Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008874_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:8:23544090:23549699:1 gene:Zm00001d008874 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCAAGGGAAATTCTCATTTTGCGTCGCCTTGATCATCCAAATGTTATCAAGCTAGAG
GGGCTAGTAACATCAAGGATGTCCTGCAGCTTATATCTGGTTTTTGAGTACATGGAACAT
GATCTAGCTGGACTAGCATCTTTCCGTGGAGTAAAGTTTACCGAGTCTCAGGTAAAGTGT
TACATGCAACAGCTCCTCCGTGGTCTTGAGCATTGCCACAGTCGTCACATTCTGCACCGT
GACATTAAGGGTTCAAATCTCTTGATTGATAACCGAGGCATATTGAAGATAGCAGATTTT
GGATTGGCAAGCTTCTTTGATCCTGAACAACGACAGCCTTTGACTAGCCGTGTTGTCACA
CTATGGTACAGGCCACCAGAGCTCTTGCTCGGTGCCACCAATTATGGTGTTGCCGTAGAC
CTCTGGAGTGCTGGCTGCATTCTTGCCGAGCTATATGCTGGCAAGCCTATCATGCCCGGC
AGAACAGAGGTTGAGCAGTTGCATAAAATATTTAAACTTTGTGGTTCACCGTCAGAGGAT
TATTGGAGGAAATCTAAGCTTCCCCATGCCACCATTTTCAAACCGCAACACCCGTATGCA
AGGCGTGTAGCAGAAACATTCAAAGAGTTCCCTGCTCCTACTCTGGCATTAGTAGATGTT
CTTCTTTCAGTAGACCCAGCAGACCGTGGAACCGCATCTTATGCATTGCAAAGTGAGTTT
TTTACAACAAAACCATATGCTTGCAATCCTTCAAGCTTGCCTAGGTACCCTCCAAGCAAA
GAGTTTGATGCAAAACGTCGGGAGGAGGAAGCTCGAAGGCAAGGTGTTACTGGAGGAAAG
CAGCATAAACATGATCCTGAAAGGAGAACTAGAGAATCAAGAGCAGTCCCTGCCCCTGAT
GCAAATGCAGAATTAGTGTCATCATTGCAGAAAAGGCGAGCCCAAGCTAATACCAGGAGC
AGGAGTGAGATGTTCAATCCCTGCAAAGAAGACTCCGCGTCCGGATTCCGAATTGAACCA
CCCCGTCCGACTCCTGGTACCGAGTCTTCCGAAGACCCGCAACATGCCTACCCGACCAGG
ATCTTTCATTCTGGGCCTTTAGTTAATCAGAGTCAGCCATCAAAGGCTGGAGGTGGCAAA
AATGATGAACTTCAGGTCCCTGGTGTTGCGAACCACCCTGTGGTTGTGTCATCTAGAACA
GGTCCCCGAGCAGATGATAGTAGTTGGACAATGGTTGCTCAAGCTGGAGCATTTTCTCAT
GGGCGGAGGCTGTCGGAATCCATCAATGAGCATCTCAGTAACAGTGGGAAGTACGATCAA
GTGTTCCCGAAGAAGGATGACAGGAACACTATTAGGGCTGATGGAGCTATTGGCTACGGA
TCCAAGGGCAACAAGATCCACCATTCTGGGCCCCTGACCTGCCCTTCGGGCAGCGTCGTC
GACGAGATGCTAAAAGAGAACGACCGGCAAATCCAAGAAGTCTTCCGGCGAACCCGGGTG
GAGAAGTCGAGAGCGAGGAGGGACCATGGACATCACCAGGGCGGCATGAGGCCCGCCGAT
TTTGGCGCCATCCCGGTCTTCCCTTCCAGCCGCTCCAGTTATCAGGCCGTGCAACAGTGA

Peptide Sequence

PEP ID

Zm00001d008874_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:8:23544090:23549699:1 gene:Zm00001d008874 transcript:Zm00001d008874_T007 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASFRGVKFTESQVKC
YMQQLLRGLEHCHSRHILHRDIKGSNLLIDNRGILKIADFGLASFFDPEQRQPLTSRVVT
LWYRPPELLLGATNYGVAVDLWSAGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSED
YWRKSKLPHATIFKPQHPYARRVAETFKEFPAPTLALVDVLLSVDPADRGTASYALQSEF
FTTKPYACNPSSLPRYPPSKEFDAKRREEEARRQGVTGGKQHKHDPERRTRESRAVPAPD
ANAELVSSLQKRRAQANTRSRSEMFNPCKEDSASGFRIEPPRPTPGTESSEDPQHAYPTR
IFHSGPLVNQSQPSKAGGGKNDELQVPGVANHPVVVSSRTGPRADDSSWTMVAQAGAFSH
GRRLSESINEHLSNSGKYDQVFPKKDDRNTIRADGAIGYGSKGNKIHHSGPLTCPSGSVV
DEMLKENDRQIQEVFRRTRVEKSRARRDHGHHQGGMRPADFGAIPVFPSSRSSYQAVQQ

