Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008977_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:8:28097044:28102346:1 gene:Zm00001d008977 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1
Sequence

ATGCTGCCAAACGGAGAAGCTCCCTCCGGATCCATGCCGCCGGTGCCTGCCGCCGACGCG
AACACCTCTAATTCAGATGACACTAGATTTGATGCGTCACAGTATGCCTTTTTTGGCAAC
AATGTGCTGGAGGAGATTGAACTAGGCGGATTCGAAGATGATAACAGCAGTAATGCTGCT
TTCGCTGGACTCGATGATTTAGAGCGCCCACTTTCTTCTCAGGGGATTGCACTAGAGGCT
GAAGATAGTTCATTTTCAGATCTTGATGATCTTGCAAATACATTCTCAAAGCTAAGAAGA
GATGTTAACCTACCAAAGCATATTGGGGTAAATAACCTTGGGACTTCTTTTTCAAGAGAA
AGTTCTGCTGCTGCTGACTGGGCGCCGGAATTTGAATCCCCACTCTGGTCCGATCAGCAT
GTGCTAGTTGCTAACCAAGGACCGAATGGCAATGGCTGGTGGTCTCCACAGCATCATTCT
TCTCTCCTTGCTGATTCCAGATTGCACAGAACATCCTCATCCCCTCAGCAACAGGAACAA
CACAATCATGATGCACCTATTCTTGGACCAAGGCCATCTCCTTTGCACCGGACATCTTCA
TACCCGCAAAAGGAGCCTCAGTACAACCCAGCTGAAGTCATTCCAAATGCACCATACATG
TCAAACTATCTACCTGGTGGGCCACCCAATTCAGTGCCTCGACAACCACATCAGATGAAC
ATGCCATCTTTCAATGAATTTCAGATGCATATGTCTGCGCAAAGTGAGACCCCATTCTCC
CAGTTTCCTCGTGGAGGGACACCTCCAGAGCCATTATTTGGTGGAAACCGGGGTCATATG
ATTTCAACAGGCTTCTCAACTAACAGCAGTGGACAACGAGACCATCTGCTGAATAATGGG
CAGTTTCATGGGGAAACTGCCAGCATCATGCCAAATTTGCTGCCAAACCATCTACAACGT
CCGAATACATTCATGCCCCCTCAATTGTTGACAGTACGCCAACAGCATGGCATGCTCCCA
ATTCAGCAATCTTCAAAGCAGTCATCAAGAACACAGACACACATGTTTGGCCCCCAGCAT
CCACCACAAATGATGAATAGGTTTGATAATTTTGGGATGCCTGAGTTCAGTGATCCAAGA
GCAAGATCATCAATGCACCATGGCAGGCAAGGTCAACATTTTCCTCTCCATGGCTCTGAG
TTTGGTATTATGAAGATGGGTAATGGGAGGTCAAGGTTTAGATCCAAGTATATGTCCACT
GAAGAACTTGAAAACATTTTAAGAATACAGCATGCCGCCACTCATATAAATGATCCATAC
ATCGATGATTATTACCATCAAGCTTGTCTGGCCAGCAGATATGTGGATGCAAGGTCGAAG
CACCGCTTCTGCCCAACCTTGATTCGTGATCCATCATCCTGTACACGGAGTAAGGATGAG
CCACATGCATACCTTAAGGTTGATGCCCTTGGGAGACTGCCATTTTCTTCTGTACGGAGA
CCGCGTCCACTCCTTGACGTTGAGCCAGCTTCTGCAACTGATGATGACACCGTTATTTCA
AAGCCTCTTGATCAGGAACCTCTGCTAGCTGCTAGGATCACGATTGAGGATGGACTCTCC
CTATTACTTGACATAGACGATATTGACCGCTTGCTTCAGTTTAGCCAGCAGCAAGATGGT
GGTTTCGAACTTAAAAATAGAAGGCAATCTCTACTTGGTCAGCTGGCAGAATCGCTGCAG
TTGGTTGATCCACTAGGTGCAAATAAAAACACACATCTGTCCGCAAATGATGATTTGGTA
TTTCTTCGCATTGTTTCTCTACCCAAGGGCCGGAAACTACTTTCACGCTATATCAACCTC
ATGGTACCTGGTAGCGATCTTGCAAGGATAGTTTGCATGGCAGTATTCAGGCACCTGAGG
TTTGTGTTTGGAAATCTGCCCTCTGATGACGGCGCAGCTGAGACAGTAACTAAACTGGCT
AGCGCTGTAGCATCATGCATTCGCGGGATGGACTTAAGTGGCCTCAGTGCTTGTCTCGCA
GCAATTGTGTGCTCGTCTGAGCACCCACCCCTTCGGCCCCTTGGCCATGCTGCTGGCGAT
GGTGCCACTGTCGTCATAAAGGCTGTCCTGGATAGAGCAACAGAGCTCCTCACCGAGCAG
CCTGCCGCGCCAGACTATGGCGCTCCAAACCGAGCCTTGTGGCAAGCGTCGTTCAATGCC
TTCTTTGGGCTGCTCACTAAGTACTGCATGAGTAAGTTTGATAGCATGGTTCACACGATG
CACAAGCTCGGTGCTGCTGCTGCAACAGCGATACGCAAGGAACTTCCGGTTGAGCTTCTG
CGCGCCAGCCTTCCTCACACGGATGAGCAGCAGCGCAGACTACTGCTCGAGTTCGCCCAG
CGGACCGTGCCCGTCTCTGGCCATGGCTCCGACGGGTGA

