Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008975_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:8:27990270:27996394:-1 gene:Zm00001d008975 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartate--tRNA ligase 2 cytoplasmic
Sequence

ATGTCGTCGGAGCCTCCACCCGCCCCTTCTGCCGCCGCAGCAGAGGGACTGGCTGCTGAC
CTTTCCGCCGCCACCCTCAGCAAGAAGCAGCAGAAGAAGGACGCCAGGAAGGCGGAGAAG
GCTGAGAAGGCGGCGCAGCGCCAGCAACAGCAGCAGCCGGCCGACGCCGAGGACCCATTT
GCGGCCAACTACGGTGATGTCCCCGTCGAGGAGATCCAGTCAAAAGCCATTTCCGGCCGC
TTGTGGTCCCAGATCGGCGACCTCGACGACTCCTCTGCGGGGCGCTCTGTGCTTATCCGT
GGATCCCTGCAGGCTATCCGCCCGGTCAGCAAGAAGATGGCTTTCGTCGTGCTGCGCCAG
AGCATGAGCACCGTGCAGTGCGTGCTCGTTGCCAGCGCCGACGCCGGCGTCAGCACGCAA
ATGGTGCGCTTCGCCACCGCCTTAAGCAAGGAGTCCATCGTCGACGTTGAGGGCGTCGTG
TCCCTCCCCAAGGAGCCCCTCAAGGCCACCACGCAGCAAGTTGAGATTCAAGTCAGGAAG
ATCTATTGCATCAATAGGGCTATCCCAACCCTTCCAATTAACCTTGAAGATGCAGCTCGG
AGTGAGGCAGATTTTGAGAAGGCTGAACTGGCTGGAGAAAAGCTTGTTCGTGTTGGTCAA
GATACCCGCTTGAACTACAGAGCTATTGATCTACGAACACCCTCGAATCAAGCCATATTC
CGGATCCAGTGTCAAGTTGAAAACAAATTCAGAGAATTTCTGTTGTCAAAGGACTTTGTT
GGGATCCACACGCCAAAATTGATTTCTGGATCCAGTGAAGGTGGTGCAGCTGTATTCAAG
CTTCTGTACAATGGTCAACCTGCTTGCTTGGCACAATCTCCTCAGTTGCACAAGCAGATG
GCTCTATGTGGTGGTTTTGAACGAGTATTTGAGGTTGGCCCTGTGTTTAGAGCAGAAAAT
TCAAACACACACAGGCATCTCTGTGAGTTTGTTGGTCTTGATGCTGAAATGGAGATTAAG
GAGCATTATTTTGAGGTCTGTGACATTATAGATGGCTTATTTGTATCAATATTTAAACAC
TTGACTGAAAACTGCAATAAAGAACTCGAGACGATAAACAGGCAGTATCCATTTGAACCT
CTGCAGTATCTAGACAAAACATTGAAGCTCACTTATGAAGAAGGAGTTCAAATGTTGAAG
GAAGCCGGAACAGAAATTGAGCCTATGGGTGACCTCAATACTGAAGCTGAGAAAAAACTT
GGTCGGCTTGTCAGGGAAAAGTATGACACAGATTTTTTCATTATGTATCGATATCCTTTG
GCTGTGCGTCCCTTCTACACTATGCCTTGTTATGACAACCCAGCTTACAGCAATTCTTTT
GATGTCTTTATTCGAGGCGAGGAGATAATATCTGGAGCGCAAAGGATACACACTCCTGAG
CTGTTGACCAAGCGTGCAACAGAGTGTGGAATCGATGTCAGCACTATCTCGACCTACATT
GAAGTCTTCAGCTATGGCGCGCCTCCGCATGGTGGTTTCGGGGTGGGTTTGGAGAGGGTG
GTGATGCTGTTCTGCGCCCTAAACAACATCAGGAAGACCTCGATGTTCCCTCGCGACCCG
CAGAGGCTTGTGCCGTAA

Peptide Sequence

PEP ID

Zm00001d008975_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:8:27990270:27996394:-1 gene:Zm00001d008975 transcript:Zm00001d008975_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartate--tRNA ligase 2 cytoplasmic
Sequence

MSSEPPPAPSAAAAEGLAADLSAATLSKKQQKKDARKAEKAEKAAQRQQQQQPADAEDPF
AANYGDVPVEEIQSKAISGRLWSQIGDLDDSSAGRSVLIRGSLQAIRPVSKKMAFVVLRQ
SMSTVQCVLVASADAGVSTQMVRFATALSKESIVDVEGVVSLPKEPLKATTQQVEIQVRK
IYCINRAIPTLPINLEDAARSEADFEKAELAGEKLVRVGQDTRLNYRAIDLRTPSNQAIF
RIQCQVENKFREFLLSKDFVGIHTPKLISGSSEGGAAVFKLLYNGQPACLAQSPQLHKQM
ALCGGFERVFEVGPVFRAENSNTHRHLCEFVGLDAEMEIKEHYFEVCDIIDGLFVSIFKH
LTENCNKELETINRQYPFEPLQYLDKTLKLTYEEGVQMLKEAGTEIEPMGDLNTEAEKKL
GRLVREKYDTDFFIMYRYPLAVRPFYTMPCYDNPAYSNSFDVFIRGEEIISGAQRIHTPE
LLTKRATECGIDVSTISTYIEVFSYGAPPHGGFGVGLERVVMLFCALNNIRKTSMFPRDP
QRLVP