Transcript Sequence

Transcript ID

Zm00001d008874_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:23544090:23549699:1 gene:Zm00001d008874 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

CTCGTCGCCGTCGCTCCGGAGGCCGTGCGCGGATGGGTGCCACGCCGCGCCGAGTCTTTC
GAGAAGCTCGACAAGATTGGTCAGGGTACATATAGTAATGTTTACAGAGCCCGTGATCTT
GAAAAGGAGAAGATTGTTGCTTTGAAGAAAGTGCGGTTTGATAATTTGGAACCAGAGAGC
GTGAAATTTATGGCAAGGGAAATTCTCATTTTGCGTCGCCTTGATCATCCAAATGTTATC
AAGCTAGAGGGGCTAGTAACATCAAGGATGTCCTGCAGCTTATATCTGGTTTTTGAGTAC
ATGGAACATGATCTAGCTGGACTAGCATCTTTCCGTGGAGTAAAGTTTACCGAGTCTCAG
GTAAAGTGTTACATGCAACAGCTCCTCCGTGGTCTTGAGCATTGCCACAGTCGTCACATT
CTGCACCGTGACATTAAGGGTTCAAATCTCTTGATTGATAACCGAGGCATATTGAAGATA
GCAGATTTTGGATTGGCAAGCTTCTTTGATCCTGAACAACGACAGCCTTTGACTAGCCGT
GTTGTCACACTATGGTACAGGCCACCAGAGCTCTTGCTCGGTGCCACCAATTATGGTGTT
GCCGTAGACCTCTGGAGTGCTGGCTGCATTCTTGCCGAGCTATATGCTGGCAAGCCTATC
ATGCCCGGCAGAACAGAGGTTGAGCAGTTGCATAAAATATTTAAACTTTGTGGTTCACCG
TCAGAGGATTATTGGAGGAAATCTAAGCTTCCCCATGCCACCATTTTCAAACCGCAACAC
CCGTATGCAAGGCGTGTAGCAGAAACATTCAAAGAGTTCCCTGCTCCTACTCTGGCATTA
GTAGATGTTCTTCTTTCAGTAGACCCAGCAGACCGTGGAACCGCATCTTATGCATTGCAA
AGTGAGTTTTTTACAACAAAACCATATGCTTGCAATCCTTCAAGCTTGCCTAGGTACCCT
CCAAGCAAAGAGTTTGATGCAAAACGTCGGGAGGAGGAAGCTCGAAGGCAAGGTGTTACT
GGAGGAAAGCAGCATAAACATGATCCTGAAAGGAGAACTAGAGAATCAAGAGCAGTCCCT
GCCCCTGATGCAAATGCAGAATTAGTGTCATCATTGCAGAAAAGGCGAGCCCAAGCTAAT
ACCAGGAGCAGGAGTGAGATGTTCAATCCCTGCAAAGAAGACTCCGCGTCCGGATTCCGA
ATTGAACCACCCCGTCCGACTCCTGGTACCGAGTCTTCCGAAGACCCGCAACATGCCTAC
CCGACCAGGATCTTTCATTCTGGGCCTTTAGTTAATCAGAGTCAGCCATCAAAGGCTGGA
GGTGGCAAAAATGATGAACTTCAGGTCCCTGGTGTTGCGAACCACCCTGTGGTTGTGTCA
TCTAGAACAGGTCCCCGAGCAGATGATAGTAGTTGGACAATGGTTGCTCAAGCTGGAGCA
TTTTCTCATGGGCGGAGGCTGTCGGAATCCATCAATGAGCATCTCAGTAACAGTGGGAAG
TACGATCAAGTGTTCCCGAAGAAGGATGACAGGAACACTATTAGGGCTGATGGAGCTATT
GGCTACGGATCCAAGGGCAACAAGATCCACCATTCTGGGCCCCTGACCTGCCCTTCGGGC
AGCGTCGTCGACGAGATGCTAAAAGAGAACGACCGGCAAATCCAAGAAGTCTTCCGGCGA
ACCCGGGTGGAGAAGTCGAGAGCGAGGAGGGACCATGGACATCACCAGGGCGGCATGAGG
CCCGCCGATTTTGGCGCCATCCCGGTCTTCCCTTCCAGCCGCTCCAGTTATCAGGCCGTG
CAACAGTGAGGCGCTCTCCAACAAGATCGGTTGGAGTTGGAACCTTTTGTTCGGTCCTGT
GCTGGTTTCGGGTGGTGGGACGCTATGCTATGCTATGCCATGCTATGTACAGGGTGGGAG
AAGCAGAGGGTGTGAAGGTGAGGGGGAGGTGATTTGTTTATTGGCGGAGTGTCTCGGTGA
CCAGAGTGAGTCATGTATCATCAGGTGGGCTTTGGTTGAAGTGTTTGCTCGCCGAGCCTG
AAACTGAAACCCTTCTTCACTGTGATTTCACCAAATCTCAGACCTGGGAGCTTTGTT