Peptide Sequence

PEP ID

Zm00001d008977_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:8:28097044:28102346:1 gene:Zm00001d008977 transcript:Zm00001d008977_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1
Sequence

MLPNGEAPSGSMPPVPAADANTSNSDDTRFDASQYAFFGNNVLEEIELGGFEDDNSSNAA
FAGLDDLERPLSSQGIALEAEDSSFSDLDDLANTFSKLRRDVNLPKHIGVNNLGTSFSRE
SSAAADWAPEFESPLWSDQHVLVANQGPNGNGWWSPQHHSSLLADSRLHRTSSSPQQQEQ
HNHDAPILGPRPSPLHRTSSYPQKEPQYNPAEVIPNAPYMSNYLPGGPPNSVPRQPHQMN
MPSFNEFQMHMSAQSETPFSQFPRGGTPPEPLFGGNRGHMISTGFSTNSSGQRDHLLNNG
QFHGETASIMPNLLPNHLQRPNTFMPPQLLTVRQQHGMLPIQQSSKQSSRTQTHMFGPQH
PPQMMNRFDNFGMPEFSDPRARSSMHHGRQGQHFPLHGSEFGIMKMGNGRSRFRSKYMST
EELENILRIQHAATHINDPYIDDYYHQACLASRYVDARSKHRFCPTLIRDPSSCTRSKDE
PHAYLKVDALGRLPFSSVRRPRPLLDVEPASATDDDTVISKPLDQEPLLAARITIEDGLS
LLLDIDDIDRLLQFSQQQDGGFELKNRRQSLLGQLAESLQLVDPLGANKNTHLSANDDLV
FLRIVSLPKGRKLLSRYINLMVPGSDLARIVCMAVFRHLRFVFGNLPSDDGAAETVTKLA
SAVASCIRGMDLSGLSACLAAIVCSSEHPPLRPLGHAAGDGATVVIKAVLDRATELLTEQ
PAAPDYGAPNRALWQASFNAFFGLLTKYCMSKFDSMVHTMHKLGAAAATAIRKELPVELL
RASLPHTDEQQRRLLLEFAQRTVPVSGHGSDG

Transcript Sequence

Transcript ID

Zm00001d008977_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:28097044:28102346:1 gene:Zm00001d008977 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1
Sequence