Transcript Sequence

Transcript ID

Zm00001d008975_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:27990270:27996394:-1 gene:Zm00001d008975 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartate--tRNA ligase 2 cytoplasmic
Sequence

CGTCGCCGGCTCGTTGCCGGCTCGTCGGCACGATGTCGTCGGAGCCTCCACCCGCCCCTT
CTGCCGCCGCAGCAGAGGGACTGGCTGCTGACCTTTCCGCCGCCACCCTCAGCAAGAAGC
AGCAGAAGAAGGACGCCAGGAAGGCGGAGAAGGCTGAGAAGGCGGCGCAGCGCCAGCAAC
AGCAGCAGCCGGCCGACGCCGAGGACCCATTTGCGGCCAACTACGGTGATGTCCCCGTCG
AGGAGATCCAGTCAAAAGCCATTTCCGGCCGCTTGTGGTCCCAGATCGGCGACCTCGACG
ACTCCTCTGCGGGGCGCTCTGTGCTTATCCGTGGATCCCTGCAGGCTATCCGCCCGGTCA
GCAAGAAGATGGCTTTCGTCGTGCTGCGCCAGAGCATGAGCACCGTGCAGTGCGTGCTCG
TTGCCAGCGCCGACGCCGGCGTCAGCACGCAAATGGTGCGCTTCGCCACCGCCTTAAGCA
AGGAGTCCATCGTCGACGTTGAGGGCGTCGTGTCCCTCCCCAAGGAGCCCCTCAAGGCCA
CCACGCAGCAAGTTGAGATTCAAGTCAGGAAGATCTATTGCATCAATAGGGCTATCCCAA
CCCTTCCAATTAACCTTGAAGATGCAGCTCGGAGTGAGGCAGATTTTGAGAAGGCTGAAC
TGGCTGGAGAAAAGCTTGTTCGTGTTGGTCAAGATACCCGCTTGAACTACAGAGCTATTG
ATCTACGAACACCCTCGAATCAAGCCATATTCCGGATCCAGTGTCAAGTTGAAAACAAAT
TCAGAGAATTTCTGTTGTCAAAGGACTTTGTTGGGATCCACACGCCAAAATTGATTTCTG
GATCCAGTGAAGGTGGTGCAGCTGTATTCAAGCTTCTGTACAATGGTCAACCTGCTTGCT
TGGCACAATCTCCTCAGTTGCACAAGCAGATGGCTCTATGTGGTGGTTTTGAACGAGTAT
TTGAGGTTGGCCCTGTGTTTAGAGCAGAAAATTCAAACACACACAGGCATCTCTGTGAGT
TTGTTGGTCTTGATGCTGAAATGGAGATTAAGGAGCATTATTTTGAGGTCTGTGACATTA
TAGATGGCTTATTTGTATCAATATTTAAACACTTGACTGAAAACTGCAATAAAGAACTCG
AGACGATAAACAGGCAGTATCCATTTGAACCTCTGCAGTATCTAGACAAAACATTGAAGC
TCACTTATGAAGAAGGAGTTCAAATGTTGAAGGAAGCCGGAACAGAAATTGAGCCTATGG
GTGACCTCAATACTGAAGCTGAGAAAAAACTTGGTCGGCTTGTCAGGGAAAAGTATGACA
CAGATTTTTTCATTATGTATCGATATCCTTTGGCTGTGCGTCCCTTCTACACTATGCCTT
GTTATGACAACCCAGCTTACAGCAATTCTTTTGATGTCTTTATTCGAGGCGAGGAGATAA
TATCTGGAGCGCAAAGGATACACACTCCTGAGCTGTTGACCAAGCGTGCAACAGAGTGTG
GAATCGATGTCAGCACTATCTCGACCTACATTGAAGTCTTCAGCTATGGCGCGCCTCCGC
ATGGTGGTTTCGGGGTGGGTTTGGAGAGGGTGGTGATGCTGTTCTGCGCCCTAAACAACA
TCAGGAAGACCTCGATGTTCCCTCGCGACCCGCAGAGGCTTGTGCCGTAATTTACTGAGT
CCAATGCCCTGAGTTTGCAGCAGAGCGTACTGGTTGTTTTGATGTTCTTTGAGCATCGAA
CATCGCTAACTTGCAATCTCAGCTACTGAAGCCCCGGTTACCGTGGTTCAGAGTTCCTGT
TAAATTCACAAAGCTACTTGTATCTATTAGATTGCTGAAACCAGCAAGTACGATCCTTTT
TGGGATTTGATCTGGTCTAATTGTTGTTAAGTGGAGGTATTGCTCTCAGTTTTTTTGTGC
TCTGTTTGTCGGCATATGCCAAGAGCTAGGGCTTCTTAAGTTCTAAGTTTTTAGACGAGT
GGATTCCTTTTTTTT