAACTCGTGAAGAAAGACTTCTGGAGACAATTGTTACT GCAAGTGGTGTGCGATTGCAACCAACGCGAGATGCTCTGCGGGTTTTTTTAACAGAAGCT TCCAAATTGGATGCAGTTGCCTTGAGCCGCGCACTTGAAAACAAACTGAATTCCCCATTA TGGCAGGTTCGCATGAAGGCTATTTGTGTGTTGGAAGCCATTGTAAGGAAACAGGATACT GATCCTTATTCTATCATTGCTTCATATTTCATTGAGAACACAGCTTCTGTTGTTAAATGC TCTGAGCTGCCACAGGTTTCTCTCAGAGAGAAGGCCTCAAAGGTCTTGAATATGCTGATT GGGGAAGAGCCTACTGGAACCACAGCAACAAAATCTGCAATGGCCACACCTGTTCAGATG CCTGATTTGATCGATACAGGTGATCAAGATGGTCTGGCAACAAGTTCTGGACAGGAAAGC AATGGACAAAAAAATACTGGGAAAGCATATGTTTCTTCAGTTGATGATTTGCTTGGTGGT GAACCTATTGCTGATACAAGTGTCACTGCTGATAGCAATGGAAGCGATCCATTTGCAGAT GTATCGTTCCATGAGGTAGAGGCTAAGGAGACTAATGATCTCTTCTCAGGATTGATAGTA GAAGAAAAATCATCAGCTACCATGCACGGCAGTTCTTCATCAAACAAAAATGAATTACCA GATATCTTTGGCAGCCCCCCTGATTCTTTCATCCAAGGTAGTGTTACTGACCAAGGAACT GTCAATGATTTGATGTCTGGTTTGAACCTTAATGGAACAGGTCAGGCTCATCCTCCAGTT AAAGCAGAACCCAATAGCACCTTCAGTGGTTCACAGTTCTTTGATACAAACAATGAGATC GGCCATGTGGCAAGTGCTGCAGCATTGAATGGCATTGTTGGTCAAAACTCGTTTTACCAA CAGCAGCAGACTCCCTTGCAGTACAGCTTCCCTCAACATATGATGCTCAATCAATCATTT CCTGGGCAACAATTAAATTATGGTGCTATGGGGATTCTTCTTGCTCAGCAGCAGCAGTTA CTGCAAAATTTTGGAAATTTCAATGCTGAACTTGGGAATTCTTCTTTCAATTCGATGAAC AGTGGAAATGCATCAGTGCTTCCAGATATTTTCAATTCAAGTAATCAACCTCAAAATCAT GTTGCAGCGATGAGCAGTTCGAAGAAAGATGACACTAGAGCTTTTGATTTTGTTTCGGTA TGTATTTCTATAATTCTATCTAGTAATTAGTTTCTTGCCTTGCATTATTTACAACTAGAA ATAAATTTAGGATATTCTAACATTGTTGATGCGTAGTATCTAACTAATGATTCAATGATT TGAAAGCTAGTAATAGGTTTATATTTTGGACGCTCAAGGTTCTTTGAAACAAGTAGGCTT TTGAATCGGATGCATTTCTTATTGAAATTTCAAACTTGCTTCACAAGCTCGTAGGCTTAT GGAAGTAAATAGCTCATGGTTGTTGTGTGGAGTGTGGAGGCAGAGAGAGCCATAGGCTTG CGTGGACCTTGGATGTTGACAGAGGGAAAAATATGATCGTTTAGGTGTAAATGTGTCTGA TACTTGATTTCTGTAGTGTTATGAAATGTGGGTAATGATTTAATGTCTCCAATCCTCAAT CAGGGCGCTAAAAAATGCATTTTTGTGGATACTGTACTACCATCAGTCATCCATTTGCAT ACAACCTATGGATTTCTGTGAATCTTTGCTTCCCTGGACAGTCAATAAATTCGCTGAACT ACAAAACAGAACATACAAACCCAACCCACACCTCTGTTCATATCTTACATGCGGGGGTAA CCAAATTCACAAATCACATGCTGGTTATTAAGGAAACACAATCCTTCAATGCTAAGGTTG CTTGCTTGTAGAACTGTTACAATTCTTGCTGTTTCATAGCTTGCGACAGTCTTTCATTTT