AAGGGCAAGGCAGTTGGCCGCCGCGCCCCCGCCCCGCGGGTCTCCCCTCCTGCTCCGGTC
CAGGGCGCCCCGGCCCCCCCTCGTCCGAATCCCGTCGGTGGTGAGCCGCCGCCGGGTGTG
GCCCGCGAGCTGCGACGCGCCGACGATGCTGCCAAACGGAGAAGCTCCCTCCGGATCCAT
GCCGCCGGTGCCTGCCGCCGACGCGAACACCTCTAATTCAGATGACACTAGATTTGATGC
GTCACAGTATGCCTTTTTTGGCAACAATGTGCTGGAGGAGATTGAACTAGGCGGATTCGA
AGATGATAACAGCAGTAATGCTGCTTTCGCTGGACTCGATGATTTAGAGCGCCCACTTTC
TTCTCAGGGGATTGCACTAGAGGCTGAAGATAGTTCATTTTCAGATCTTGATGATCTTGC
AAATACATTCTCAAAGCTAAGAAGAGATGTTAACCTACCAAAGCATATTGGGGTAAATAA
CCTTGGGACTTCTTTTTCAAGAGAAAGTTCTGCTGCTGCTGACTGGGCGCCGGAATTTGA
ATCCCCACTCTGGTCCGATCAGCATGTGCTAGTTGCTAACCAAGGACCGAATGGCAATGG
CTGGTGGTCTCCACAGCATCATTCTTCTCTCCTTGCTGATTCCAGATTGCACAGAACATC
CTCATCCCCTCAGCAACAGGAACAACACAATCATGATGCACCTATTCTTGGACCAAGGCC
ATCTCCTTTGCACCGGACATCTTCATACCCGCAAAAGGAGCCTCAGTACAACCCAGCTGA
AGTCATTCCAAATGCACCATACATGTCAAACTATCTACCTGGTGGGCCACCCAATTCAGT
GCCTCGACAACCACATCAGATGAACATGCCATCTTTCAATGAATTTCAGATGCATATGTC
TGCGCAAAGTGAGACCCCATTCTCCCAGTTTCCTCGTGGAGGGACACCTCCAGAGCCATT
ATTTGGTGGAAACCGGGGTCATATGATTTCAACAGGCTTCTCAACTAACAGCAGTGGACA
ACGAGACCATCTGCTGAATAATGGGCAGTTTCATGGGGAAACTGCCAGCATCATGCCAAA
TTTGCTGCCAAACCATCTACAACGTCCGAATACATTCATGCCCCCTCAATTGTTGACAGT
ACGCCAACAGCATGGCATGCTCCCAATTCAGCAATCTTCAAAGCAGTCATCAAGAACACA
GACACACATGTTTGGCCCCCAGCATCCACCACAAATGATGAATAGGTTTGATAATTTTGG
GATGCCTGAGTTCAGTGATCCAAGAGCAAGATCATCAATGCACCATGGCAGGCAAGGTCA
ACATTTTCCTCTCCATGGCTCTGAGTTTGGTATTATGAAGATGGGTAATGGGAGGTCAAG
GTTTAGATCCAAGTATATGTCCACTGAAGAACTTGAAAACATTTTAAGAATACAGCATGC
CGCCACTCATATAAATGATCCATACATCGATGATTATTACCATCAAGCTTGTCTGGCCAG
CAGATATGTGGATGCAAGGTCGAAGCACCGCTTCTGCCCAACCTTGATTCGTGATCCATC
ATCCTGTACACGGAGTAAGGATGAGCCACATGCATACCTTAAGGTTGATGCCCTTGGGAG
ACTGCCATTTTCTTCTGTACGGAGACCGCGTCCACTCCTTGACGTTGAGCCAGCTTCTGC
AACTGATGATGACACCGTTATTTCAAAGCCTCTTGATCAGGAACCTCTGCTAGCTGCTAG
GATCACGATTGAGGATGGACTCTCCCTATTACTTGACATAGACGATATTGACCGCTTGCT
TCAGTTTAGCCAGCAGCAAGATGGTGGTTTCGAACTTAAAAATAGAAGGCAATCTCTACT
TGGTCAGCTGGCAGAATCGCTGCAGTTGGTTGATCCACTAGGTGCAAATAAAAACACACA
TCTGTCCGCAAATGATGATTTGGTATTTCTTCGCATTGTTTCTCTACCCAAGGGCCGGAA
ACTACTTTCACGCTATATCAACCTCATGGTACCTGGTAGCGATCTTGCAAGGATAGTTTG
CATGGCAGTATTCAGGCACCTGAGGTTTGTGTTTGGAAATCTGCCCTCTGATGACGGCGC
AGCTGAGACAGTAACTAAACTGGCTAGCGCTGTAGCATCATGCATTCGCGGGATGGACTT
AAGTGGCCTCAGTGCTTGTCTCGCAGCAATTGTGTGCTCGTCTGAGCACCCACCCCTTCG
GCCCCTTGGCCATGCTGCTGGCGATGGTGCCACTGTCGTCATAAAGGCTGTCCTGGATAG
AGCAACAGAGCTCCTCACCGAGCAGCCTGCCGCGCCAGACTATGGCGCTCCAAACCGAGC
CTTGTGGCAAGCGTCGTTCAATGCCTTCTTTGGGCTGCTCACTAAGTACTGCATGAGTAA
GTTTGATAGCATGGTTCACACGATGCACAAGCTCGGTGCTGCTGCTGCAACAGCGATACG
CAAGGAACTTCCGGTTGAGCTTCTGCGCGCCAGCCTTCCTCACACGGATGAGCAGCAGCG
CAGACTACTGCTCGAGTTCGCCCAGCGGACCGTGCCCGTCTCTGGCCATGGCTCCGACGG
GTGACGGACGGGCGGGTGGCGGCTGGTGGAACCATGGCATCTGAAACAATACCAGCTTAA
GGTGGTCAGCGAATATTGGTGCGCTAGATGCGGTATTTTATTCTATCATACGCAGACCTG
CCCAATGAATCGAGCGTTCCTTGAGCTGCAGTTCAGATGGGCATGCCGGCGTTAAGTGGA
TGTATGTCCCAGGTTTGGATCCGTCTGTTTAGGCTAATAGTATTCTCTCTGCACGGGCTG
TGTTTCGTTGGCTCTGGGTGGGAACGGAACCCCCCTGCACGTTCCTTGAAGGCAATTGCA
AGAAAATACTGCGAGCTGTTGGTGTTTCGGTTTGCAGTGTTTGTTTGTAGTGGCGTCAAG
GCTTCCAAGGTTCTCATCTCATCACTCCGGACGGGTGCCAGGAAGATGTGGTTTAACACA
TGTATAAACTAGCAAATGCTTGGAAGGTTGATATTTGGTTCTGTAGCCAGCCATTCGAAG
ATTGTTGGGTGGGGGGTTTTGTTTCCTGTTATATTCGCAACTGAATACATTATCTTGCGA
AGCTGTTCAGTCTGTAACGAGTTCATTGGGAATTCCACTATATATCCTTGTTATGGATGG
TCAGGAGCTTTGTATTTTTGTGATTCTGGGTATTACCCTTGTGTTCCATAAAGGACGCTT