Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008963_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:8:27592563:27603716:1 gene:Zm00001d008963 gene_biotype:protein_coding transcript_biotype:protein_coding description:GDT1-like protein 1 chloroplastic
Sequence

ATGGCATCCGCCGCCGGCGCCGCCTTGTGCCCATGCTCTTTCTCCACCGTACTCTCCTCC
TCCCCCTCAACTCCCTTCCGTCCCGCAAGGACGACGCCTCGCCCTTCTCTCCGCCCGCTG
CCGCGCCGCGCCAGGCTACCGCTGCGGCCGGGCCACTCGGTACTGAGGTGCCTCCCGAAA
TGCGACTCGGGGAAGCCGGACGGAGGAGGAGATGCTGGGTTATCGGGTCGGAAGGCGGCC
CGGCCAGCGGGTCAGGGAGGACCCAGGCGGCCCGCACAGTTCGGCGCGTCGTCGTGCGGA
CTCGCATTCACGACGGTGGCGGGGGTGATAATGCTCCAGGCATCGCAGCAGGCGCTTGCC
GCCACGCAGTTCGCTGGCCTGCAGCCTGCGGACGTGCTGGGGGATCTCGGGGACGTCAGT
ACAGGTTTTGCTTCAGCTTTCCTGTTGATCTTCTTTTCTGAGCTAGGGGACAGAACGTTC
TTCATTGCGGCACTGTTAGCAGCTAGAAGTTCTGGAGCTGTCATTTTTCTAGGCACATTT
GGAGCTCTTGCGGTAATGACCATTATATCTGTAGTTCTTGGTCGAGCATTCCACTATGTT
GATGGCATCATTCCGTTCAGCTTTGGTGGTACTGATTTCCCAGTTGATGACATTGCTGCG
GCATGTCTCTTGGTTTATTATGGGGTTACTACATTACTTGATGCAGCCTCAGGTGATGAT
GAAAAGATCAATGAGGAGCAAGAGGAGGCTGAGTTAGCAGTATCGAAATTTTCTGGAAAT
GGTGCGGGGGTCATGTCTGCTGCTGGTACTATTGCTAGCACATTCGTATTGGTTTTTGTT
GCTGAATGGGGTGATAAATCATTTTTCTCCACAATTGCACTAGCAGCAGCTTCATCCCCT
CTGGGTGTCATTGCGGGATCACTAGCTGGTCATGCCATTGCAACATTGATTGCAGTTCTT
GGTGGCTCTTTGCTGGGAACATTCCTGTCTGAAAAGATTATAGCATACATTGGAGGGAGC
CTATTCTTGGCCTTTGCTGCGATTACCATAGTTGAGATAGTGACTTGA

Peptide Sequence

PEP ID

Zm00001d008963_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:8:27592563:27603716:1 gene:Zm00001d008963 transcript:Zm00001d008963_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:GDT1-like protein 1 chloroplastic
Sequence

MASAAGAALCPCSFSTVLSSSPSTPFRPARTTPRPSLRPLPRRARLPLRPGHSVLRCLPK
CDSGKPDGGGDAGLSGRKAARPAGQGGPRRPAQFGASSCGLAFTTVAGVIMLQASQQALA
ATQFAGLQPADVLGDLGDVSTGFASAFLLIFFSELGDRTFFIAALLAARSSGAVIFLGTF
GALAVMTIISVVLGRAFHYVDGIIPFSFGGTDFPVDDIAAACLLVYYGVTTLLDAASGDD
EKINEEQEEAELAVSKFSGNGAGVMSAAGTIASTFVLVFVAEWGDKSFFSTIALAAASSP
LGVIAGSLAGHAIATLIAVLGGSLLGTFLSEKIIAYIGGSLFLAFAAITIVEIVT

Transcript Sequence

Transcript ID

Zm00001d008963_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:27592563:27603716:1 gene:Zm00001d008963 gene_biotype:protein_coding transcript_biotype:protein_coding description:GDT1-like protein 1 chloroplastic
Sequence

GCTCCTCCCTCTATCCACTTGCAACGGTCGAGAGGAAGCGGAGGTCCATATCGCTCATTC
CCGCCCGTCCCGCAACCACCACCGCGGCCGCGGTGCCATGGCATCCGCCGCCGGCGCCGC
CTTGTGCCCATGCTCTTTCTCCACCGTACTCTCCTCCTCCCCCTCAACTCCCTTCCGTCC
CGCAAGGACGACGCCTCGCCCTTCTCTCCGCCCGCTGCCGCGCCGCGCCAGGCTACCGCT
GCGGCCGGGCCACTCGGTACTGAGGTGCCTCCCGAAATGCGACTCGGGGAAGCCGGACGG
AGGAGGAGATGCTGGGTTATCGGGTCGGAAGGCGGCCCGGCCAGCGGGTCAGGGAGGACC
CAGGCGGCCCGCACAGTTCGGCGCGTCGTCGTGCGGACTCGCATTCACGACGGTGGCGGG
GGTGATAATGCTCCAGGCATCGCAGCAGGCGCTTGCCGCCACGCAGTTCGCTGGCCTGCA
GCCTGCGGACGTGCTGGGGGATCTCGGGGACGTCAGTACAGGTTTTGCTTCAGCTTTCCT
GTTGATCTTCTTTTCTGAGCTAGGGGACAGAACGTTCTTCATTGCGGCACTGTTAGCAGC
TAGAAGTTCTGGAGCTGTCATTTTTCTAGGCACATTTGGAGCTCTTGCGGTAATGACCAT
TATATCTGTAGTTCTTGGTCGAGCATTCCACTATGTTGATGGCATCATTCCGTTCAGCTT
TGGTGGTACTGATTTCCCAGTTGATGACATTGCTGCGGCATGTCTCTTGGTTTATTATGG
GGTTACTACATTACTTGATGCAGCCTCAGGTGATGATGAAAAGATCAATGAGGAGCAAGA
GGAGGCTGAGTTAGCAGTATCGAAATTTTCTGGAAATGGTGCGGGGGTCATGTCTGCTGC
TGGTACTATTGCTAGCACATTCGTATTGGTTTTTGTTGCTGAATGGGGTGATAAATCATT
TTTCTCCACAATTGCACTAGCAGCAGCTTCATCCCCTCTGGGTGTCATTGCGGGATCACT
AGCTGGTCATGCCATTGCAACATTGATTGCAGTTCTTGGTGGCTCTTTGCTGGGAACATT
CCTGTCTGAAAAGATTATAGCATACATTGGAGGGAGCCTATTCTTGGCCTTTGCTGCGAT
TACCATAGTTGAGATAGTGACTTGAAAAGGGAGTTCCAGCTTCCACAATTCATAAAAAGT
ACTGATCTTTTGTCAGGGCAATGAAAAATCAGCTTGATCGTAATGGTAGTACATTGATGT
GTTACCGAACATGATTGTCCACAGGAACTTCATTGTTCGTATGGGACGTCCTAGGCTTGC
GTAGAGTGTTTTGTTTCTGGTGATGAGAATTTCTGCTTCTTTATCCAAGAACAATGTTTT
TGTCATCATCATGATTTGTAGTGGAAACACTGATAGTCAGGTTGGTCGGAAGATGGGACT
GGGAGCAAAACTATGAATTCCATGTAGCTTTTGAACTTCCTCTTACATTATTTACAAGTA
TATGAATCAGCCTTTTCGTA