ATTCTGCAAATGTAGGCCAAATCTTATTACGAAACTAGTCTTTGTTCGAGCGACCTTGTG TTGTGAACTGCGATGCACTCGCAAGATAGTCCCGGTACTCAGCCCTCCCGTAGGAGGCCC TAGGAGTAAACCAGATCTATTCTTCTTCCTCCCTCTACTAACACCCTGCCCCTCCTTATA TAGATAGGTAACCCTAACTTAATAGCTAAGCAACATAACAAACCCTATCTGTCCGGCACT GTTCACGCGCTACAGTAACCGCACGTGAACAGTGGCCGCAGCTAACCTAGCCATAATGAC ATAGCTAATGGGCTAAGGCCCATAACATTCCATCTCTCCTTAAAAACAGCTCGTCCGTGA GCTGTAGTCAAGAAGAATTGACCCATACTAAACTAGCACTTAATGACTCAATACTAAGTC TTTTACATCTCGACTTAATATTTTATTCACCTAGAAAAAAAATGAACCACGTCAGTGGTC GGATCTATCGAAGGAGGACGTGTCGGCGGCCAGATCGACTGATGACGGACGTGGCTGCGG TGGCGCAGAGGGCTCCCTGCGCCTAGCGAAGGTCGGTGGCACCCTCCGGTGTTGTAGCTC AAGTGACCACGCCGCGGCGGTGGCCAAGGTGGCTGACGTCGACCACAGCTGCGACGACGC AGCAGATGGCTGTCCGTGGTGCAGAAGATTGATGGCCACGGCGCGGAGGATTGGTAGTTG TGGCGTGGAGGGTTATCCCGCAGCAGCGCCTCTACAGGTTGGGCCACCATGGCGGCCGAT TGTTGCAGATTGGGCGAGCAGATCCGTGCGCAGCCATAGTCGGGCCACGCCTGGACCTCC ATGAGCACGGAGGCGGGCTGCAGCAGTGGCACAGCCACCTCAACGTAGAACGCCGCCTCC ACCTCCCTGGGTGTGTTGGGTTGCAGCCCATTGACCCCATCGTCCTCGACTCGGCCGCCT CCTCCCGTGCCCAGGCCGCCCTCGCTCGCGCCCAGGCAGCCCGCGGTAGAAGCAGAGGGG CTGACCCACGCCTGCTCTAGCTTGGCCAGACGAGCGTCGTGGGAATCCAAACGGGCATTG ATGGCGGCAAGTTGCTCGAGGATGAGGTCCATCTTGGCGGAGTAGGTCACAAGATCGTCG TGCGCGCCGGCCATGGTGGCGATGCGCGCGTAGTGGCTCCGGTACCAATTTGTTGTGAAC TGCGATGCACTCGCAAGATAGTCCCGGTACTCAGCCCTCCCGTAGGAGGCCCTAGGAGTA AACCAGATCTATTCTTCTTCCTCCCTCTACTAACACCCTGCCCCTCCTTATATAGATAGG TAACCCTAACTTAATAGCTAAGCAACATAACAAACCCTATCTGTCCGGCACTGTTCACGC GCTACAGTAACCGCACGTGAACAGTGGCCGCAGCTAACCTAGCCATAATGACATAGCTAA TGGGCTAAGGCCCATAACACCTTGTCTATATGTTAAATCTGCATGGCTTTCCCTTTTGTT CAGGATCACCTTGCAGCGGCACGTGCTTCAAGAAAGTGAACCAGGAAGCGATGAGCATGT CCATATGCTGGCAAGAGCTCAAGTGCTTGATGGACACAAAAGCTGGGACTCCAAAAGCTG CATCTCGTCACAGCCTCGCAGATTGGCTGCATGATCACACACGGCTGGTTTGGCATGGGA TCGGGCGCATGTTTGAACAGTTGAGAAAGAAGGGTTGTTCCATACGGTTGAAAGACGGGA TGTTGTGTCGTACTATGTACTTAGACAAAGACTGTTTTTTTACTCTGAAAAATAAATTGC ATCTTCCGACTTTCCTTATGTTCTGCCCTTTTCTCTCTTCCTTTTTTTATTAAAAAAATG AGTCAGACACCATATACGTATTTATTACCTCAGGTTTTATTTCTTTTCTGTACAAGTACA TGGAGGATGTTTTTTTTTTTGCGGCAATTGTAAAGCTTTGGGACACGAATAAGAGGGTGC AATATGATATGAGCTGCTACATGATCTTTGCAATG